Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10b05
(751 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 32 0.47
At5g03990.1 68418.m00379 expressed protein predicted protein, Ar... 30 1.4
At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative... 29 2.5
At5g53190.1 68418.m06612 nodulin MtN3 family protein similar to ... 29 4.4
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 29 4.4
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 29 4.4
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 29 4.4
At1g49560.1 68414.m05557 myb family transcription factor contain... 29 4.4
At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR ... 29 4.4
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 4.4
At2g22610.1 68415.m02680 kinesin motor protein-related 28 5.8
At2g45140.1 68415.m05618 vesicle-associated membrane protein, pu... 28 7.6
At1g32730.1 68414.m04036 expressed protein 28 7.6
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 31.9 bits (69), Expect = 0.47
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Frame = +1
Query: 343 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGL---LKILMRLNFDNKSNALLHLQT 513
W+ LN + ++ + D G +FA GL L +L + FD NA T
Sbjct: 236 WEEKDGEFLNTLTNYRSDKRPD-PLRGGVFADDMGLGKTLTLLSLIAFDRYGNASTSTPT 294
Query: 514 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKND 627
E D DKIE K KK VT + K D
Sbjct: 295 EEPLDGEGDKIE---KKGKKRGRGKSSESVTRKKLKTD 329
>At5g03990.1 68418.m00379 expressed protein predicted protein,
Arabidopsis thaliana
Length = 302
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Frame = +1
Query: 157 DYKKYHINVQQWSH-----IVKWDSFKCNTHSFKYRYVHN 261
D+ + N W H WD CN +SF Y+ V N
Sbjct: 207 DHNNNNTNTDSWDHNNNFKAETWDQKNCNNNSFNYKKVEN 246
>At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative
strong similarity to gi:4467359
Length = 1116
Score = 29.5 bits (63), Expect = 2.5
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Frame = +1
Query: 379 IFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGE--RDDLRDKIES 552
+FH+ K++ D S K G LK L + FD K N +T+ D+ +
Sbjct: 360 LFHESKNEDDKVSNAVDDEEKDGFLKKLFKEKFDEKRNGNERNETDETVYTDETSGEDNG 419
Query: 553 VLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTE 732
KKL EKF K D GN E E L +L + E +KT + +E
Sbjct: 420 REGFFKKL--FKEKFEDKPNIGKADDGNESEDDESSEFSLFRRL-FRRHPEDVKTTLPSE 476
Query: 733 S 735
+
Sbjct: 477 N 477
>At5g53190.1 68418.m06612 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 263
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +1
Query: 427 LFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSE 591
+ AT G+L++++ + NK + +R+D DK ++ L+ V ++ NS+
Sbjct: 197 MVATPLGILQLILYFKYKNKKDLAPTTMVITKRNDHDDKNKATLEFVVDVDRNSD 251
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/80 (27%), Positives = 38/80 (47%)
Frame = +1
Query: 475 FDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFE 654
F K N L + G + L +K E + ++K+ K V + FK + QF+
Sbjct: 244 FPTKENMELLMSYTGGKWTL-EKWEQYFQELRKVLRVESKLRVFY--FKIQFSTKITQFK 300
Query: 655 LRLNELDAKLNMLQSAEKLK 714
RLN +++ + S++KLK
Sbjct: 301 KRLNVVNSACEEVCSSQKLK 320
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 592 FRCLYSVFLHVLKQIQFCRANHHARLQFEGAATRCF 485
FR Y + +H +QI + R+N L+F+G+ + C+
Sbjct: 141 FRAPYQL-IHNHQQIAYSRSNSGVNLKFDGSGSSCY 175
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/70 (22%), Positives = 29/70 (41%)
Frame = +1
Query: 529 DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEK 708
DL ++ E + KH ++ + +HE F R E+ R + + + +K
Sbjct: 426 DLTERDEHIKKHEVEIGELESRISKSHELFNTKKRERDEEQRKRKEKWGEESQLSSEIDK 485
Query: 709 LKTAIVTESK 738
LKT + K
Sbjct: 486 LKTELERAKK 495
>At1g49560.1 68414.m05557 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 333
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 502 HLQTEG-ERDDLRDKIESVLKHVKKLNTNSEK 594
H+Q EG D+++ ++ H++K N+N+EK
Sbjct: 226 HMQEEGLTNDEVKSHLQKYRLHIRKPNSNAEK 257
>At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 787
Score = 28.7 bits (61), Expect = 4.4
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 HNDTNAKFYNVIDFCKGLEIAHDDILDCN-WDSDQVYHLNEIIFHKQKSKRDLNSLGALF 432
H FY +++ + L + +L CN W+ VYH N++ +++ R LNS LF
Sbjct: 62 HQTQLGVFYEILEKARKL---CEKVLRCNRWNLKHVYHANKMKDLEKQISRFLNSQILLF 118
Query: 433 ATKQGLLKILMRLNFDNKSNALLHLQTE 516
+ +R+N D + L TE
Sbjct: 119 VLAE---VCHLRVNGDRIERNMDRLLTE 143
>At1g02730.1 68414.m00226 cellulose synthase family protein similar to
cellulose synthase catalytic subunit [gi:13925881] from
Nicotiana alata, cellulose synthase-4 [gi:9622880] from
Zea mays
Length = 1181
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = -2
Query: 438 GREQCAQRVEIAFGFLLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVV 259
G ++ A + + FL+V + MVN+IA+ + + + F ++K+ V F V+
Sbjct: 1068 GDDEFADLYVVKWSFLMVPPLTIMMVNMIAIAVGLARTLYSPFPQWSKLVGGVFFSFWVL 1127
Query: 258 VHV 250
H+
Sbjct: 1128 CHL 1130
>At2g22610.1 68415.m02680 kinesin motor protein-related
Length = 1093
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/63 (23%), Positives = 35/63 (55%)
Frame = +1
Query: 529 DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEK 708
+L +++ KH++++ T E V + T N+V F++ +++ N+L+++ +
Sbjct: 939 ELEMRLKEQEKHIQEMATTREFPEVANAT-PNEVKTCFKEDNFGNENMESNTNILRTSNR 997
Query: 709 LKT 717
LKT
Sbjct: 998 LKT 1000
>At2g45140.1 68415.m05618 vesicle-associated membrane protein,
putative / VAMP, putative similar to VAP27 GI:6688926
[Nicotiana plumbaginifolia]
Length = 239
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 481 NKSNALLHLQTEGERD-DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFEL 657
+ S L+ +Q + E DL+ K + +L+ V + K VTHE F + G+R E+ +L
Sbjct: 62 SSSEVLVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKD-VTHEMFSKEAGHRVEETKL 120
Query: 658 RL 663
R+
Sbjct: 121 RV 122
>At1g32730.1 68414.m04036 expressed protein
Length = 327
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +1
Query: 508 QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNR-FEQFELRLNELDAKL 684
+TE + + + +++ L +K+L+ S + K V + +E+ LNE+ KL
Sbjct: 205 RTESFKKRIAETVKAGLVKLKRLDLGSSSD--DQDDIKRRVKRKKWEEKGSALNEIIDKL 262
Query: 685 NMLQSAEKLKTAIVTESKM 741
N ++ E LK+ + +SK+
Sbjct: 263 NKARTEEDLKSCLEMKSKL 281
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,844,222
Number of Sequences: 28952
Number of extensions: 259076
Number of successful extensions: 805
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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