Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0017
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containi...    30   1.1  
At5g11100.1 68418.m01296 C2 domain-containing protein similar to...    29   3.4  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    28   4.5  
At3g12775.1 68416.m01595 ubiquitin-conjugating enzyme family pro...    28   6.0  
At2g33550.1 68415.m04112 gt-2-related weak similarity to gt-2 (G...    27   7.9  
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m...    27   7.9  

>At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 492

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 265 DKQKQMAKQLAQGIKKTHPELWDEFITFYDPQGKYQTSFK 146
           +K + M + LA+  K T PE W+   T Y  +G  + +FK
Sbjct: 354 EKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAFK 393


>At5g11100.1 68418.m01296 C2 domain-containing protein similar to
           Ca2+-dependent lipid-binding protein (CLB1) GI:2789434
           from [Lycopersicon esculentum]
          Length = 574

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -1

Query: 442 QDKYEPIDDSFDASEVLSNERLLKSYTKCLLNQGPCTAELKKIKDKIPEA 293
           QD  + +   F  S V+ ++R   SY+KCLLN      EL+KI   + EA
Sbjct: 48  QDSRKLLPGDFYPSWVVFSQRQKLSYSKCLLNW--LNLELEKIWPYVNEA 95


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 430  EPIDDSFDASEVLSNERLLKSYTKCLLNQGPCT 332
            EP+D     + V+S+  L+ SY +CL +QG  T
Sbjct: 2496 EPLDTPTMNNVVMSSVELIYSYAECLASQGKDT 2528


>At3g12775.1 68416.m01595 ubiquitin-conjugating enzyme family
           protein contains Pfam profile PF00179:
           Ubiquitin-conjugating enzyme
          Length = 362

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -1

Query: 373 KSYTKCLLNQGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGIKKTHPELWDE 194
           K Y + +LN     AEL+K+K+K    L  +    +        Q   GIKKT    W++
Sbjct: 298 KVYCEQILNSD-LKAELEKLKEK-EYTLSDYYYGSSSSNYPTYTQRDDGIKKTSKSFWNK 355

Query: 193 FIT 185
           +++
Sbjct: 356 YLS 358


>At2g33550.1 68415.m04112 gt-2-related weak similarity to gt-2
           (GI:20249) [Oryza sativa]
          Length = 314

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -1

Query: 418 DSFDASEVLSNERLLKSYTKCL--LNQGPCTAELKKIKDKIPEALETHCAKCTDKQKQMA 245
           D  ++ E L++  + KS T  +    Q  C A+  ++K+K PEA        T ++++  
Sbjct: 178 DRRESPEKLNSTPVAKSVTDVIDKEKQEACVADQGRVKEKQPEAANVE-GGSTSQEERKR 236

Query: 244 KQLAQGIKKTHPE 206
           K+ + G K+   E
Sbjct: 237 KRTSFGEKEEEEE 249


>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
           myosin heavy chain (GI:1850913) [Entamoeba histolytica];
           similar to Intracellular protein transport protein USO1
           (Swiss-Prot:P25386) [Saccharomyces cerevisiae]
          Length = 555

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = -1

Query: 391 SNERLLKSYTKCLLNQGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGIKKTH 212
           S E+ +   TK LL    C  E+KK KD++ +  E    K   + ++  K+  + +K+T 
Sbjct: 450 SYEKTVVEATKMLLTAKKCVVEMKKEKDEMAKEKEEVEKKLEGQVREEEKE-KEKLKETL 508

Query: 211 PELWDE 194
             L +E
Sbjct: 509 LGLGEE 514


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,370,044
Number of Sequences: 28952
Number of extensions: 235062
Number of successful extensions: 631
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)