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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a14
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c...   111   3e-25
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c...   109   2e-24
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein...    98   4e-21
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein...    81   6e-16
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein...    81   8e-16
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein...    64   6e-11
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein...    62   4e-10
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein...    54   8e-08
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein...    51   8e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein...    51   8e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id...    51   8e-07
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id...    51   8e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id...    51   8e-07
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein...    50   2e-06
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c...    48   4e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /...    48   4e-06
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein...    40   0.001
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat...    39   0.003
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat...    39   0.003
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila...    38   0.004
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l...    38   0.004
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l...    38   0.004
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l...    38   0.006
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ...    37   0.010
At2g24590.1 68415.m02936 splicing factor, putative similar to to...    36   0.030
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein...    35   0.040
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ...    35   0.040
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein              35   0.053
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein...    33   0.12 
At4g19130.1 68417.m02823 replication protein-related similar to ...    33   0.16 
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein...    33   0.16 
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)...    33   0.16 
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ...    33   0.21 
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden...    32   0.28 
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ...    32   0.37 
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein...    31   0.50 
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS...    31   0.50 
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein...    31   0.50 
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic...    31   0.65 
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic...    31   0.65 
At3g31950.1 68416.m04046 hypothetical protein                          31   0.65 
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim...    31   0.65 
At5g08730.1 68418.m01037 IBR domain-containing protein contains ...    31   0.87 
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina...    31   0.87 
At5g51300.2 68418.m06360 splicing factor-related contains simila...    30   1.1  
At5g51300.1 68418.m06359 splicing factor-related contains simila...    30   1.1  
At5g47430.1 68418.m05844 expressed protein                             30   1.1  
At5g47390.1 68418.m05840 myb family transcription factor contain...    30   1.1  
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein...    30   1.1  
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ...    30   1.1  
At4g17410.1 68417.m02607 expressed protein                             30   1.1  
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein...    30   1.1  
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa...    30   1.1  
At3g16350.1 68416.m02068 myb family transcription factor ; conta...    30   1.1  
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS...    30   1.1  
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS...    30   1.1  
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu...    30   1.5  
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s...    29   2.0  
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ...    29   2.0  
At2g16690.1 68415.m01915 hypothetical protein similar to zinc fi...    29   2.0  
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains...    29   2.0  
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain...    29   2.0  
At5g61670.2 68418.m07738 expressed protein                             29   2.6  
At5g61670.1 68418.m07737 expressed protein                             29   2.6  
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi...    29   2.6  
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein...    29   2.6  
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ...    29   3.5  
At5g21140.1 68418.m02524 expressed protein                             29   3.5  
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ...    29   3.5  
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ...    29   3.5  
At4g06479.1 68417.m00885 hypothetical protein                          29   3.5  
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein...    29   3.5  
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai...    29   3.5  
At2g31850.1 68415.m03889 expressed protein                             29   3.5  
At2g07740.1 68415.m01002 zinc knuckle (CCHC-type) family protein...    29   3.5  
At4g30200.3 68417.m04295 expressed protein contains weak similar...    28   4.6  
At4g30200.2 68417.m04294 expressed protein contains weak similar...    28   4.6  
At4g30200.1 68417.m04293 expressed protein contains weak similar...    28   4.6  
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein...    28   4.6  
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein...    28   4.6  
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein...    28   6.1  
At5g27220.1 68418.m03247 protein transport protein-related low s...    28   6.1  
At4g06526.1 68417.m00938 hypothetical protein                          28   6.1  
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ...    28   6.1  
At1g40080.1 68414.m04737 hypothetical protein member of hypothet...    28   6.1  
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein...    27   8.1  
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein...    27   8.1  
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR...    27   8.1  

>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
           contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 299

 Score =  111 bits (268), Expect = 3e-25
 Identities = 57/164 (34%), Positives = 75/164 (45%), Gaps = 31/164 (18%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA---------- 318
           CY C  TGHFAR+CT  G   +        + C+ C   GH ARDC +++          
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193

Query: 319 ----DRCYRCNGTGHIARECAQ----------SPDEPSCYNCNKTGHIARNCPEGGRESA 456
               D CY C   GH AR+C Q               +CY+C   GHIAR+C    +   
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC--ATKRQP 251

Query: 457 TQTCYNCNKSGHISRNCPD-------GTKTCYVCGKPGHISREC 567
           ++ CY C  SGH++R+C             CY CGK GH +REC
Sbjct: 252 SRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295



 Score =  109 bits (261), Expect = 2e-24
 Identities = 60/171 (35%), Positives = 79/171 (46%), Gaps = 34/171 (19%)
 Frame = +1

Query: 163 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC------------ 306
           S CY C   GH +++C  GG        +R  E C+ C  TGHFARDC            
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGAT 159

Query: 307 KEEADRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGHIARNCPE---- 438
           K   D CY C   GH+AR+C Q                  CY C   GH AR+C +    
Sbjct: 160 KGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAA 219

Query: 439 GGRES---ATQTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRECDE 573
           G   S    + TCY+C   GHI+R+C      ++ CY CG  GH++R+CD+
Sbjct: 220 GNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQ 270



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 35/97 (36%), Positives = 46/97 (47%), Gaps = 30/97 (30%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQ--------------------GGV--VSRDSGFNRQREK-CFKCN 279
           CY C   GHFAR+CTQ                    GGV  ++RD    RQ  + C++C 
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259

Query: 280 RTGHFARDCKEEA-------DRCYRCNGTGHIARECA 369
            +GH ARDC +         + CY+C   GH AREC+
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296



 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 22/50 (44%), Positives = 28/50 (56%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 318
           CY+C  +GH AR+C Q G     SG       C+KC + GHFAR+C   A
Sbjct: 255 CYQCGGSGHLARDCDQRG-----SGGGGNDNACYKCGKEGHFARECSSVA 299



 Score = 35.1 bits (77), Expect = 0.040
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 157 SSSVCYKCNRTGHFARECT 213
           + + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 514 GTKTCYVCGKPGHISREC 567
           G   CY CG+ GHIS++C
Sbjct: 98  GGSGCYNCGELGHISKDC 115


>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
           contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 301

 Score =  109 bits (261), Expect = 2e-24
 Identities = 59/168 (35%), Positives = 77/168 (45%), Gaps = 35/168 (20%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK------------- 309
           CY C   GHFAR+C Q G  +   G    R  C+ C   GH A+DC+             
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190

Query: 310 --EEADRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRES 453
                D CY C G GH AR+C Q+          +CY C   GHIA+ C    P GG   
Sbjct: 191 RGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GG 249

Query: 454 ATQTCYNCNKSGHISRNCP----------DGTKTCYVCGKPGHISREC 567
             + CY C  +GH++R+C            G+  C++CGK GH +REC
Sbjct: 250 GGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297



 Score = 94.7 bits (225), Expect = 5e-20
 Identities = 55/177 (31%), Positives = 76/177 (42%), Gaps = 39/177 (22%)
 Frame = +1

Query: 157 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKCNRTGHFARDCKEEAD- 321
           S   C+ C   GH A++C  G G  S   G  R+     +C+ C   GHFARDC++    
Sbjct: 92  SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGG 151

Query: 322 ----------RCYRCNGTGHIAREC-------------AQSPDEPSCYNCNKTGHIARNC 432
                      CY C   GH+A++C              +      CY C   GH AR+C
Sbjct: 152 NSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDC 211

Query: 433 PEGGRES---ATQTCYNCNKSGHISRNCPD--------GTKTCYVCGKPGHISRECD 570
            + G  +      TCY C   GHI++ C          G + CY CG  GH++R+CD
Sbjct: 212 RQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCD 268



 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 52/156 (33%), Positives = 64/156 (41%), Gaps = 43/156 (27%)
 Frame = +1

Query: 229 SRDSGFNRQREKCFKCNRTGHFARDCKEEA----------------DRCYRCNGTGHIAR 360
           SR SG N     CF C   GH A+DC   +                  CY C   GH AR
Sbjct: 89  SRGSGGN-----CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFAR 143

Query: 361 ECAQSPDEPS---------CYNCNKTGHIARNC----------PEGGRESATQTCYNCNK 483
           +C QS    S         CY+C + GH+A++C            GGR S    CY C  
Sbjct: 144 DCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGG 203

Query: 484 SGHISRNCPD--------GTKTCYVCGKPGHISREC 567
            GH +R+C          G  TCY CG  GHI++ C
Sbjct: 204 VGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVC 239



