Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0041
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01540.1 68417.m00200 no apical meristem (NAM) family protein...    31   0.54 
At5g12080.2 68418.m01415 mechanosensitive ion channel domain-con...    31   0.95 
At5g12080.1 68418.m01414 mechanosensitive ion channel domain-con...    31   0.95 
At1g23935.1 68414.m03020 apoptosis inhibitory protein 5 (API5)-r...    27   8.8  

>At4g01540.1 68417.m00200 no apical meristem (NAM) family protein
           similar to  NAC1 (GI:7716952) {Medicago truncatula};
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 423

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 543 QGPHCGPLRRPVTKWLHHSTHGTLEYSLCDKKNHGVISFN 424
           QGPH  P      + L H   GT+EY   +++N   +S N
Sbjct: 215 QGPHLAPNDDEFIRGLRHVDRGTVEYLFANEENMDGLSMN 254


>At5g12080.2 68418.m01415 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 734

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 345 VLSSNNACRV*NCSSFVLISEQQGLIYWLYKVHLIKLI---YYDRNLFDRI 202
           V  S  A +V  C +  LIS   G  +WL K  L+K++   +   N FDRI
Sbjct: 271 VKRSPAATKVLKCITRTLISILTGAFFWLVKTLLLKILAANFNVNNFFDRI 321


>At5g12080.1 68418.m01414 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 734

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 345 VLSSNNACRV*NCSSFVLISEQQGLIYWLYKVHLIKLI---YYDRNLFDRI 202
           V  S  A +V  C +  LIS   G  +WL K  L+K++   +   N FDRI
Sbjct: 271 VKRSPAATKVLKCITRTLISILTGAFFWLVKTLLLKILAANFNVNNFFDRI 321


>At1g23935.1 68414.m03020 apoptosis inhibitory protein 5
           (API5)-related contains weak hit to Pfam profile
           PF05918: Apoptosis inhibitory protein 5 (API5)
          Length = 660

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 498 LHHSTHGTLEYSLCDKKNHGV 436
           +HH   GT+E +LC  ++HG+
Sbjct: 418 VHHCYGGTIEKALCHVQSHGI 438


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,181,039
Number of Sequences: 28952
Number of extensions: 251490
Number of successful extensions: 468
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)