Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0011
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37580.1 68418.m04527 tropomyosin-related low similarity to t...    32   0.29 
At3g12550.1 68416.m01562 XH/XS domain-containing protein / XS zi...    30   1.2  
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ...    29   2.1  
At3g17740.1 68416.m02264 expressed protein                             29   2.1  
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol...    29   3.6  
At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138...    28   4.8  
At2g33050.1 68415.m04053 leucine-rich repeat family protein cont...    28   6.3  
At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger) fa...    27   8.4  
At1g51980.1 68414.m05863 mitochondrial processing peptidase alph...    27   8.4  

>At5g37580.1 68418.m04527 tropomyosin-related low similarity to
           tropomyosin gene 1, isoform 9D, D.melanogaster,
           EMBL:DMTRO13 (GI:158696)
          Length = 239

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = +1

Query: 103 DKCRKIEGRMASDQ-DLKLADTLRYYMRDAHAAKAVLVRRLRCLAAYEAANRNLEKARAK 279
           D   K++ + +  Q D K +  LR Y    HAA  +L++ L  LAA E +   + + + +
Sbjct: 101 DVLHKLKNQKSKAQKDEKSSAALRNY---EHAALVILLQSLESLAALEMSKNEIHEPKEE 157

Query: 280 NKDVHAAEQGQAEACAKFEQ 339
           N  +HAAE    +    +++
Sbjct: 158 N--LHAAEDSLLQCVTAYKE 175


>At3g12550.1 68416.m01562 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 635

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
 Frame = +1

Query: 199 KAVLVRRLRCLAAYEAANRNLEKARAKNKDVHAAEQGQAEACAKFEQLSARAREEL-IDF 375
           K + +R+L  LA  EA N    K  AK  + +AA     +  A  +Q +    + L +D 
Sbjct: 337 KELEIRKLE-LAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDH 395

Query: 376 RTR---RVAAFRKSLIELAELEIKHARSQQEL 462
           + +   R+AA  + L +  ELE++  + + +L
Sbjct: 396 KEKLHKRIAALERQLDQKQELELEVQQLKSQL 427


>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
            SP|Q07283 Trichohyalin {Homo sapiens}
          Length = 1400

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
 Frame = +1

Query: 52   REQPPMERFLTKASETFDKCRKIEGRMASDQDLKLA---DTLRYYMRDAHAAKAVLVRRL 222
            RE+   ER   +A E  ++ RK++ +   +  LK A   +     MR+A A +    RR+
Sbjct: 681  REKAENERRAVEAREKAEQERKMKEQQELELQLKEAFEKEEENRRMREAFALEQEKERRI 740

Query: 223  RCLAAYEAANRNLEKARAKNKDVHAAEQGQAEACAKFEQLSARAREELIDFRTRRVAAFR 402
            +     E   R +++AR K  ++    +   E   K  Q+  R   E  + R + V    
Sbjct: 741  KEAREKEENERRIKEAREK-AELEQRLKATLEQEEKERQIKERQEREENERRAKEVLEQA 799

Query: 403  KSLIELAELEIKHARSQQELFRK 471
            ++     E ++K A  Q+E  R+
Sbjct: 800  EN-----ERKLKEALEQKENERR 817


>At3g17740.1 68416.m02264 expressed protein
          Length = 1149

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/76 (23%), Positives = 37/76 (48%)
 Frame = +1

Query: 157 ADTLRYYMRDAHAAKAVLVRRLRCLAAYEAANRNLEKARAKNKDVHAAEQGQAEACAKFE 336
           +DT  +Y + A   +    +R+R  AA EA + + +      +DV   E  + +  +K  
Sbjct: 205 SDTRYWYAKHAAMERNKNFKRIRLSAASEAVDSSFDNFIPLEEDVTVPESDEEDVLSKDS 264

Query: 337 QLSARAREELIDFRTR 384
            + A   +E+++ +TR
Sbjct: 265 MIGASWEDEVLN-KTR 279


>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
           sorting protein-related similar to SP|P46467 SKD1
           protein (Vacuolar sorting protein 4b) {Mus musculus};
           contains Pfam profiles PF00004: ATPase AAA family,
           PF04212: MIT domain
          Length = 435

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 506 NAAWNDNIGNSNSKQAIITLISLPVKF 586
           N  W+D  G  ++KQA+   + LPVKF
Sbjct: 128 NIKWSDVAGLESAKQALQEAVILPVKF 154


>At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as 'axi
           1 protein from Nicotiana tabacum -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 567

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 211 VRRLRCLAAYEAANRNLEKARAKNKDVHAAEQGQAEACAKFEQLSARAREELIDF 375
           V+RLRCLA YEA   +          V   ++  A   AK+  +  R  E+++ F
Sbjct: 287 VQRLRCLANYEALKFSKTILTLGETLVKRMKEQSANHGAKYVSVHLRFEEDMVAF 341


>At2g33050.1 68415.m04053 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 800

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 264 LQVPVGCFVGS*TPESP--HEHRFRCVSVSH 178
           LQ+P GCF G+  P S     H+ R +++SH
Sbjct: 69  LQLPSGCFTGTLKPNSSLFELHQLRYLNLSH 99


>At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 zinc finger
           protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 375

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 96  LGGLREEPLHGRLLSGRELS 37
           +G  R+ P HGRLL+G+E S
Sbjct: 222 IGSDRDSPRHGRLLTGQERS 241


>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 503

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 535 ISDIVVPSRIQFTDTP*ALEVIS*TTP 455
           ++D V PS++Q T  P  L++ S TTP
Sbjct: 69  LADKVEPSKLQITTLPNGLKIASETTP 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,360,300
Number of Sequences: 28952
Number of extensions: 258131
Number of successful extensions: 765
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)