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
 Frame = +1

Query: 163 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE--------- 315
           S CY C   GH A+ CT   + S   G  R    C++C  TGH ARDC            
Sbjct: 224 STCYTCGGVGHIAKVCTSK-IPSGGGGGGRA---CYECGGTGHLARDCDRRGSGSSGGGG 279

Query: 316 -ADRCYRCNGTGHIAREC 366
            +++C+ C   GH AREC
Sbjct: 280 GSNKCFICGKEGHFAREC 297



 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 24/50 (48%), Positives = 29/50 (58%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 318
           CY+C  TGH AR+C + G  S  SG      KCF C + GHFAR+C   A
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKEGHFARECTSVA 301



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 20/63 (31%), Positives = 34/63 (53%)
 Frame = +1

Query: 388 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 567
           +C+NC + GH+A++C +GG    +       +SG        G   CY+CG  GH +R+C
Sbjct: 95  NCFNCGEVGHMAKDC-DGGSGGKSFGGGGGRRSG--------GEGECYMCGDVGHFARDC 145

Query: 568 DEA 576
            ++
Sbjct: 146 RQS 148



 Score = 32.3 bits (70), Expect = 0.28
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 160 SSVCYKCNRTGHFARECT 213
           S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298


>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 257

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
 Frame = +1

Query: 163 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 342
           ++C  C R GHFAR+C+   V             C  C   GH A +C  E+ RC+ C  
Sbjct: 55  NLCNNCKRPGHFARDCSNVSV-------------CNNCGLPGHIAAECTAES-RCWNCRE 100

Query: 343 TGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGHISRNCPDGT 519
            GH+A  C+   +E  C++C K+GH AR+C     R    + C NC K GH++ +C +  
Sbjct: 101 PGHVASNCS---NEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTN-D 156

Query: 520 KTCYVCGKPGHISREC 567
           K C  C   GHI+R+C
Sbjct: 157 KACKNCRTSGHIARDC 172



 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 43/111 (38%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
 Frame = +1

Query: 253 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 432
           Q   C  C R GHFARDC      C  C   GHIA EC     E  C+NC + GH+A NC
Sbjct: 53  QGNLCNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNC 108

Query: 433 PEGGRESATQTCYNCNKSGHISRNCPDG------TKTCYVCGKPGHISREC 567
              G       C++C KSGH +R+C +        + C  C K GH++ +C
Sbjct: 109 SNEG------ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC 153



 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
 Frame = +1

Query: 157 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 336
           +  +C+ C ++GH AR+C+     SR +G  R    CFK    GH A DC  +   C  C
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK---QGHLAADCTND-KACKNC 162

Query: 337 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG---RESATQTCYNCNKSGHISRNC 507
             +GHIAR+C    ++P C  C+ +GH+AR+CP+G     +  ++      + G +SR  
Sbjct: 163 RTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSRMS 219

Query: 508 PD--GTKT---CYVCGKPGHISRECDEAR 579
            D  G      C+ CG  GH + EC  AR
Sbjct: 220 RDREGVSAMIICHNCGGRGHRAYECPSAR 248



 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
 Frame = +1

Query: 163 SVCYKCNRTGHFARECTQGGVV--SRDSGF---NRQREK-CFKCNRTGHFARDCKEEADR 324
           SVC  C   GH A ECT        R+ G    N   E  C  C ++GH ARDC     R
Sbjct: 74  SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133

Query: 325 ------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 486
                 C  C   GH+A +C    ++ +C NC  +GHIAR+C           C  C+ S
Sbjct: 134 AGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRN------DPVCNICSIS 184

Query: 487 GHISRNCPDG 516
           GH++R+CP G
Sbjct: 185 GHVARHCPKG 194


>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 268

 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 18/126 (14%)
 Frame = +1

Query: 259 EKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKT 411
           E CF C+   H A+ C E+++      C +C   GH  + C +  +E S    CYNC  T
Sbjct: 74  EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDT 133

Query: 412 GHIARNCPEGGRESATQ--TCYNCNKSGHISRNCPDGTK-------TCYVCGKPGHISRE 564
           GH   +CP    +  T+  +C+ C   GHIS+NCP+           C VCG   H+ ++
Sbjct: 134 GHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKD 193

Query: 565 CDEARN 582
           C +  N
Sbjct: 194 CPDKFN 199



 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
 Frame = +1

Query: 232 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC-NGTGHIARECAQSPDEPSCYNCNK 408
           +D    ++++  FK  + G          DR  R  + T H  R     P E  C+ C+ 
Sbjct: 30  KDPNKKKKKKSLFKKKKPG-------SSTDRPQRTGSSTRHPLRVPGMKPGE-GCFICHS 81

Query: 409 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGT------KTCYVCGKPGHISREC 567
             HIA+ CPE       + C  C + GH  +NCP+        K CY CG  GH    C
Sbjct: 82  KTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHC 140



 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
 Frame = +1

Query: 160 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD------ 321
           + +C +C R GH  + C +       +  + +++ C+ C  TGH    C    +      
Sbjct: 98  NKICLQCRRRGHSLKNCPE------KNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKF 151

Query: 322 -RCYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRESATQ 462
             C+ C G GHI++ C ++     P    C  C    H+ ++CP+   + + Q
Sbjct: 152 ASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFNQESAQ 204



 Score = 35.5 bits (78), Expect = 0.030
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = +1

Query: 466 CYNCNKSGHISRNCPDGT-----KTCYVCGKPGHISRECDEARN*PQPPCLPYN 612
           C+ C+   HI++ CP+ +     K C  C + GH  + C E  N      L YN
Sbjct: 76  CFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYN 129


>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 372

 Score = 80.6 bits (190), Expect = 8e-16
 Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
 Frame = +1

Query: 151 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNRTGHFARDCKEEAD 321
           A + + CYKC + GH+AR+CT    V  D+G  +       CFKC + GH++RDC  ++ 
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQS- 287

Query: 322 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP--------EGGR---ESATQTC 468
                    +   +   S     CY C K GH +R+C         + G+    S+T  C
Sbjct: 288 -----GNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDC 342

Query: 469 YNCNKSGHISRNCPDGTKTCYVCGK 543
           Y C K+GH SR+C    +T    GK
Sbjct: 343 YKCGKAGHWSRDCTSPAQTTNTPGK 367



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
 Frame = +1

Query: 385 PSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCPDGTKT-----------C 528
           P+ Y+  K  +   +   G + + T T CY C K GH +R+C   + T           C
Sbjct: 211 PTSYSVTKNSNFGDSDTRGYQNAKTGTPCYKCGKEGHWARDCTVQSDTGPVKSTSAAGDC 270

Query: 529 YVCGKPGHISREC 567
           + CGKPGH SR+C
Sbjct: 271 FKCGKPGHWSRDC 283


>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 551

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 41/142 (28%), Positives = 56/142 (39%), Gaps = 7/142 (4%)
 Frame = +1

Query: 118 VLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA 297
           +L   E+SK   +    CY C   GH    C + G              C++C + GH  
Sbjct: 247 ILCKYEYSKE-DLKDVQCYICKSFGHLC--CVEPG------NSLSWAVSCYRCGQLGHSG 297

Query: 298 RDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-------GRESA 456
             C    +     +           S +   CY C + GH AR CP         GRES 
Sbjct: 298 LACGRHYEESNENDSA--TPERLFNSREASECYRCGEEGHFARECPNSSSISTSHGRESQ 355

Query: 457 TQTCYNCNKSGHISRNCPDGTK 522
           T  CY CN SGH +R CP+ ++
Sbjct: 356 T-LCYRCNGSGHFARECPNSSQ 376



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 56/220 (25%), Positives = 77/220 (35%), Gaps = 38/220 (17%)
 Frame = +1

Query: 22  DGGWLPCYRSVINYNLFVNS*DN*SLNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFA 201
           D GW+ CY      +   N     +   +   +  + E           CY C +TGH A
Sbjct: 162 DAGWVSCYSCGEQGHTSFNC-PTPTKRRKPCFICGSLEHGAKQCSKGHDCYICKKTGHRA 220

Query: 202 RECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-------CYRCNGTGHIAR 360
           ++C         +G   +   C +C   GH    CK E  +       CY C   GH+  
Sbjct: 221 KDCPD----KYKNG--SKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHL-- 272

Query: 361 ECAQSPDEP-----SCYNCNKTGHIARNC-----PEGGRESAT----------QTCYNCN 480
            C   P        SCY C + GH    C          +SAT            CY C 
Sbjct: 273 -CCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCG 331

