Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0007
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16180.1 68414.m01938 TMS membrane family protein / tumour di...    49   2e-06
At3g06170.1 68416.m00709 TMS membrane family protein / tumour di...    44   7e-05
At4g13345.2 68417.m02086 TMS membrane family protein / tumour di...    30   1.2  
At4g13345.1 68417.m02085 TMS membrane family protein / tumour di...    30   1.2  
At3g24460.1 68416.m03069 TMS membrane family protein / tumour di...    29   3.7  
At5g46700.1 68418.m05754 senescence-associated protein, putative...    28   6.4  

>At1g16180.1 68414.m01938 TMS membrane family protein / tumour
           differentially expressed (TDE) family protein contains
           Pfam domain, PF03348: TMS membrane protein/tumour
           differentially expressed protein (TDE)
          Length = 412

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 20/43 (46%), Positives = 31/43 (72%)
 Frame = +2

Query: 455 AVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYL 583
           AV R++    LFF +++++MIGVK+ KDPR GI +G W +K +
Sbjct: 79  AVLRVSLGNFLFFSILSVMMIGVKNQKDPRDGIHHGGWMMKII 121


>At3g06170.1 68416.m00709 TMS membrane family protein / tumour
           differentially expressed (TDE) family protein contains
           Pfam domain, PF03348: TMS membrane protein/tumour
           differentially expressed protein (TDE)
          Length = 409

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = +2

Query: 455 AVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLL 586
           AV R++F   LFF + ALIMIGVK   D R    +G W +K ++
Sbjct: 76  AVLRVSFGNFLFFAIYALIMIGVKDQNDRRDSWHHGGWGLKMIV 119


>At4g13345.2 68417.m02086 TMS membrane family protein / tumour
           differentially expressed (TDE) family protein contains
           Pfam domain, PF03348: TMS membrane protein/tumour
           differentially expressed protein (TDE)
          Length = 394

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 443 VGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLV 589
           +G   V R++F   LF+ +M L  +G   +   R    +G+W  K  ++
Sbjct: 75  LGTEGVLRVSFGCFLFYFIMFLSTVGTSKTHSSRDKWHSGWWFAKLFML 123


>At4g13345.1 68417.m02085 TMS membrane family protein / tumour
           differentially expressed (TDE) family protein contains
           Pfam domain, PF03348: TMS membrane protein/tumour
           differentially expressed protein (TDE)
          Length = 394

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 443 VGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLV 589
           +G   V R++F   LF+ +M L  +G   +   R    +G+W  K  ++
Sbjct: 75  LGTEGVLRVSFGCFLFYFIMFLSTVGTSKTHSSRDKWHSGWWFAKLFML 123


>At3g24460.1 68416.m03069 TMS membrane family protein / tumour
           differentially expressed (TDE) family protein contains
           Pfam domain, PF03348: TMS membrane protein/tumour
           differentially expressed protein (TDE)
          Length = 409

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 443 VGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLL 586
           +G   V R++    LF+ +M L  +G   +   R    +G+W +K ++
Sbjct: 82  LGTDGVLRVSLGCFLFYFVMFLSTLGTSKTHSSRDRWHSGWWFVKLIM 129


>At5g46700.1 68418.m05754 senescence-associated protein, putative
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 269

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 470 TFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLV 589
           T  +C+  L   +I++GV       AG   GFW I +LLV
Sbjct: 33  TVNSCVKLLQWPVIILGVLILLVGLAGFIGGFWRITWLLV 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,515,037
Number of Sequences: 28952
Number of extensions: 302539
Number of successful extensions: 683
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)