Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b09
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01560.1 68418.m00071 lectin protein kinase, putative similar...    34   0.11 
At5g01550.1 68418.m00070 lectin protein kinase, putative similar...    33   0.14 
At1g60420.1 68414.m06802 DC1 domain-containing protein contains ...    30   1.4  
At5g46390.1 68418.m05709 peptidase S41 family protein similar to...    28   7.2  
At4g30780.1 68417.m04361 expressed protein hypothetical protein ...    27   9.5  
At3g08660.1 68416.m01006 phototropic-responsive protein, putativ...    27   9.5  

>At5g01560.1 68418.m00071 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 691

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 105 KKKTPTLLESISKKISTTETFQRLRNKNLTTLNK-IKYDSELLLHYLY 245
           KK TP  ++ + + ++  E+  RLR+KNL  L    K+ ++LLL Y Y
Sbjct: 392 KKITPNSMQGVREFVAEIESLGRLRHKNLVNLQGWCKHRNDLLLIYDY 439


>At5g01550.1 68418.m00070 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 688

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 105 KKKTPTLLESISKKISTTETFQRLRNKNLTTLNK-IKYDSELLLHYLY 245
           KK TP  ++ + + I+  E+  RLR+KNL  L    K  ++LLL Y Y
Sbjct: 391 KKITPNSMQGVREFIAEIESLGRLRHKNLVNLQGWCKQKNDLLLIYDY 438


>At1g60420.1 68414.m06802 DC1 domain-containing protein contains
           Pfam domain PF03107: DC1 domain
          Length = 578

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/62 (33%), Positives = 34/62 (54%)
 Frame = +3

Query: 90  PLSMSKKKTPTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNS 269
           P+S  + KT  LL S++     TE   +L  +  T L + K D E++L  L DD+++ N 
Sbjct: 197 PVSELEGKTIGLLFSVASYRKCTELTPKLV-EFYTKLKENKEDFEIVLISLEDDEESFNQ 255

Query: 270 DY 275
           D+
Sbjct: 256 DF 257


>At5g46390.1 68418.m05709 peptidase S41 family protein similar to
           C-terminal peptidase of the D1 protein [Hordeum vulgare
           subsp vulgare] GI:1296805; contains Pfam profiles
           PF03572: Peptidase family S41B, PF00595: PDZ domain
           (Also known as DHR or GLGF)
          Length = 428

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 357 AQVHVSNGYSFEFHPGSQPRTFQTIHTDG--LIIKVLILCDECCK 485
           A++ +  G +  +  G  P   +T+ +D   LI   LI+CDE CK
Sbjct: 357 AKLFLDEGDTVIYTAGRDPEAQKTVVSDKKPLITAPLIVCDESCK 401


>At4g30780.1 68417.m04361 expressed protein hypothetical protein
           F27D4.1 -  Arabidopsis thaliana,PID:g4115371
          Length = 589

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 90  PLSMSKKKTPTLLESISKKIS 152
           PL +S KK+P+LLE I  KI+
Sbjct: 71  PLGLSLKKSPSLLELIQMKIT 91


>At3g08660.1 68416.m01006 phototropic-responsive protein, putative
           contains similarity to root phototropism RPT2
           [Arabidopsis thaliana] gi|6959488|gb|AAF33112, a signal
           transducer of phototropic response PMID:10662859
          Length = 582

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 465 LCDECCKKELRDYIKGENSFNVAFKNCESILCRRISFQTVLMTCA 599
           L D     ELRD+  G ++F +  K C  I     +F  V + CA
Sbjct: 68  LKDSSSMIELRDFPGGPSTFELTMKFCYGINFDITAFNVVSLRCA 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,300,774
Number of Sequences: 28952
Number of extensions: 181593
Number of successful extensions: 450
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)