Query: 481 KSGHISRNCPDGTKT-----------CYVCGKPGHISREC 567
           + GH +R CP+ +             CY C   GH +REC
Sbjct: 332 EEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFAREC 371



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 26/77 (33%), Positives = 38/77 (49%)
 Frame = +1

Query: 160 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCN 339
           +S CY+C   GHFAREC     +S   G    +  C++CN +GHFAR+C   +    R  
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFARECPNSSQVSKRDR 382

Query: 340 GTGHIARECAQSPDEPS 390
            T   + +  +   E S
Sbjct: 383 ETSTTSHKSRKKNKENS 399



 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = +1

Query: 388 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 567
           SCY+C + GH + NCP   +    + C+ C    H ++ C  G   CY+C K GH +++C
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKG-HDCYICKKTGHRAKDC 223

Query: 568 -DEARN 582
            D+ +N
Sbjct: 224 PDKYKN 229



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 157 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNR 282
           S ++CY+CN +GHFAREC     VS RD   +    K  K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396


>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 254

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
 Frame = +1

Query: 310 EEADRCYRCNGTGHIARECAQSPDEPS-----CYNCNKTGHIARNCPEGGR-ESATQTCY 471
           +EA+ C RC G GH    C             CY CN  GH+   C E G  +S T +CY
Sbjct: 23  DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80

Query: 472 NCNKSGHISRNC-----PDGTKTCYVCGKPGHISREC 567
            C + GH    C        + +C++CG+ GH   +C
Sbjct: 81  RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
 Frame = +1

Query: 253 QREKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGHIARECAQSPDEP-----SCY 396
           + E C +C   GH    CK E         +CY CN  GH+   C   P        SCY
Sbjct: 24  EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL---CCIEPGHTQSWTVSCY 80

Query: 397 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCY 531
            C + GH    C     +S + +C+ C + GH    C +    C+
Sbjct: 81  RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCF 125



 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 40/143 (27%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 348
           CY+C + GH    C   G    DS        CF C R GHF   C      C+  + + 
Sbjct: 79  CYRCGQLGHTGLAC---GRHYDDS----VSPSCFICGREGHFEHQCHNSFSVCFPEDSSE 131

Query: 349 HIARECAQSPDEPSCYNCNKT-----GHIARNCPEGGRE-----SATQTCYNCNKSGHIS 498
               EC Q PD  S      T     GH    CP+         S  +   + N S   +
Sbjct: 132 D---EC-QGPDSSSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKST 187

Query: 499 RNCPDGTKTCYVCGKPGHISREC 567
               +  + CY C   GHI+R+C
Sbjct: 188 SKGRETRRLCYECKGKGHIARDC 210



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 32/131 (24%), Positives = 44/131 (33%), Gaps = 10/131 (7%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD-----RCYR 333
           CY CN  GH    C + G              C++C + GH    C    D      C+ 
Sbjct: 55  CYVCNSLGHLC--CIEPGHT------QSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFI 106

Query: 334 CNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHIS 498
           C   GH   +C  S     P++ S   C      +    E  RE          + GH  
Sbjct: 107 CGREGHFEHQCHNSFSVCFPEDSSEDECQGPDSSSVRFQENTRE---------EEEGHFE 157

Query: 499 RNCPDGTKTCY 531
             CPD +  C+
Sbjct: 158 HQCPDSSSVCF 168



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
 Frame = +1

Query: 157 SSSVCYKCN----RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR 324
           SSSV ++ N      GHF  +C     V      +R+ E     N +       +E    
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCFQE-ISRE-EGFISLNSSSKSTSKGRETRRL 196

Query: 325 CYRCNGTGHIARECAQS 375
           CY C G GHIAR+C  S
Sbjct: 197 CYECKGKGHIARDCPNS 213



 Score = 30.7 bits (66), Expect = 0.87
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 94  SLNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 228
           S  + +IS+ S+ + +     +  +CY+C   GH AR+C     V
Sbjct: 172 SREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216


>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 393

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 12/140 (8%)
 Frame = +1

Query: 184 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARE 363
           +TG F++      ++ RD   + QR    K  +    AR    E+ + +  N      R 
Sbjct: 200 KTGLFSKRMK---IIHRDPVLHAQRVAAIKKAKGTPAARKHASESMKAFFSNPVNREQRS 256

Query: 364 CAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCYNCNKSGHISRNCP-------DGT 519
            +    +  C NC + GH    CPE G  +  +  C  C   GH  R CP        G 
Sbjct: 257 LSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGI 316

Query: 520 KT----CYVCGKPGHISREC 567
            T    C +CG+ GH SR C
Sbjct: 317 STRYHKCGICGERGHNSRTC 336



 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 35/125 (28%), Positives = 46/125 (36%), Gaps = 11/125 (8%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD--------- 321
           C  C + GH    C + G  + D  F     +C  C   GH  R C +            
Sbjct: 266 CKNCGQEGHRRHYCPELGT-NADRKF-----RCRGCGGKGHNRRTCPKSKSIVTKGISTR 319

Query: 322 --RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHI 495
             +C  C   GH +R C +    P+  N + +G    N  E G    T  C  C K GH 
Sbjct: 320 YHKCGICGERGHNSRTCRK----PTGVNPSCSGE---NSGEDGVGKITYACGFCKKMGHN 372

Query: 496 SRNCP 510
            R CP
Sbjct: 373 VRTCP 377



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 39/124 (31%), Positives = 46/124 (37%), Gaps = 11/124 (8%)
 Frame = +1

Query: 265 CFKCNRTGHFARDCKE---EADRCYRCNGTG---HIARECAQSPDEPSCYNCNKTGHIAR 426
           C  C + GH    C E    ADR +RC G G   H  R C +S    +    +   H   
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVT-KGISTRYHKCG 324

Query: 427 NCPEGGRESAT---QTCYNCNKSGHISRNCPDG--TKTCYVCGKPGHISRECDEARN*PQ 591
            C E G  S T    T  N + SG  S     G  T  C  C K GH  R C   +    
Sbjct: 325 ICGERGHNSRTCRKPTGVNPSCSGENSGEDGVGKITYACGFCKKMGHNVRTCPSKQVSDS 384

Query: 592 PPCL 603
             CL
Sbjct: 385 DSCL 388


>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 284

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 262 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 378
           +CF C   GH+ARDC   +  ++CYRC   GHI R C  SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140



 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
 Frame = +1

Query: 409 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 561
           T   +R  P G R++ ++        C+NC   GH +R+C  G     CY CG+ GHI R
Sbjct: 75  TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134

Query: 562 ECDEARN*PQP 594
            C   +N P P
Sbjct: 135 NC---KNSPSP 142



 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +1

Query: 322 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 432
           RC+ C   GH AR+C     +  CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 19/44 (43%), Positives = 24/44 (54%)
 Frame = +1

Query: 376 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 507
           P    C+NC   GH AR+C  G  ++    CY C + GHI RNC
Sbjct: 96  PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 160 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 309
           S  C+ C   GH+AR+CT G            + KC++C   GH  R+CK
Sbjct: 98  SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137


>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 243

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 262 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 378
           +CF C   GH+ARDC   +  ++CYRC   GHI R C  SP
Sbjct: 59  RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99



 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
 Frame = +1

Query: 409 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 561
           T   +R  P G R++ ++        C+NC   GH +R+C  G     CY CG+ GHI R
Sbjct: 34  TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93

Query: 562 ECDEARN*PQP 594
            C   +N P P
Sbjct: 94  NC---KNSPSP 101



 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +1

Query: 322 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 432
           RC+ C   GH AR+C     +  CY C + GHI RNC
Sbjct: 59  RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 19/44 (43%), Positives = 24/44 (54%)
 Frame = +1

Query: 376 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 507
           P    C+NC   GH AR+C  G  ++    CY C + GHI RNC
Sbjct: 55  PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 160 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 309
           S  C+ C   GH+AR+CT G            + KC++C   GH  R+CK
Sbjct: 57  SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96


>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 249

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 262 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 378
           +CF C   GH+ARDC   +  ++CYRC   GHI R C  SP
Sbjct: 59  RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +1

Query: 316 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 474
           A RC+ C   GH AR+C     +  CY C + GHI RNC    ++      Y+
Sbjct: 57  AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = +1

Query: 376 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 522
           P    C+NC   GH AR+C  G  ++    CY C + GHI RNC +  K
Sbjct: 55  PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 100



