Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a07
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02940.1 68414.m00261 glutathione S-transferase, putative sim...    32   0.22 
At3g09780.1 68416.m01161 protein kinase family protein contains ...    29   2.0  
At1g16090.1 68414.m01930 wall-associated kinase-related contains...    29   2.0  
At1g09450.1 68414.m01057 haspin-related similar to haspin (GI:92...    28   3.6  
At5g46050.1 68418.m05663 proton-dependent oligopeptide transport...    27   8.3  
At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD) iden...    27   8.3  
At1g24300.1 68414.m03066 GYF domain-containing protein contains ...    27   8.3  

>At1g02940.1 68414.m00261 glutathione S-transferase, putative
           similar to glutathione S-transferase GI:860955 from
           [Hyoscyamus muticus]
          Length = 256

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 68  CFMHHASSSFGCPSTCHRWCRRLGRLEQWR--SQPLDTSMDRIRSLVPAVG 214
           C+ HH + +F     C +WC+ L R ++++    P  T+  R+ +++   G
Sbjct: 12  CY-HHCNQTFESSRQCFKWCQELARKDEYKIYGYPYSTNTRRVLAVLHEKG 61


>At3g09780.1 68416.m01161 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 775

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 267 CTKVGGIQRACLDPTLPYCNLGECSATPAEGCEPASGASV 386
           C  V G      DP L  C+ G C A P    E A  AS+
Sbjct: 324 CWMVNGSSTLAYDPPLELCSPGMCRAGPCNEKEFAFNASI 363


>At1g16090.1 68414.m01930 wall-associated kinase-related contains
           similarity to wall-associated kinase 2 GI:4826399 from
           [Arabidopsis thaliana]; similar to wall-associated
           kinase 1 (GI:3549626) [Arabidopsis thaliana]; contains
           one transmembrane domain
          Length = 317

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 247 IALPSKFVQK*EVY-RGRVWTRLFLTATSENAPLPPLKDVNRPLVHL 384
           IA+P  F    + Y     W  +    TS N PLP LK +NR LV++
Sbjct: 43  IAIPYPFGIGKDCYLNNNEWYEVICNRTSGN-PLPVLKSINRELVNI 88


>At1g09450.1 68414.m01057 haspin-related similar to haspin
           (GI:9229937) {Mus musculus} and haploid germ
           cell-specific nuclear protein kinase (GI:13561418) {Mus
           musculus}
          Length = 599

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 258 KQVCTKVGGIQRACLDPTLPYCNLGE 335
           KQVC K  G+Q + +D TL   N GE
Sbjct: 471 KQVCIKTFGVQISIIDFTLSRINTGE 496


>At5g46050.1 68418.m05663 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 582

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 282 GIQRACLDPTLPYCNLGECSATPAEGCEPASGASVA 389
           G+    L  T+P     ECS T  E CE AS   +A
Sbjct: 112 GMMVLTLSVTIPGIKPPECSTTNVENCEKASVLQLA 147


>At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD)
           identical to isovaleryl-CoA-dehydrogenase precursor
           [Arabidopsis thaliana] GI:5596622
          Length = 409

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 282 GIQRACLDPTLPYCNLGECSATPAEGCEPASGASVAPTA*YSILKHTRKYI 434
           GI +ACLD  LPY    E    P    +   G  VA    Y+ L+ +R Y+
Sbjct: 280 GIMQACLDNVLPYIRQREQFGRPVGEFQFIQG-KVADM--YTALQSSRSYV 327


>At1g24300.1 68414.m03066 GYF domain-containing protein contains
           Pfam profile: PF02213 GYF domain
          Length = 1417

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 242 ASTTDGGARSPLRVPGSGCDP-WRYPRVDCAIVPASPT 132
           AST   G+ + L   GS   P +RYPRV C I  +  T
Sbjct: 249 ASTIGRGSSTSLIGAGSASAPVFRYPRVKCRIPESGET 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,979,289
Number of Sequences: 28952
Number of extensions: 219746
Number of successful extensions: 548
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)