Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a11
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13080.1 68414.m01516 cytochrome P450 family protein identica...    31   0.77 
At4g04545.1 68417.m00665 Ulp1 protease family protein contains P...    30   1.0  
At1g79680.1 68414.m09293 wall-associated kinase, putative simila...    29   3.1  
At1g69260.1 68414.m07939 expressed protein                             28   4.1  
At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containi...    28   5.4  
At3g50050.1 68416.m05472 aspartyl protease family protein contai...    28   5.4  
At5g64020.1 68418.m08038 expressed protein strong similarity to ...    27   9.4  
At4g37080.2 68417.m05252 expressed protein contains Pfam profile...    27   9.4  
At4g37080.1 68417.m05253 expressed protein contains Pfam profile...    27   9.4  
At4g19220.1 68417.m02835 pentatricopeptide (PPR) repeat-containi...    27   9.4  
At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.4  

>At1g13080.1 68414.m01516 cytochrome P450 family protein identical
           to gb|D78605 cytochrome P450 monooxygenase from
           Arabidopsis thaliana and is a member of the PF|00067
           Cytochrome P450 family. ESTs gb|Z18072, gb|Z35218 and
           gb|T43466 come from this gene
          Length = 502

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +2

Query: 275 LNSVTGAPRYC-HKIVMKSGTVVRTCLDVNPNDSQHTCRVVELASNTAIADSAKVKSCAV 451
           L+ + G P  C HK+ +K G +V   L   P        VV ++S+ A     K      
Sbjct: 44  LHHLAGLPHRCFHKLSIKYGPLVFLRLGSVP--------VVVISSSEAAEAVLKTNDLEC 95

Query: 452 CNKDNCNGAGSISFSLPLATFALIATYF 535
           C++    G+G +S+     TFA    Y+
Sbjct: 96  CSRPKTVGSGKLSYGFKDITFAPYGEYW 123


>At4g04545.1 68417.m00665 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 882

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = -3

Query: 412 GVGGELDNSAGVLGIV---GVDIQASTDNSSALHDDLVTVSRSSRNAVQDFDRQNVAQVE 242
           G+ G  D+ AGV GI+   GV     TD    +  D  +  R  + +  D D Q+   ++
Sbjct: 442 GLAGGSDSVAGVCGIIGGLGVLDGIKTDTLKEVRGDDASQKRRKKKSSSDMDAQSTRPLK 501

Query: 241 RIE 233
           R++
Sbjct: 502 RVK 504


>At1g79680.1 68414.m09293 wall-associated kinase, putative similar
           to wall-associated kinase 2 GI:4826399 from [Arabidopsis
           thaliana]
          Length = 769

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 398 LASNTAIADSAKVKSCAVCNKDNCNGAGSISFSLP 502
           L  N    DS   K+ ++ N  +CNG G    SLP
Sbjct: 168 LYCNARYGDSEYCKNISIMNDTSCNGIGCCKASLP 202


>At1g69260.1 68414.m07939 expressed protein
          Length = 345

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 505 QWEREGNRSSSVTVVLVAHSAGLDLRAVSDRGVGGELDNSAGVLGIVG-VDIQASTDNSS 329
           +W    N+S     +L  HSAGLD   VS   +GG    +AG    V  ++ +AS+D + 
Sbjct: 179 RWSATANKSG----LLRQHSAGLDSLQVSGESLGG--GRAAGSSSSVSELETKASSDEAR 232

Query: 328 AL 323
           +L
Sbjct: 233 SL 234


>At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 534

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +2

Query: 251 RNILPVEVLNSVTGAPRYCHKIVMKSGTVVRTCLDVNPNDSQHTCRVVELASNTAIADSA 430
           R+ L   V   +    R C K  +      +T L   P+   H CRV+E+A+ + + + A
Sbjct: 64  RSTLTSPVFLQILRETRKCPKTTLDFFDFAKTHLRFEPDLKSH-CRVIEVAAESGLLERA 122

Query: 431 KV 436
           ++
Sbjct: 123 EM 124


>At3g50050.1 68416.m05472 aspartyl protease family protein contains
           Pfam PF00026: Eukaryotic aspartyl protease
          Length = 632

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 128 CIKCYQCNSEQDKNCGDPFKSAKPPVECN 214
           C  C QC   QD        S   PV+CN
Sbjct: 121 CSDCEQCGKHQDPKFQPEMSSTYQPVKCN 149


>At5g64020.1 68418.m08038 expressed protein strong similarity to
           unknown protein (pir||T02538)
          Length = 408

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 478 WIYFLLSPTGHIRSDRYVFRFQTIISILYIFFTFSLT 588
           W Y L+   G +R D + +RF T  + +  +++ SL+
Sbjct: 160 WEYGLVKAKGALRPDGWAYRFPTTNTTILYYWSASLS 196


>At4g37080.2 68417.m05252 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 610

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 280 VQDFDRQNVAQVERIEVNRILGVAFYWGFGALERVPAVLILFTVTLVALDAI 125
           +QD D+      +   V+R L  AF    GAL R+P+ L   T+ L+A  A+
Sbjct: 60  LQDVDKLKRKLRQEENVHRALERAFTRPLGALPRLPSYLPRHTLELLAEVAV 111


>At4g37080.1 68417.m05253 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 597

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 280 VQDFDRQNVAQVERIEVNRILGVAFYWGFGALERVPAVLILFTVTLVALDAI 125
           +QD D+      +   V+R L  AF    GAL R+P+ L   T+ L+A  A+
Sbjct: 47  LQDVDKLKRKLRQEENVHRALERAFTRPLGALPRLPSYLPRHTLELLAEVAV 98


>At4g19220.1 68417.m02835 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 932

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 8/121 (6%)
 Frame = +2

Query: 119 TGYCIKCYQCNSEQDKNCGDPFKSAKPPVECNTQDSI--------NFNTLYLRNILPVEV 274
           +GYC   Y    +  ++      S   P+  N  D +          + ++LR++L   +
Sbjct: 39  SGYCSNYYFSKRKHKRHFTSSVLSPVTPIVHNLFDELPERENRTMESSFMFLRDVLRSFM 98

Query: 275 LNSVTGAPRYCHKIVMKSGTVVRTCLDVNPNDSQHTCRVVELASNTAIADSAKVKSCAVC 454
           + + T  PR  H   +K G +    L  +        R  EL S++ + D  K K   V 
Sbjct: 99  MRTETETPRSVHCFALKCGLL--QDLATSSKLLTFYGRTGELVSSSCLFDELKEKDVIVW 156

Query: 455 N 457
           N
Sbjct: 157 N 157


>At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 496

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 538 NEIRSDQSECGQWEREGNRSSSVTVVLVAHSAGLDLRAVSDRGVGGE 398
           N+   DQ EC QW  +     SV  V +     L L  + + G+G E
Sbjct: 269 NQAAIDQDECLQW-LDSKEDGSVLYVCLGSICNLPLSQLKELGLGLE 314


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,456,723
Number of Sequences: 28952
Number of extensions: 248921
Number of successful extensions: 708
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)