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
 Frame = +1

Query: 409 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 561
           T   +R  P G R+  ++        C+NC   GH +R+C  G     CY CG+ GHI R
Sbjct: 34  TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93

Query: 562 EC 567
            C
Sbjct: 94  NC 95



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 333
           C+ C   GH+AR+CT G            + KC++C   GH  R+CK    +  R
Sbjct: 60  CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 104


>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 260

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 262 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 378
           +CF C   GH+ARDC   +  ++CYRC   GHI R C  SP
Sbjct: 70  RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 110



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +1

Query: 316 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 474
           A RC+ C   GH AR+C     +  CY C + GHI RNC    ++      Y+
Sbjct: 68  AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = +1

Query: 376 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 522
           P    C+NC   GH AR+C  G  ++    CY C + GHI RNC +  K
Sbjct: 66  PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 111



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
 Frame = +1

Query: 409 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 561
           T   +R  P G R+  ++        C+NC   GH +R+C  G     CY CG+ GHI R
Sbjct: 45  TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 104

Query: 562 EC 567
            C
Sbjct: 105 NC 106



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 333
           C+ C   GH+AR+CT G            + KC++C   GH  R+CK    +  R
Sbjct: 71  CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 115


>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 290

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 262 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 378
           +CF C   GH+ARDC   +  ++CYRC   GHI R C  SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +1

Query: 316 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 474
           A RC+ C   GH AR+C     +  CY C + GHI RNC    ++      Y+
Sbjct: 98  AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = +1

Query: 376 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 522
           P    C+NC   GH AR+C  G  ++    CY C + GHI RNC +  K
Sbjct: 96  PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 141



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
 Frame = +1

Query: 409 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 561
           T   +R  P G R+  ++        C+NC   GH +R+C  G     CY CG+ GHI R
Sbjct: 75  TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134

Query: 562 EC 567
            C
Sbjct: 135 NC 136



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 333
           C+ C   GH+AR+CT G            + KC++C   GH  R+CK    +  R
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 145


>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 119

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
 Frame = +1

Query: 379 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCPDGTKT-------CYV 534
           D  +CY C K GH AR+C    +  +A  TCY C++ GH S  CP+           CY 
Sbjct: 32  DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYW 91

Query: 535 CGKPGH 552
           CG   H
Sbjct: 92  CGNQDH 97



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
 Frame = +1

Query: 325 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNCNKS 486
           CY+C   GH AR C     P     +CY C++ GH +  CP    +       CY C   
Sbjct: 36  CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95

Query: 487 GH 492
            H
Sbjct: 96  DH 97



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = +1

Query: 460 QTCYNCNKSGHISRNCPDGTK------TCYVCGKPGHISRECDEAR 579
           + CY C K GH +R+C   T+      TCY C + GH S  C   R
Sbjct: 34  RACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKR 79



 Score = 37.1 bits (82), Expect = 0.010
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 348
           CYKC + GHFAR C    VV++ +        C+ C+  GH +  C  +  R  + N  G
Sbjct: 36  CYKCGKLGHFARSC---HVVTQPT---TAYITCYFCSEEGHRSNGCPNK--RTDQVNPKG 87

Query: 349 H 351
           H
Sbjct: 88  H 88


>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
           contains Pfam domains PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 203

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
 Frame = +1

Query: 217 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRC------------YRCNGTGHIAR 360
           GG   R  G  R    C+KC   GH ARDC E                 Y   G G+   
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG 174

Query: 361 ECAQSPDEPSCYNCNKTGHIARNCPEGGR 447
                    SCY+C ++GH AR+C  GGR
Sbjct: 175 GRGGGGGGGSCYSCGESGHFARDCTSGGR 203



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +1

Query: 163 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA--RDCKEEADRCYRC 336
           S CYKC   GH AR+C++GG      G        +     G+    R        CY C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188

Query: 337 NGTGHIAREC 366
             +GH AR+C
Sbjct: 189 GESGHFARDC 198



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
 Frame = +1

Query: 391 CYNCNKTGHIARNCPEGGRESATQTC-------YNCNKSGHIS--RNCPDGTKTCYVCGK 543
           CY C + GH+AR+C EGG               Y     G+    R    G  +CY CG+
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190

Query: 544 PGHISREC 567
            GH +R+C
Sbjct: 191 SGHFARDC 198



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGG 222
           CY C  +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202



 Score = 35.1 bits (77), Expect = 0.040
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 514 GTKTCYVCGKPGHISRECDE 573
           G   CY CG+PGH++R+C E
Sbjct: 127 GGSDCYKCGEPGHMARDCSE 146



 Score = 31.1 bits (67), Expect = 0.65
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 439 GGRESATQTCYNCNKSGHISRNCPDG 516
           GG       CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147


>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
           glycine-rich protein (GRP2) identical to Glycine-rich
           protein 2b (AtGRP2b) [Arabidopsis thaliana]
           SWISS-PROT:Q38896; contains Pfam domains PF00313:
           'Cold-shock' DNA-binding domain and PF00098: Zinc
           knuckle
          Length = 201

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = +1

Query: 217 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 390
           GG  S   G       CFKC   GH AR+C +         G G               S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181

Query: 391 CYNCNKTGHIARNCPEGG 444
           CY+C ++GH AR+C  GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199



 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 22/64 (34%), Positives = 33/64 (51%)
 Frame = +1

Query: 325 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 504
           C++C   GH+AREC+Q       Y+    G    +   GG      +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194

Query: 505 CPDG 516
           C  G
Sbjct: 195 CTSG 198



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQ-GGVVSRDSGFNRQRE-----------KCFKCNRTGHFARDC 306
           C+KC   GH AREC+Q GG  S   G  R               C+ C  +GHFARDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +1

Query: 388 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 567
           SC+ C + GH+AR C +GG   +         SG        G  +CY CG+ GH +R+C
Sbjct: 137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGG-GGGGGGGGLSCYSCGESGHFARDC 195



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGG 222
           CY C  +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199



 Score = 34.7 bits (76), Expect = 0.053
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 514 GTKTCYVCGKPGHISRECDE 573
           G  +C+ CG+PGH++REC +
Sbjct: 134 GDNSCFKCGEPGHMARECSQ 153



 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 412 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 516
           G+  R     G      +C+ C + GH++R C  G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154


>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 260

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +1

Query: 463 TCYNCNKSGHISRNCPDGT---KTCYVCGKPGHISREC 567
           TCY+C +  HI+ +CP  T   K+C++C    H +R+C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFICASLEHGARQC 181



 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/84 (21%), Positives = 26/84 (30%)
 Frame = +1

Query: 331 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 510
           +      I   C +  DE      N    + R   E G  ++        +         
Sbjct: 85  KLEAANEIVTHCVERQDED-----NMVEDVVRGEEEDGETTSNSVMTKLLRGARYFDPLD 139

Query: 511 DGTKTCYVCGKPGHISRECDEARN 582
            G  TCY CG+  HI+  C    N
Sbjct: 140 AGWVTCYSCGEKDHITVSCPTLTN 163


>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +1

Query: 217 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 321
           GG  SR  G     ++CFKC R GH+ARDC    D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135



 Score = 31.5 bits (68), Expect = 0.50
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGG 222
           C+KC R GH+AR+C   G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134



 Score = 31.1 bits (67), Expect = 0.65
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 382 EPSCYNCNKTGHIARNCPEGG 444
           E  C+ C + GH AR+CP  G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134



 Score = 30.7 bits (66), Expect = 0.87
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 286 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 384
           G ++   K   D C++C   GH AR+C  + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +1

Query: 403 NKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 567
           NK   + +  P+ G E   Q      K G  S         C+ C +PGH +R+C
Sbjct: 80  NKVISVNKAEPKVGGEDVDQL----KKGGGYSSRGKGTEDECFKCRRPGHWARDC 130


>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +1

Query: 217 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 321
           GG  SR  G     ++CFKC R GH+ARDC    D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135



 Score = 31.5 bits (68), Expect = 0.50
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGG 222
           C+KC R GH+AR+C   G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134



 Score = 31.1 bits (67), Expect = 0.65
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 382 EPSCYNCNKTGHIARNCPEGG 444
           E  C+ C + GH AR+CP  G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134



 Score = 30.7 bits (66), Expect = 0.87
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 286 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 384
           G ++   K   D C++C   GH AR+C  + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +1

Query: 403 NKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 567
           NK   + +  P+ G E   Q      K G  S         C+ C +PGH +R+C
Sbjct: 80  NKVISVNKAEPKVGGEDVDQL----KKGGGYSSRGKGTEDECFKCRRPGHWARDC 130


