Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0030
(502 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30950.1 68417.m04394 omega-6 fatty acid desaturase, chloropl... 35 0.035
At1g79430.2 68414.m09257 myb family transcription factor-related 31 0.58
At1g79430.1 68414.m09256 myb family transcription factor-related 31 0.58
At1g13820.1 68414.m01622 hydrolase, alpha/beta fold family prote... 28 3.1
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 28 4.1
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 28 4.1
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil... 27 9.4
At3g53680.1 68416.m05928 PHD finger transcription factor, putati... 27 9.4
At2g37520.1 68415.m04601 PHD finger family protein contains Pfam... 27 9.4
>At4g30950.1 68417.m04394 omega-6 fatty acid desaturase, chloroplast
(FAD6) (FADC) identical to GI:493068
Length = 448
Score = 34.7 bits (76), Expect = 0.035
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 5 KATQTTMIKLEVLCSFAAVPFAKPSVIAPVGLAGWAGHLSAPW-GSH 142
+A++ +K+ + C FA + P ++ VG+ GW PW G H
Sbjct: 268 RASEVNRVKISLACVFAFMAVGWPLIVYKVGILGWVKFWLMPWLGYH 314
>At1g79430.2 68414.m09257 myb family transcription factor-related
Length = 358
Score = 30.7 bits (66), Expect = 0.58
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 200 PLSLPPWQPANILA-ADGRPLDTLSVNHDRAV-HFTGKALEHGGVHLLKKR 346
PLS PP+Q NI + LD + +H HFTG ++L KKR
Sbjct: 207 PLSFPPFQDLNIYGNTTDQVLDHHNFHHQNIENHFTGNNAADTNIYLGKKR 257
>At1g79430.1 68414.m09256 myb family transcription factor-related
Length = 293
Score = 30.7 bits (66), Expect = 0.58
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 200 PLSLPPWQPANILA-ADGRPLDTLSVNHDRAV-HFTGKALEHGGVHLLKKR 346
PLS PP+Q NI + LD + +H HFTG ++L KKR
Sbjct: 142 PLSFPPFQDLNIYGNTTDQVLDHHNFHHQNIENHFTGNNAADTNIYLGKKR 192
>At1g13820.1 68414.m01622 hydrolase, alpha/beta fold family protein
contains Pfam profile PF00561: hydrolase, alpha/beta
fold family
Length = 339
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 65 FAKPSVIAPVGLAGWAGHLSAPWGSHIATPLVAAAPVLGA 184
F+ + P +A H W SHI P+V P LGA
Sbjct: 122 FSDLDKLPPCDVASKREHFYKFWKSHIKRPVVLVGPSLGA 161
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 95 GLAGWAGHLSAPWGSHIATPLVAAAPVLGAHNYRGPLSLPPWQPANI 235
GLAG + SAPW P V + G H+ +G L P P N+
Sbjct: 153 GLAGVSAAQSAPWPPFGMIPGVPNGGLDGFHHLQGSLRPPLNAPLNM 199
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 95 GLAGWAGHLSAPWGSHIATPLVAAAPVLGAHNYRGPLSLPPWQPANI 235
GLAG + SAPW P V + G H+ +G L P P N+
Sbjct: 153 GLAGVSAAQSAPWPPFGMIPGVPNGGLDGFHHLQGSLRPPLNAPLNM 199
>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
{Homo sapiens}; contains Pfam profile PF02127:
Aminopeptidase I zinc metalloprotease (M18)
Length = 526
Score = 26.6 bits (56), Expect = 9.4
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -3
Query: 482 RVPNLNDQQDRPAQVEQ*VHGRPNVRQ--ASRLGLRETTPLQEPEQQNVSSKDAHH 321
RVP L DR + +PN+ L + E + +NVSSKDAHH
Sbjct: 211 RVPTLAIHLDRTVNSDG---FKPNLETQLVPLLATKSDESSAESKDKNVSSKDAHH 263
>At3g53680.1 68416.m05928 PHD finger transcription factor, putative
predicted proteins, Arabidopsis thaliana
Length = 839
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 256 AGYSQCKPRSCCSFYGKSSGTWWCAS 333
AG Q +C F GTW+C+S
Sbjct: 502 AGCPQAFHTACLKFQSMPEGTWYCSS 527
>At2g37520.1 68415.m04601 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 854
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 256 AGYSQCKPRSCCSFYGKSSGTWWCAS 333
AG Q +C F GTW+C+S
Sbjct: 509 AGCPQAFHTACLKFQSMPEGTWYCSS 534
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,455,686
Number of Sequences: 28952
Number of extensions: 268693
Number of successful extensions: 807
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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