Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0022
(448 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19180.1 68416.m02435 cell division protein-related weak simi... 29 1.1
At5g52610.1 68418.m06532 F-box family protein contains F-box dom... 28 2.5
At5g64740.1 68418.m08141 cellulose synthase, catalytic subunit, ... 28 3.3
At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit (... 28 3.3
At4g22730.1 68417.m03279 leucine-rich repeat transmembrane prote... 28 3.3
At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SD... 27 4.4
At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SD... 27 4.4
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ... 27 4.4
At1g54710.1 68414.m06237 expressed protein contains 3 WD-40 repe... 27 4.4
At5g09870.1 68418.m01141 cellulose synthase, catalytic subunit, ... 27 5.8
At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit (... 27 7.6
>At3g19180.1 68416.m02435 cell division protein-related weak
similarity to cell division protein Ftn2 [Synechococcus
sp. PCC 7942] GI:16226084
Length = 819
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +2
Query: 125 LSSACLLFVLSTRSTSRCVQSPWLQVS 205
L S+CLL +S RSTS V P LQ+S
Sbjct: 10 LPSSCLLCGISNRSTSFVVDRPELQIS 36
>At5g52610.1 68418.m06532 F-box family protein contains F-box domain
Pfam:PF00646
Length = 351
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 431 YLNMVWVSCQGENPADRENIGPIQYLPHRGFPGYYFPY 318
Y++ +W+S NPA R+ + Q PH+ F +Y Y
Sbjct: 102 YMSQLWIS----NPATRKGVLVPQSAPHQKFRKWYMGY 135
>At5g64740.1 68418.m08141 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit (Ath-A), Arabidopsis thaliana
Length = 1084
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = -3
Query: 419 VWVSCQGENPADRENIGPIQYLPHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINI 240
V++ G + + + Y+ PG F + + G ++ L+ V L+N+
Sbjct: 504 VFLGSDGVRDVENNELPRLVYVSREKRPG--FDHHKKAGAMNSLIRVSGVLSNAPYLLNV 561
Query: 239 ECRAWANNIKYERLEAM 189
+C + NN K R EAM
Sbjct: 562 DCDHYINNSKALR-EAM 577
>At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit
(Ath-A) identical to gi:2827141
Length = 1084
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/70 (22%), Positives = 30/70 (42%)
Frame = -3
Query: 419 VWVSCQGENPADRENIGPIQYLPHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINI 240
V++ G D + + Y+ PG F + + G ++ L+ V L+N+
Sbjct: 505 VFLGHSGVRDTDGNELPRLVYVSREKRPG--FDHHKKAGAMNSLIRVSAVLSNAPYLLNV 562
Query: 239 ECRAWANNIK 210
+C + NN K
Sbjct: 563 DCDHYINNSK 572
>At4g22730.1 68417.m03279 leucine-rich repeat transmembrane protein
kinase, putative leucine rich repeat receptor-like
kinase, Oryza sativa, PATCHX:E267533
Length = 688
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 106 YTSIYFFIFCVSAVCTLYSINISMCTEPMASSLSYLMLFAQARHSMLINMPVLGLCKCTA 285
+TS++ + + + SINIS C ++ L L + H L+ + G C C+
Sbjct: 426 FTSVFKGVLRDGSPVAIRSINISSCKNEEVEFMNGLKLLSSLSHENLVKL--RGFC-CSR 482
Query: 286 TRG 294
RG
Sbjct: 483 GRG 485
>At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 279
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 178 CTEPMASSLSYLMLFAQARHSMLINMPVLGLCKCTATRGLRYPSWL 315
C++ ++S +M H + +N GL K T+GL WL
Sbjct: 177 CSKGGVDTMSRMMALELGVHKIRVNSIAPGLFKSEITQGLMQKEWL 222
>At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 280
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 178 CTEPMASSLSYLMLFAQARHSMLINMPVLGLCKCTATRGLRYPSWL 315
C++ ++S +M H + +N GL K T+GL WL
Sbjct: 178 CSKGGVDTMSRMMALELGVHKIRVNSIAPGLFKSEITQGLMQKEWL 223
>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit, Arabidopsis thaliana (Ath-A)
Length = 1088
Score = 27.5 bits (58), Expect = 4.4
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = -3
Query: 419 VWVSCQGENPADRENIGPIQYLPHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINI 240
V++ G D + + Y+ PG F + + G ++ L+ V L+N+
Sbjct: 510 VFLGHSGVCDMDGNELPRLVYVSREKRPG--FDHHKKAGAMNSLIRVSAVLSNAPYLLNV 567
Query: 239 ECRAWANNIKYERLEAM 189
+C + NN K R EAM
Sbjct: 568 DCDHYINNSKAIR-EAM 583
>At1g54710.1 68414.m06237 expressed protein contains 3 WD-40 repeats
(PF00400) (1 weak) submitForm();
Length = 927
Score = 27.5 bits (58), Expect = 4.4
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 29 NYVLLFNLTQ-ITSK*IQ*ILFSNYSYIRLYTSLSSACLLFVLS 157
++V L+ L + +TS IQ I FS+YS S S C ++VLS
Sbjct: 430 SHVPLYKLHRGMTSAVIQDICFSSYSQWIAIVSSKSTCHIYVLS 473
>At5g09870.1 68418.m01141 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit (Ath-A), Arabidopsis thaliana
Length = 1069
Score = 27.1 bits (57), Expect = 5.8
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = -3
Query: 419 VWVSCQGENPADRENIGPIQYLPHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINI 240
V++ G + + + Y+ PG F + + G ++ L+ V L+N+
Sbjct: 492 VFLGNNGVRDVENNELPRLVYVSREKRPG--FDHHKKAGAMNSLIRVSGVLSNAPYLLNV 549
Query: 239 ECRAWANNIKYERLEAM 189
+C + NN K R EAM
Sbjct: 550 DCDHYINNSKALR-EAM 565
>At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit
(IRX1) nearly identical to gi:12836997
Length = 985
Score = 26.6 bits (56), Expect = 7.6
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = -3
Query: 419 VWVSCQGENPADRENIGPIQYLPHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINI 240
V++ G + + + Y+ PGY + + G + LV V ++N+
Sbjct: 412 VFLGYSGARDIEGNELPRLVYVSREKRPGYQ--HHKKAGAENALVRVSAVLTNAPFILNL 469
Query: 239 ECRAWANNIKYERLEAM 189
+C + NN K R EAM
Sbjct: 470 DCDHYVNNSKAVR-EAM 485
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,064,810
Number of Sequences: 28952
Number of extensions: 187084
Number of successful extensions: 517
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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