>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
           to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
           sylvestris]; contains Pfam profile: PF00076 RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 245

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 9/40 (22%)
 Frame = +1

Query: 232 RDSGFNRQREK---------CFKCNRTGHFARDCKEEADR 324
           RD G++R R +         CFKC + GHFAR+C  E+ R
Sbjct: 100 RDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139



 Score = 34.3 bits (75), Expect = 0.070
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGGVVSRDSG 243
           C+KC + GHFAREC      SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142



 Score = 33.1 bits (72), Expect = 0.16
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 514 GTKTCYVCGKPGHISREC 567
           G   C+ CGKPGH +REC
Sbjct: 116 GGGDCFKCGKPGHFAREC 133



 Score = 30.7 bits (66), Expect = 0.87
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
 Frame = +1

Query: 391 CYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGTK 522
           C+ C K GH AR CP       GGR S+    Y+     + +++   G K
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAK 169



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 214 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 366
           QGG   RD+  +R R++ +  +R+             C++C   GH AREC
Sbjct: 87  QGGA-GRDNDGDRGRDRGYDRDRSRPSGG---RGGGDCFKCGKPGHFAREC 133


>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 154 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 258
           +  S CY+C   GHFAREC +G G V R S   R+R
Sbjct: 86  IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121



 Score = 32.7 bits (71), Expect = 0.21
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 214 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 309
           +GG   R  G   +  KC++C   GHFAR+C+
Sbjct: 76  RGGGGGRRGGI--EDSKCYECGELGHFARECR 105



 Score = 31.5 bits (68), Expect = 0.50
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 226 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 366
           + R +G+  +     K  R G   R    E  +CY C   GH AREC
Sbjct: 58  LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 379 DEPSCYNCNKTGHIARNCPEG 441
           ++  CY C + GH AR C  G
Sbjct: 87  EDSKCYECGELGHFARECRRG 107



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 526 CYVCGKPGHISRECDEAR 579
           CY CG+ GH +REC   R
Sbjct: 91  CYECGELGHFARECRRGR 108



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +1

Query: 439 GGRESATQT--CYNCNKSGHISRNCPDG 516
           GGR    +   CY C + GH +R C  G
Sbjct: 80  GGRRGGIEDSKCYECGELGHFARECRRG 107


>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 154 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 258
           +  S CY+C   GHFAREC +G G V R S   R+R
Sbjct: 86  IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121



 Score = 32.7 bits (71), Expect = 0.21
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 214 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 309
           +GG   R  G   +  KC++C   GHFAR+C+
Sbjct: 76  RGGGGGRRGGI--EDSKCYECGELGHFARECR 105



 Score = 31.5 bits (68), Expect = 0.50
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 226 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 366
           + R +G+  +     K  R G   R    E  +CY C   GH AREC
Sbjct: 58  LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 379 DEPSCYNCNKTGHIARNCPEG 441
           ++  CY C + GH AR C  G
Sbjct: 87  EDSKCYECGELGHFARECRRG 107



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 526 CYVCGKPGHISRECDEAR 579
           CY CG+ GH +REC   R
Sbjct: 91  CYECGELGHFARECRRGR 108



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +1

Query: 439 GGRESATQT--CYNCNKSGHISRNCPDG 516
           GGR    +   CY C + GH +R C  G
Sbjct: 80  GGRRGGIEDSKCYECGELGHFARECRRG 107


>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
           SR protein (SRZ22) identical to RSZp22 protein
           [Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
           SR protein [Arabidopsis thaliana] GI:3435094; contains
           Pfam profiles PF00076: RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
           identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
          Length = 200

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 258
           CY+C  TGHFAREC   G   R    +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130



 Score = 33.9 bits (74), Expect = 0.093
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 262 KCFKCNRTGHFARDCK 309
           KC++C  TGHFAR+C+
Sbjct: 100 KCYECGETGHFARECR 115



 Score = 31.5 bits (68), Expect = 0.50
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 439 GGRESATQTCYNCNKSGHISRNC 507
           GGR  +   CY C ++GH +R C
Sbjct: 92  GGRGGSDLKCYECGETGHFAREC 114



 Score = 31.1 bits (67), Expect = 0.65
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 322 RCYRCNGTGHIAREC 366
           +CY C  TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 391 CYNCNKTGHIARNCPEGG 444
           CY C +TGH AR C   G
Sbjct: 101 CYECGETGHFARECRNRG 118



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 526 CYVCGKPGHISREC 567
           CY CG+ GH +REC
Sbjct: 101 CYECGETGHFAREC 114


>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
           XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 947

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +1

Query: 253 QREKCFKCNRTGHFARDC 306
           Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 352 IARECAQSP-DEPSCYNCNKTGHIARNCP 435
           I RE    P  +  C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 508 PDGTKTCYVCGKPGHISREC 567
           P   + C+VCG+ GH + +C
Sbjct: 259 PGQQEKCFVCGQTGHFASDC 278



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 169 CYKCNRTGHFAREC 210
           C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278


>At2g24590.1 68415.m02936 splicing factor, putative similar to to
           RSZp22 protein [Arabidopsis thaliana]
           gi|2582645|emb|CAA05352
          Length = 196

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 169 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 258
           CY+C  +GHFAREC ++GG   R    +R R
Sbjct: 98  CYECGESGHFARECRSRGGSGGRRRSRSRSR 128



 Score = 32.7 bits (71), Expect = 0.21
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 217 GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCK 309
           GG    D G  R     KC++C  +GHFAR+C+
Sbjct: 80  GGRGGGDGGRGRGGSDLKCYECGESGHFARECR 112



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 442 GRESATQTCYNCNKSGHISRNC 507
           GR  +   CY C +SGH +R C
Sbjct: 90  GRGGSDLKCYECGESGHFAREC 111



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 322 RCYRCNGTGHIAREC 366
           +CY C  +GH AREC
Sbjct: 97  KCYECGESGHFAREC 111



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 526 CYVCGKPGHISREC 567
           CY CG+ GH +REC
Sbjct: 98  CYECGESGHFAREC 111



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 391 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 510
           CY C ++GH AR C   G     +   + ++S    R  P
Sbjct: 98  CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137


>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 831

 Score = 35.1 bits (77), Expect = 0.040
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +1

Query: 265 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 435
           CF C + GH  RDC E  D   R +   +I+    +      C  C +  H A  CP
Sbjct: 604 CFYCGKKGHCLRDCLEVTDTELR-DLVQNISVRNGREEASSLCIRCFQLSHWAATCP 659



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
 Frame = +1

Query: 343 TGHIARECAQSPDEPSCYNCNKTGHIARNCPE----------------GGRESATQTCYN 474
           +G +A    +   +  C+ C K GH  R+C E                 GRE A+  C  
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIR 647

Query: 475 CNKSGHISRNCPD 513
           C +  H +  CP+
Sbjct: 648 CFQLSHWAATCPN 660



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
 Frame = +1

Query: 166 VCYKCNRTGHFARECTQ------GGVVSRDSGFNRQREK---CFKCNRTGHFARDC 306
           +C+ C + GH  R+C +        +V   S  N + E    C +C +  H+A  C
Sbjct: 603 ICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIRCFQLSHWAATC 658


>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
           protein low similarity to nucleolar phosphoprotein
           (Nopp52), Tetrahymena thermophila, EMBL:TT51555;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 597

 Score = 35.1 bits (77), Expect = 0.040
 Identities = 33/148 (22%), Positives = 51/148 (34%), Gaps = 11/148 (7%)
 Frame = +1

Query: 157 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNR-QREKCFKCNRTGHFARDCKEEADRCYR 333
           +S   Y  N T     E   GG  +   G  + +R  C++C   GH +  C  +      
Sbjct: 444 NSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSH 503

Query: 334 CNGT-GHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT------CYNCNKSGH 492
            N T  H   E    P + + Y+  K      N      + +  T        N      
Sbjct: 504 TNSTLDHQTVEA--GPTQVTSYSLQKKTRDTENNGGSFMDESYATVPISIDVTNGANDAS 561

Query: 493 ISRNCPDG---TKTCYVCGKPGHISREC 567
           ++     G    + CY CG+ GH+S  C
Sbjct: 562 LTSAVSTGKIKKRNCYECGEKGHLSSAC 589



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 22/105 (20%), Positives = 36/105 (34%)
 Frame = +1

Query: 253 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 432
           +R  C++C   GH +  C  +  +         + +E          Y   K    +   
Sbjct: 393 KRRVCYECGEKGHLSTACPIKLQKADD-QANSKLGQETVDGRPAMQSYGLPKNSGDSYYM 451

