Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0006
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54380.1 68418.m06771 protein kinase family protein contains ...    31   0.53 
At1g36950.1 68414.m04606 zinc finger protein-related contains si...    28   6.6  
At3g04980.1 68416.m00541 DNAJ heat shock N-terminal domain-conta...    27   8.7  

>At5g54380.1 68418.m06771 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 855

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 434 FRFNKIRNSYILY*LFQNVTSTHELISNVIFSNKIYFYEFIEIGTVP 574
           F FN    SYI      NVTS    +S +  +N + F   IE+ +VP
Sbjct: 137 FSFNNFNGSYIFKEYTVNVTSEFLTLSFIPSNNSVVFVNAIEVVSVP 183


>At1g36950.1 68414.m04606 zinc finger protein-related contains
           similarity to zinc finger proteins (C3HC4-type RING
           finger)
          Length = 226

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 19  RKWWQEGEDAPFCNLDN 69
           RKWW +GED  F  +DN
Sbjct: 183 RKWWDQGEDV-FLKMDN 198


>At3g04980.1 68416.m00541 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 1165

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 598 IFFHYAECRYCADLYKFIKIYFIAKNH 518
           +F  +  CR+C   YK+++ Y     H
Sbjct: 144 VFTFWTRCRHCGQCYKYLREYMNTSMH 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,076,120
Number of Sequences: 28952
Number of extensions: 246787
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)