Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a03
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl...    32   0.43 
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl...    32   0.43 
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative...    30   1.3  
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative...    30   1.3  
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative...    30   1.3  
At4g16080.1 68417.m02438 hypothetical protein contains Pfam prof...    29   4.0  
At5g25170.1 68418.m02984 expressed protein                             28   5.3  
At2g01050.1 68415.m00010 hypothetical protein                          28   5.3  
At4g11530.1 68417.m01850 protein kinase family protein contains ...    28   7.1  
At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like...    28   7.1  
At4g33600.1 68417.m04773 expressed protein                             27   9.3  

>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -3

Query: 469 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 365
           +TLG+   ++ +  +LD+W  V+ +C+  D+ + V
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -3

Query: 469 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 365
           +TLG+   ++ +  +LD+W  V+ +C+  D+ + V
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At4g16080.1 68417.m02438 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 379

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 588 PLYCSLQFSLLVTMSSSLWRLPSDTL 511
           P Y  L FS+LVT  +SLW L  D +
Sbjct: 212 PQYHELNFSILVTGHTSLWSLLQDNV 237


>At5g25170.1 68418.m02984 expressed protein
          Length = 218

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 613 QILRRFGPGWWPRLRQY*LGCPCLLP 690
           Q+ RR  P W  RL ++ L C C+LP
Sbjct: 127 QLTRRSIPSWVNRLARFGLFCNCVLP 152


>At2g01050.1 68415.m00010 hypothetical protein
          Length = 515

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
 Frame = -3

Query: 595 IMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTL-----GYYDTLLDNS 431
           +MT++  P  FF+    FEL E    Y AAL G  P   +    L       +D L D+ 
Sbjct: 108 VMTVMDLPRQFFM--IRFELEE---EYMAALTGG-PWRVLGNYLLVQDWSSRFDPLRDDI 161

Query: 430 TLLDVWAEVDGMCYSYDAHILVVILLREFG 341
               VW  +  + Y+Y    L++ + R  G
Sbjct: 162 VTTPVWVRLSNIPYNYYHRCLLMEIARGLG 191


>At4g11530.1 68417.m01850 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 931

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +2

Query: 161 ILNQWFQQCAGIVLTNYHYLSTATCFHGEF-----YDPAYRRIIA 280
           +LN  F       L  + Y+ST TCF+G F     YD   RRI++
Sbjct: 2   MLNTLFLPIFLFFLITFDYVSTQTCFNGYFKPNGTYDLNRRRILS 46


>At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like
           protein kinase GB:CAB16796 GI:4006878 from [Arabidopsis
           thaliana]
          Length = 359

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
 Frame = -3

Query: 553 HNEF-ELVEVAVRYTAAL----NGSSPSEQINKNTLGYYDTLLDNSTLLDVWA--EVDGM 395
           HN F  L EV+   +A L       S + Q+N    G+   + D     D+W     DG 
Sbjct: 84  HNSFARLGEVSRTGSAILAPTNQQDSITSQLNNGVRGFMLDMYDFQN--DIWLCHSFDGT 141

Query: 394 CYSYDAHILVVILLREF 344
           C+++ A    + +LREF
Sbjct: 142 CFNFTAFQPAINILREF 158


>At4g33600.1 68417.m04773 expressed protein 
          Length = 453

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 163 LESMVPTVRWYCSHQLPLPFNCYLFPWRILR 255
           L +MVP V W   HQ   P    L+ W  LR
Sbjct: 183 LSAMVPFVAWSLRHQCENPQRWVLYHWGELR 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,945,635
Number of Sequences: 28952
Number of extensions: 382050
Number of successful extensions: 1001
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)