Query: 433 PEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 567
            E    ++T   YN   S           + CY CG+ GH+S  C
Sbjct: 452 NE--TYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTAC 494



 Score = 30.7 bits (66), Expect = 0.87
 Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 8/160 (5%)
 Frame = +1

Query: 58  NYNLFVNS*DN*SLNDRYISVLSAQE--FSKPIAMSSSV----CYKCNRTGHFARECT-- 213
           +Y L  NS D+  +N+ Y S        +S     +  V    CY+C   GH +  C   
Sbjct: 438 SYGLPKNSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIK 497

Query: 214 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSC 393
                  +S  + Q  +      T +  +    + +     NG   +    A  P     
Sbjct: 498 LQNTSHTNSTLDHQTVEAGPTQVTSYSLQKKTRDTEN----NGGSFMDESYATVPISIDV 553

Query: 394 YNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPD 513
            N      +      G  +   + CY C + GH+S  CP+
Sbjct: 554 TNGANDASLTSAVSTG--KIKKRNCYECGEKGHLSSACPN 591


>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
          Length = 310

 Score = 34.7 bits (76), Expect = 0.053
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +1

Query: 259 EKCFKCNRTGHFARDC 306
           ++CFKC R GH+ARDC
Sbjct: 126 DECFKCGRVGHWARDC 141



 Score = 32.7 bits (71), Expect = 0.21
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGG 222
           C+KC R GH+AR+C   G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145



 Score = 32.3 bits (70), Expect = 0.28
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 382 EPSCYNCNKTGHIARNCPEGG 444
           E  C+ C + GH AR+CP  G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 439 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 576
           GGR+S        +  G        G   C+ CG+ GH +R+C  A
Sbjct: 99  GGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSA 144



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 319 DRCYRCNGTGHIAREC 366
           D C++C   GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141


>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
           contains Pfam profile: PF00098 zinc knuckle
          Length = 262

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
 Frame = +1

Query: 391 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNCPDG 516
           C+NC    H+ARNC       P+    S +   +  N  G    NC DG
Sbjct: 88  CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
 Frame = +1

Query: 325 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 459
           C+ C    H+AR C       PD       P  +  N  G    NC +GG  S T
Sbjct: 88  CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142


>At4g19130.1 68417.m02823 replication protein-related similar to
           replication protein A 70kDa [Oryza sativa] GI:13536993;
           contains Pfam profile PF00098: Zinc knuckle
          Length = 461

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 397 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 522
           + +++G    +   GG   AT +C  C  SGH+S  CP  TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 472 NCNKSGHISRNCPDG--TKTCYVCGKPGHISRECDEA 576
           + ++SG    +   G  T +C VCG  GH+S +C  A
Sbjct: 392 HAHQSGQSGNHYSGGGATTSCNVCGNSGHVSAKCPGA 428


>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 282

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 265 CFKCNRTGHFARDCKEEA 318
           CFKC R GH++RDC   A
Sbjct: 8   CFKCGRPGHWSRDCPSSA 25



 Score = 31.5 bits (68), Expect = 0.50
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 448 ESATQTCYNCNKSGHISRNCP 510
           ESA   C+ C + GH SR+CP
Sbjct: 2   ESAPTGCFKCGRPGHWSRDCP 22



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 526 CYVCGKPGHISREC 567
           C+ CG+PGH SR+C
Sbjct: 8   CFKCGRPGHWSRDC 21



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQGGVVS 231
           C+KC R GH++R+C     V+
Sbjct: 8   CFKCGRPGHWSRDCPSSAPVA 28



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +1

Query: 391 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 504
           C+ C + GH +R+CP     +   +  + +    I  N
Sbjct: 8   CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45


>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
           identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
           4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
           thaliana}
          Length = 702

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +3

Query: 378 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 521
           G +VV  LQ DGPH   ++R   G   AD+L   Q  P L   + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625


>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
           Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
          Length = 97

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 322 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 444
           RC  CNGTG +   C++ S  +  C  C+ +G  A  NC   G
Sbjct: 37  RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79


>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain, PF00098: Zinc knuckle
          Length = 747

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 445 RESATQTCYNCNKSGHISRNCPD 513
           RES   +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 523 TCYVCGKPGHISRECDEAR 579
           +C++CGK GH + +C + R
Sbjct: 727 SCFICGKSGHRATDCPDKR 745



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 388 SCYNCNKTGHIARNCPE 438
           SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743


>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
           XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
          Length = 1020

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 253 QREKCFKCNRTGHFARDCK 309
           Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +1

Query: 352 IARECAQSPDEPS-CYNCNKTGHIARNC 432
           I RE   +P +   C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277


>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 1080

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 433 PEGGRESATQTCYNCNKSGHISRNC 507
           P    + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939



 Score = 31.5 bits (68), Expect = 0.50
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 496 SRNCPDGTKTCYVCGKPGHISREC 567
           S    D  K CY C K GH++R+C
Sbjct: 916 SEETDDAVKICYRCKKVGHLARDC 939



 Score = 30.7 bits (66), Expect = 0.87
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 166 VCYKCNRTGHFAREC 210
           +CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939



 Score = 30.7 bits (66), Expect = 0.87
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +1

Query: 265 CFKCNRTGHFARDC--KEEAD 321
           C++C + GH ARDC  KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 391 CYNCNKTGHIARNC 432
           CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 325 CYRCNGTGHIAREC 366
           CYRC   GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939


>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
           family protein / zinc knuckle (CCHC-type) family protein
           contains Pfam domains PF00098: Zinc knuckle, PF04046:
           PSP
          Length = 532

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +1

Query: 379 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 486
           D P C+NC    H  R CP     SA  +     KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +1

Query: 310 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 444
           ++  RC+ C G  H  REC +  D  +  +  K     RN    G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282


>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 474

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 382 EPSCYNCNKTGHIARNCPEGGRESATQ 462
           E +CY C + GHIA+ CP   RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248



 Score = 30.7 bits (66), Expect = 0.87
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 463 TCYNCNKSGHISRNCPDGTKTCYV 534
           TCY C + GHI++ CP    T  V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249


>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
           to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
           (ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
          Length = 711

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 378 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 521
           G +VV   Q DGPH   ++R   G   AD+L   Q  P L   + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637


>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
           to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
           (ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
          Length = 711

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 378 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 521
           G +VV   Q DGPH   ++R   G   AD+L   Q  P L   + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637


>At3g31950.1 68416.m04046 hypothetical protein
          Length = 507

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
 Frame = +1

Query: 331 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRESATQTCYNCNKSGHIS 498
           R      + R+ A +P +  C  C  T H+  +C    P          CY C   GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326

Query: 499 RNCP 510
             CP
Sbjct: 327 MYCP 330



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
 Frame = +1

Query: 256 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 366
           +  C  C  T H   DC          +   +CY C G GH++  C
Sbjct: 284 KRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYC 329


>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
           similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
           [Methylovorus sp.]
          Length = 419

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
 Frame = +1

Query: 310 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 480
           E  ++C  C G G +      +  EP  Y  N+    +     G    ++ +   C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255

Query: 481 KSGHISRNCPD----GTKTCYVCGKPGHI 555
             G +   CP     G   C  C   G +
Sbjct: 256 GKGKLP--CPTCQSRGLIKCQTCDSTGSL 282


>At5g08730.1 68418.m01037 IBR domain-containing protein contains
           similarity to Swiss-Prot:Q94981 ariadne-1 protein
           (Ari-1) [Drosophila melanogaster]
          Length = 500

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +1

Query: 430 CPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 576
           CP  G E A +   + N+   IS  C  G   C+ CG   H    C +A
Sbjct: 169 CPASGCEYAVELQEDGNEDNVISVVCLCGHTFCWTCGLESHRPVSCKKA 217


>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
           family protein low similarity to phosphatidylinositol
           3,5-kinase [Candida albicans] GI:14571648; contains Pfam
           profile PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase
          Length = 1648

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +1

Query: 298 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 474
           RDC+  A  RCY   G    AR C +    PS  N   +  I     E G  SA    ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180

Query: 475 CNKS 486
           C  S
Sbjct: 181 CKSS 184


>At5g51300.2 68418.m06360 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
 Frame = +1

Query: 466 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 567
           C  C + GH    CP  T T      C +CG  GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
 Frame = +1

Query: 379 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 510
           DE  C  C + GH    CP       +   C  C   GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403


