Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0010
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g10620.1 68414.m01204 protein kinase family protein contains ... 33 0.24
At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie... 31 0.97
At1g56020.1 68414.m06431 expressed protein 31 0.97
At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein ... 29 2.2
At4g02720.1 68417.m00368 expressed protein temporary automated f... 29 3.0
At5g11770.1 68418.m01374 NADH-ubiquinone oxidoreductase 20 kDa s... 28 5.2
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 28 5.2
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 28 5.2
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 28 6.8
At3g11760.1 68416.m01443 expressed protein 28 6.8
At2g37440.2 68415.m04593 endonuclease/exonuclease/phosphatase fa... 27 9.0
At2g37440.1 68415.m04592 endonuclease/exonuclease/phosphatase fa... 27 9.0
>At1g10620.1 68414.m01204 protein kinase family protein contains
serine/threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 718
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/38 (47%), Positives = 20/38 (52%)
Frame = +2
Query: 281 STPDPAPA*QSSQHDTLPVVGPLVSPHGQVPPPRLFLP 394
S P P P QS+ PVV P P Q+PPP LF P
Sbjct: 95 SPPQPQPPPQSTPTGDSPVVIPFPKP--QLPPPSLFPP 130
>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
PIR:S53363
Length = 438
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 7 PRLNPALVAAQASGTAPTGSSVQKRPRSANSFKKKRRHPPRL 132
PR P + A +S T SSV RP + + R PPRL
Sbjct: 200 PRAKPQIAANASSRTNVRSSSVTSRPDRSTTVSATPRTPPRL 241
>At1g56020.1 68414.m06431 expressed protein
Length = 398
Score = 30.7 bits (66), Expect = 0.97
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 7 PRLNPALVAAQASGTAP--TGSSVQKRPRSANSFKKKRRHPPRLNNVDRSSAQTREVTVS 180
PRL+ L A+ AP T S +PR + K +R HPP +VD SS+ + +
Sbjct: 223 PRLSLDLDKPSANPFAPSRTHSRNLNQPRIRLA-KPRRNHPPSTPSVDGSSSSSACIESR 281
Query: 181 GVTV 192
G+TV
Sbjct: 282 GLTV 285
>At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 718
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 7 PRLNPALVAAQASGTAPTGSSVQKRPRSANSFKKKRRHPPRLNNVDRSSAQTR 165
PR+ P+ V A+ TA G+ + KRP +++K + + N R++A+ R
Sbjct: 375 PRMVPSTVDPDAAETAERGNKIPKRPVKISAWKLAKLNS---NEATRAAARAR 424
>At4g02720.1 68417.m00368 expressed protein temporary automated
functional assignment
Length = 422
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 64 SSVQKRPRSANSFKKKRRH--PPRLNNVDRSSAQTREVTVS 180
SS +K+ RS+ SF+KKR H + ++ D SS + + +S
Sbjct: 156 SSKRKKSRSSRSFRKKRSHRRKTKYSDSDESSDEDSKAEIS 196
>At5g11770.1 68418.m01374 NADH-ubiquinone oxidoreductase 20 kDa
subunit, mitochondrial identical to NADH-ubiquinone
oxidoreductase 20 kDa subunit mitochondrial [precursor]
SP:Q42577 from [Arabidopsis thaliana]; contains Pfam
profile: PF01058 NADH ubiquinone oxidoreductase, 20 Kd
subunit
Length = 218
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +2
Query: 233 ARVTLNLQTTRDLDLQSTPDPAPA*QSSQHDTLPVVGPLVSPHGQVPP 376
A +T N T L LQS A A S H +LP + P SP P
Sbjct: 2 AMITRNTATRLPLLLQSQRAVAAASVSHLHTSLPALSPSTSPTSYTRP 49
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +2
Query: 287 PDPAPA*QSSQHDTL----PVVGPLVSPHGQVPPP 379
P P+ A QHD+ PV G ++ P+G+ PPP
Sbjct: 329 PIPSSAQSIPQHDSSMAIPPVSGHIMPPYGRFPPP 363
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +2
Query: 287 PDPAPA*QSSQHDTL----PVVGPLVSPHGQVPPP 379
P P+ A QHD+ PV G ++ P+G+ PPP
Sbjct: 316 PIPSSAQSIPQHDSSMAIPPVSGHIMPPYGRFPPP 350
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9 (SP:Q9NSI6)
{Homo sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (4 copies)
Length = 1677
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 13 LNPALV-AAQASGTAPTGSSVQKRPRSANSFKKKRRHPPRLNNVDRSSAQTREVT 174
LNP + A + P S KR +K R+H NN+DR +A T+EV+
Sbjct: 1226 LNPQICDALSIANDVPVSHSHPKRMFDFVYRRKSRKHK---NNLDRDAALTKEVS 1277
>At3g11760.1 68416.m01443 expressed protein
Length = 702
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -1
Query: 290 RVCSGDQGR-ASFEDSTSLELLETDF 216
+ C ++GR +SFE S SL+ ETDF
Sbjct: 236 KACREEEGRFSSFESSESLDDFETDF 261
>At2g37440.2 68415.m04593 endonuclease/exonuclease/phosphatase
family protein similar to inositol polyphosphate
5-phosphatase I (GI:10444261) and II (GI:10444263)
[Arabidopsis thaliana]; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 398
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 126 ETQQRGPQLGPNQRGNSEWRYRCHNRIQTEEI 221
++ ++ + N R N Y CH ++Q EEI
Sbjct: 346 QSNRKTKPVNQNHRPNPVLTYTCHGKVQAEEI 377
>At2g37440.1 68415.m04592 endonuclease/exonuclease/phosphatase
family protein similar to inositol polyphosphate
5-phosphatase I (GI:10444261) and II (GI:10444263)
[Arabidopsis thaliana]; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 479
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 126 ETQQRGPQLGPNQRGNSEWRYRCHNRIQTEEI 221
++ ++ + N R N Y CH ++Q EEI
Sbjct: 427 QSNRKTKPVNQNHRPNPVLTYTCHGKVQAEEI 458
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,855,668
Number of Sequences: 28952
Number of extensions: 302077
Number of successful extensions: 785
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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