Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a22
         (397 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15440.2 68414.m01856 transducin family protein / WD-40 repea...    54   3e-08
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea...    54   3e-08
At5g27220.1 68418.m03247 protein transport protein-related low s...    29   1.1  
At1g68185.1 68414.m07789 ubiquitin-related similar to ubiquitin-...    28   2.0  
At5g54590.1 68418.m06796 protein kinase family protein contains ...    28   2.6  
At1g66340.1 68414.m07534 ethylene receptor 1 (ETR1) identical to...    27   3.4  
At3g11720.1 68416.m01437 expressed protein                             27   6.0  
At2g17970.1 68415.m02084 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   6.0  
At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein ...    26   7.9  
At2g26370.1 68415.m03165 MD-2-related lipid recognition domain-c...    26   7.9  

>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
            family protein Strong similarity to gb X95263 Periodic
            tryptophan protein 2 gene (PWP2) from Homo sapiens and
            contains 6 WD40, G-beta repeat domains
          Length = 860

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
 Frame = +3

Query: 3    ALIQECLESVPTKDISLTVSSLDEDYGDRLLSTIARLLEDSRHVEQLLHWTTALVST--- 173
            +LI++C+ +V   DI     S+ + Y +RL+  +  LLE+  H+E +LHW   +      
Sbjct: 753  SLIKKCIFAVAPADIKAVAISVRQKYLERLMEALVDLLENCPHLEFILHWCQEICKAHGS 812

Query: 174  ---GRHKFPPSALLAVEKVLTVKYSQLSKICDFNKYTIRCIKTV 296
                 ++    AL +++K +T  +  L+ +C  N+YT+R + +V
Sbjct: 813  SIQRNYRTLLPALRSLQKAITRAHQDLADMCSSNEYTLRYLCSV 856


>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
            family protein Strong similarity to gb X95263 Periodic
            tryptophan protein 2 gene (PWP2) from Homo sapiens and
            contains 6 WD40, G-beta repeat domains
          Length = 900

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
 Frame = +3

Query: 3    ALIQECLESVPTKDISLTVSSLDEDYGDRLLSTIARLLEDSRHVEQLLHWTTALVST--- 173
            +LI++C+ +V   DI     S+ + Y +RL+  +  LLE+  H+E +LHW   +      
Sbjct: 793  SLIKKCIFAVAPADIKAVAISVRQKYLERLMEALVDLLENCPHLEFILHWCQEICKAHGS 852

Query: 174  ---GRHKFPPSALLAVEKVLTVKYSQLSKICDFNKYTIRCIKTV 296
                 ++    AL +++K +T  +  L+ +C  N+YT+R + +V
Sbjct: 853  SIQRNYRTLLPALRSLQKAITRAHQDLADMCSSNEYTLRYLCSV 896


>At5g27220.1 68418.m03247 protein transport protein-related low
           similarity to SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 1181

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
 Frame = +3

Query: 216 KVLTVKYSQLSKICD--FNKYTIRCIKTVGDVVLKREEVEPMDTD 344
           K LT+   ++++ C+  F + ++  IKT G+V LK +++E MD D
Sbjct: 270 KDLTLVMDKIAE-CEKLFERRSLELIKTQGEVELKGKQLEQMDID 313


>At1g68185.1 68414.m07789 ubiquitin-related similar to
           ubiquitin-like protein smt3/pmt3 SP:O13351 from [Fission
           yeast]
          Length = 215

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
 Frame = +3

Query: 66  LDEDYGDRLLSTIARLLEDSRHVEQLLHWTTALVSTGRHKF--PPSALLAVEKVLTVKYS 239
           +D+D  D  ++ I +  + S+ VE+L      +  TG   +  PP  ++  +   +V+ S
Sbjct: 25  IDDDDDDASVTPIPKKAKTSQTVEKLDDDVKVIEVTGDDDWLLPPPKVIFDKSKDSVEDS 84

Query: 240 QLSKICDFNKYTIRCIKTVGDVVLKREEVEPMDTDGPTSSDSE 368
            +  +       +   KTVGDV+ + EE    + +   +  SE
Sbjct: 85  TIKALRSKKMELMSFTKTVGDVMQEVEESAKREVEESRNPSSE 127


>At5g54590.1 68418.m06796 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 261

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 295 TVFMHLIVYLLKSHILLNCEYL 230
           T+ MHL+    K+H+L+NC  L
Sbjct: 237 TILMHLLNNNFKTHVLINCSRL 258


>At1g66340.1 68414.m07534 ethylene receptor 1 (ETR1) identical to
           GB:P49333 from [Arabidopsis thaliana] (Science 262
           (5133), 539-544 (1993))
          Length = 738

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -3

Query: 200 RARRELVSPRRHERRGPVQQLLHVPAVLEEARYRAQQPVAV 78
           RAR + ++   HE R P+  ++ + ++L+E     +Q + V
Sbjct: 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMV 382


>At3g11720.1 68416.m01437 expressed protein
          Length = 542

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 15  ECLESVPTKDISLTVSSLDEDYGD 86
           E L SV TKD  L+ SS +  YGD
Sbjct: 58  EKLRSVSTKDQDLSKSSTEASYGD 81


>At2g17970.1 68415.m02084 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to At2g17960, At4g36090; contains
           PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 507

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 12  QECLESVPTKDISLTVSSLDE 74
           + C+ +VPTK IS+T   +DE
Sbjct: 395 KHCVPAVPTKRISITFRKMDE 415


>At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 597

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 51  LTVSSLDEDYGDRLLSTIARLLEDSRHVEQLLHWTTALV-STGRHKFPPSALLAVEKVLT 227
           L  S+L+E +G    +++ +L   SRH  Q+ H+ ++ V     H F  SA +A   V+ 
Sbjct: 416 LKPSNLEETFGSYDSASVMQLQSPSRH-SQMNHYPSSPVRQPPPHGFESSAAMAA-AVMN 473

Query: 228 VKYSQLSK 251
            + S  +K
Sbjct: 474 ARSSAFAK 481


>At2g26370.1 68415.m03165 MD-2-related lipid recognition
           domain-containing protein / ML domain-containing protein
           contains Pfam profile PF02221: ML domain
          Length = 173

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 21  LESVPTKDISLTVSSLDEDYGD 86
           L+S+P KD S  V SL ++YGD
Sbjct: 127 LQSLPHKDKSKIVISLVDEYGD 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,467,967
Number of Sequences: 28952
Number of extensions: 128022
Number of successful extensions: 470
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)