>At5g51300.1 68418.m06359 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
 Frame = +1

Query: 466 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 567
           C  C + GH    CP  T T      C +CG  GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
 Frame = +1

Query: 379 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 510
           DE  C  C + GH    CP       +   C  C   GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403


>At5g47430.1 68418.m05844 expressed protein 
          Length = 879

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 331 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 444
           R NG G    E    P    C+ CN  GH  ++CP  G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 166 VCYKCNRTGHFARECTQGG 222
           VC++CN  GHF + C   G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227


>At5g47390.1 68418.m05840 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 365

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 457 TQTCYNCNKSGHISRNCPD 513
           T+ C +CN +GH SR CP+
Sbjct: 2   TRRCSHCNHNGHNSRTCPN 20



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 391 CYNCNKTGHIARNCPEGG 444
           C +CN  GH +R CP  G
Sbjct: 5   CSHCNHNGHNSRTCPNRG 22


>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 341

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 139 SKPIAMSSSVCYKCNRTGHFAREC 210
           +KP   + SVCY+C    H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291


>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
           SP|Q9S5A3 Chaperone protein dnaJ {Listeria
           monocytogenes}; contains Pfam profiles PF00226 DnaJ
           domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
           central domain (4 repeats)
          Length = 447

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +1

Query: 319 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGH 492
           + C  CNG+G      A++  +P+ C  C   G +  +     G      TC  CN +G 
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281

Query: 493 ISRNC 507
           IS+ C
Sbjct: 282 ISKPC 286


>At4g17410.1 68417.m02607 expressed protein 
          Length = 744

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 166 VCYKCNRTGHFARECTQGG 222
           VC++CN +GHF + C+  G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138


>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
           contains Pfam profile PF00098: Zinc knuckle
          Length = 200

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 352 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 504
           ++R+ ++S  E  +C+ C + GH   +CP    E   +  Y   ++    RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 388 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK-TCYVCGKPGHISRE 564
           S  N N    + +     G +   +  +   +S    R+   G K  C++CG+ GH   +
Sbjct: 114 SVENQNLRKKLMKEKTAAGYKETAEELHVRRRSVSRDRSKSKGEKGACWICGEDGHYKND 173

Query: 565 CDEARN*PQP 594
           C  +RN  +P
Sbjct: 174 C-PSRNSEKP 182


>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 373

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
 Frame = +1

Query: 358 RECAQSPDEPSCYNCNKTGHIARNCPE---GGRESAT---QTCYNCNKSGHISRN----- 504
           R C     +  C NC    H   +C E    GRE  T   + C +C     +S       
Sbjct: 267 RRCCYKCRKHFCINCKVPWHSNLSCKEHKSSGREPITTVWRQCRSCLHKIKLSEERMPVT 326

Query: 505 CPDGTKTCYVCG 540
           C  G K CY CG
Sbjct: 327 CRCGYKFCYACG 338


>At3g16350.1 68416.m02068 myb family transcription factor ; contains
           Pfam profile: PF00249 Myb-like DNA-binding domain
          Length = 387

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 457 TQTCYNCNKSGHISRNCPD-GTKTCYVCGKPG 549
           T+ C +C+ +GH SR CP  G  TC   G  G
Sbjct: 2   TRRCSHCSNNGHNSRTCPTRGGGTCGGSGGGG 33


>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
           family protein / zinc knuckle (CCHC-type) family protein
           contains Pfam domains PF00098: Zinc knuckle, PF04046:
           PSP
          Length = 403

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +1

Query: 310 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 447
           ++  RC+ C    H  REC +  D  +  N  +     RN   G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +1

Query: 379 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 522
           D P C+NC    H  R CP     SA     N  +     RN   G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
 Frame = +1

Query: 262 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 396
           +CF C    H  R+C    DR    N      R+  Q+P    PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243


>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
           family protein / zinc knuckle (CCHC-type) family protein
           contains Pfam domains PF00098: Zinc knuckle, PF04046:
           PSP
          Length = 405

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +1

Query: 310 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 447
           ++  RC+ C    H  REC +  D  +  N  +     RN   G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +1

Query: 379 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 522
           D P C+NC    H  R CP     SA     N  +     RN   G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
 Frame = +1

Query: 262 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 396
           +CF C    H  R+C    DR    N      R+  Q+P    PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243


>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
           putative
          Length = 506

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 307 KEEADRCYRCNGTGHIARECAQSP 378
           K + + C++C  T HIA++C   P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 265 CFKCNRTGHFARDC 306
           CFKC  T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 169 CYKCNRTGHFARECTQG 219
           C+KC  T H A++C  G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358


>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
           similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
           [Drosophila melanogaster]
          Length = 926

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 412 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 510
           G    N  +G     +  C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +1

Query: 391 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCG 540
           C +C + GH + NCP     S      N   +    RN  + T +C  CG
Sbjct: 767 CIHCQQRGHASTNCP-----SRVPASRNSRPTATNPRN-DESTVSCNTCG 810


>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
           protein low similarity to splicing factor SC35
           [Arabidopsis thaliana] GI:9843653; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 261

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
 Frame = +1

Query: 472 NCNKSGHISRNCPDGTKTCYVCGKPGHISRECDE----ARN*PQPP 597
           N   S  I +        CY CG  GH+S EC +     R  P PP
Sbjct: 136 NGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRERPPPP 181



 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 127 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 237
           A EF  K +    S CY+C   GH + EC +  +  R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176



 Score = 28.3 bits (60), Expect = 4.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 310 EEADRCYRCNGTGHIARECAQS 375
           ++  RCY C   GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170



 Score = 28.3 bits (60), Expect = 4.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 379 DEPSCYNCNKTGHIARNCPE 438
           D+  CY C   GH++  CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 466 CYNCNKSGHISRNCP 510
           CY C   GH+S  CP
Sbjct: 154 CYECGDEGHLSYECP 168


>At2g16690.1 68415.m01915 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 240

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 217 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 306
           G VVS    + R R++CF C R  H   DC
Sbjct: 188 GEVVSVTFDYERIRKRCFFCQRLTHDKADC 217


>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
           Pfam PF00684 : DnaJ central domain (4 repeats); similar
           to bundle sheath defective protein 2 (GI:4732091) [Zea
           mays]
          Length = 154

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +1

Query: 307 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 486
           +E    C+ CNGTG      AQ      C  C  +G++      GG E     C NC+ +
Sbjct: 81  RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127

Query: 487 GHIS 498
           G ++
Sbjct: 128 GSLT 131


>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
           protein similar to Sin3 protein [Yarrowia lipolytica]
           GI:18076824; contains Pfam profile PF02671: Paired
           amphipathic helix repeat
          Length = 1173

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
 Frame = +1

Query: 184 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARD---------CKEEADRCYRC 336
           R+    + C + G  ++    + ++E C K +     A +         C EE +R   C
Sbjct: 778 RSNKDKQSCDKKGAKNKTRAEDDKQENCHKLSENNKTASEMLVSGTKVSCHEENNRVMNC 837

Query: 337 NGTGHIARECA 369
           NG G +A E A
Sbjct: 838 NGRGSVAGEMA 848


>At5g61670.2 68418.m07738 expressed protein
          Length = 307

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
 Frame = +1

Query: 307 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 462
           ++E  RC  C GTG++A           C  C+ TG +    P     GG  S     T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272

Query: 463 TCYNCNKSGHISRNCP 510
            C NC+ +G +   CP
Sbjct: 273 RCSNCSGAGKVM--CP 286


>At5g61670.1 68418.m07737 expressed protein
          Length = 307

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
 Frame = +1

Query: 307 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 462
           ++E  RC  C GTG++A           C  C+ TG +    P     GG  S     T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272

Query: 463 TCYNCNKSGHISRNCP 510
            C NC+ +G +   CP
Sbjct: 273 RCSNCSGAGKVM--CP 286


>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 418

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 217 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 306
           G +VS    + R R++CF C R  H   DC
Sbjct: 188 GEIVSVTFDYERIRKRCFLCQRLTHEKGDC 217


>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
           contains INTERPRO domain, IPR001878: Zn-finger CCHC type
          Length = 353

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 466 CYNCNKSGHISRNCPDGTKT 525
           C++C++ GH ++NCP  T T
Sbjct: 6   CFHCHQPGHWAKNCPLKTTT 25



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 391 CYNCNKTGHIARNCP 435
           C++C++ GH A+NCP
Sbjct: 6   CFHCHQPGHWAKNCP 20



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 154 MSSSVCYKCNRTGHFAREC 210
           MSS  C+ C++ GH+A+ C
Sbjct: 1   MSSGDCFHCHQPGHWAKNC 19


>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
           XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 1012

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 244 FNRQREKCFKCNRTGHFARDCKEEADR 324
           F  +  KCF C + GH A DC+ +  R
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCEGKIKR 285


>At5g21140.1 68418.m02524 expressed protein
          Length = 312

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/68 (32%), Positives = 29/68 (42%)
 Frame = +1

Query: 358 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVC 537
           R   ++ D PSC  CN+ G  A  CP  G     +    C K     R+     K C  C
Sbjct: 187 RSWFRNNDVPSCEVCNEAGVKADLCPTEG--CPVRIHKYCLKKLLSQRD----DKRCSGC 240

Query: 538 GKPGHISR 561
           GKP  +S+
Sbjct: 241 GKPWPLSK 248


>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
           unknown protein (pir||T00468); contains Pfam PF00684 :
           DnaJ central domain (4 repeats)
          Length = 315

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = +1

Query: 307 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 486
           ++E  RC  C GTG++   CA+      C + +      R   +  + + T+ C NC+ +
Sbjct: 232 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 288

Query: 487 GHISRNCP 510
           G +   CP
Sbjct: 289 GKVM--CP 294


>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
           unknown protein (pir||T00468); contains Pfam PF00684 :
           DnaJ central domain (4 repeats)
          Length = 231

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = +1

Query: 307 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 486
           ++E  RC  C GTG++   CA+      C + +      R   +  + + T+ C NC+ +
Sbjct: 148 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 204

Query: 487 GHISRNCP 510
           G +   CP
Sbjct: 205 GKVM--CP 210


>At4g06479.1 68417.m00885 hypothetical protein
          Length = 370

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
 Frame = +1

Query: 325 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 432
           C  C+ T H   EC   P       D   CY C   GH++  C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340


>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 735

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
 Frame = +1

Query: 385 PSCYNCNKTGHIARNCPEGGRESAT-----------QTCYNCNKSGHISRNC 507
           P C++C   GHI   C    RE                CY+    GHI RNC
Sbjct: 626 PVCHHCGVVGHIRPRCFRLLREKNRLMNAYDVRFHGPKCYHYGVQGHIKRNC 677



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 23/76 (30%), Positives = 29/76 (38%)
 Frame = +1

Query: 139 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 318
           S+P  +   VC+ C   GH    C           F   REK    NR  + A D +   
Sbjct: 618 SEPRRVFRPVCHHCGVVGHIRPRC-----------FRLLREK----NRLMN-AYDVRFHG 661

Query: 319 DRCYRCNGTGHIAREC 366
            +CY     GHI R C
Sbjct: 662 PKCYHYGVQGHIKRNC 677


>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
           domain-containing protein similar to SP|P49373
           Transcription elongation factor S-II (TFIIS)
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF01096: Transcription factor S-II (TFIIS)
          Length = 378

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 502 CGRCGRTCCSYSRSASQTPAPPRDSSVRC 416
           CGRCG+  C+Y +  +++   P  + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368


>At2g31850.1 68415.m03889 expressed protein
          Length = 113

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
 Frame = -1

Query: 514 RRDSCGRCGRT---CCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGS 371
           R+D  G  G +   C S   S      P    S     SCC C++TA  GS
Sbjct: 61  RQDDAGLSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAGSCCCCSSTADSGS 111


>At2g07740.1 68415.m01002 zinc knuckle (CCHC-type) family protein
           similar to zinc finger protein GB:AAA75253; some members
           of this protein family have a weak CCHC zinc fingers
           that is mostly from retroviral gag proteins
           (nucleocapsid)
          Length = 409

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
 Frame = +1

Query: 289 HFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRESAT 459
           HFAR C +  +      GT  +  EC  +  E     C  C   GH+A  CP+       
Sbjct: 159 HFARVCVK-VNLKQPLKGTVVVNGECYYASYEGLNVICSLCGVFGHLAGACPKRSPGPVV 217

Query: 460 QTCYNCNKSGHISRNCPDGTKTCYVCGK 543
           Q   +  K   +S     G +    CGK
Sbjct: 218 QAGASPRKGNDVSSRGIGGEEIRKECGK 245


>At4g30200.3 68417.m04295 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 702

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +1

Query: 397 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 504
           NCN   H A    E G E   +       SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629


>At4g30200.2 68417.m04294 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 714

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +1

Query: 397 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 504
           NCN   H A    E G E   +       SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641


>At4g30200.1 68417.m04293 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 685

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +1

Query: 397 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 504
           NCN   H A    E G E   +       SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612


>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
           similar to zinc finger protein GB:BAA33206 [Oryza
           sativa]
          Length = 372

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = +1

Query: 391 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 552
           C +C+++ H A    +  R S T  C  CN      R   +    C  C   GH
Sbjct: 25  CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76


>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
           similar to zinc finger protein GB:BAA33206 [Oryza
           sativa]
          Length = 372

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = +1

Query: 391 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 552
           C +C+++ H A    +  R S T  C  CN      R   +    C  C   GH
Sbjct: 25  CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76


>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 275

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 97  LNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGV-VSRDS 240
           L +R    +SA       A ++S C KC + GH+  EC    V +SR S
Sbjct: 77  LGERKDKTMSASAVGSS-ASAASQCQKCFQAGHWTYECKNERVYISRPS 124


>At5g27220.1 68418.m03247 protein transport protein-related low
           similarity to SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 1181

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 402 QQDGP-HRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQDVLRVRQARPHLARV 566
           QQ+ P  + +L R  A VCD   L L  +R HL +  + H DVLR  +A    A++
Sbjct: 633 QQNNPDQQVDLVRD-ASVCDEKTLQLL-LRGHLKKCDQLHLDVLRALKASSDPAKL 686


>At4g06526.1 68417.m00938 hypothetical protein
          Length = 506

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
 Frame = +1

Query: 325 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 435
           C  C+ T H  +EC   P       D   C  C   GH++  CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325


>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
           SP|Q9S5A3 Chaperone protein dnaJ {Listeria
           monocytogenes}; contains Pfam profiles PF00226 DnaJ
           domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
           central domain (4 repeats)
          Length = 442

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +1

Query: 319 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATQTCYNCNKSG 489
           + C  C G+G      A+   +P+ C  C   G +  A   P G  +    TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQV-MTCSSCNGTG 274

Query: 490 HISRNC 507
            IS  C
Sbjct: 275 EISTPC 280


>At1g40080.1 68414.m04737 hypothetical protein member of
           hypothetical protein common family
          Length = 154

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
 Frame = +1

Query: 259 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSP--DEPSCYNCNKTGHIARNC 432
           +KC   N    +A+  ++     Y    TG+    C  +   D+P   + N       + 
Sbjct: 71  QKCLGANNP--YAKFVEKNKGLAYEST-TGYYQMRCRWNVTHDKPVFIDMNNEKRCIMHP 127

Query: 433 PEGGRESATQTCYNCNKSGHISRNC 507
           P        +TC+ C K GH  + C
Sbjct: 128 PFQPGRMVRRTCHRCKKVGHRCKKC 152


>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
           contains similarity to CONSTANS homologs
          Length = 373

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/54 (27%), Positives = 20/54 (37%)
 Frame = +1

Query: 391 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 552
           C +C++  H A    +  R S T  C  CN      R   +    C  C   GH
Sbjct: 25  CLSCDRNVHSANALSK--RHSRTLVCERCNAQPASVRCSDERVSLCQNCDWSGH 76


>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 516

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
 Frame = +1

Query: 334 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 435
           C    H   +C   P       D   CY+C   GH++  CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379


>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
            class), putative similar to zinc finger protein
            (GI:15811367) [Arabidopsis thaliana]; similar to
            TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
            to disease resistance protein RPP1-WsB (GI:3860165)
            [Arabidopsis thaliana]
          Length = 1996

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
 Frame = +1

Query: 241  GFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP-----SCYNCN 405
            GF R+R  C+ C                C+ C+    +    A +P +P     +CY   
Sbjct: 1549 GFTRKRHNCYNCGLV------------HCHACSSKKALKAALAPTPGKPHRVCDACYTKL 1596

Query: 406  KTGHIARNCPEGGRESATQT 465
            K G    N     R S T T
Sbjct: 1597 KAGESGYNSNVANRNSTTPT 1616


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,229,226
Number of Sequences: 28952
Number of extensions: 271702
Number of successful extensions: 1583
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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