Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0004
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20370.1 68415.m02378 exostosin family protein contains Pfam ...    28   5.4  
At5g52170.1 68418.m06476 homeobox-leucine zipper family protein ...    27   7.1  
At3g28360.1 68416.m03544 ABC transporter family protein similar ...    27   7.1  
At4g28370.1 68417.m04061 zinc finger (C3HC4-type RING finger) fa...    27   9.4  
At2g05082.1 68415.m00531 hypothetical protein                          27   9.4  

>At2g20370.1 68415.m02378 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 619

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = -2

Query: 351 PSKQSNVMHRHIINFIKFIWWYTHTKNITLLIIINDTDSQICFHRIISSNKPIKAGNITY 172
           P+KQ  +M  ++IN I  + +      +       D   Q    ++    K +  G   Y
Sbjct: 493 PAKQVKIMRENVINLIPRLIYADPRSELETQKDAFDVSVQAVIDKVTRLRKNMIEGRTEY 552

Query: 171 D*FV-RFSWHFANL 133
           D FV   SW +A L
Sbjct: 553 DYFVEENSWKYALL 566


>At5g52170.1 68418.m06476 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           Anthocyaninless2 (ANL2) (GP:5702094) [Arabidopsis
           thaliana];  contains Pfam PF00046: Homeobox domain and
           Pfam PF01852: START domain
          Length = 682

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 416 GKKIILATKQLKDWFVNK 469
           GKK+ L +KQ+K WF N+
Sbjct: 91  GKKLTLESKQIKFWFQNR 108


>At3g28360.1 68416.m03544 ABC transporter family protein similar to
           P-glycoprotein homologue GI:2292907 from [Hordeum
           vulgare subsp. vulgare]
          Length = 1158

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 521 LANIILGCIFFIGKYVNGYMLIYSM 595
           L NI++    F+G Y+ G+ML++ +
Sbjct: 75  LPNILMNASAFVGSYIVGFMLLWRL 99


>At4g28370.1 68417.m04061 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 466

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -3

Query: 485 K*IHTIYLQTNLLTVLWLILFFFHCR---LKVFPNTQFCVCILT 363
           K +H  Y+     T L + L+ F C    ++V PN  +C+C+ T
Sbjct: 327 KPLHPYYILGMTATRLAIPLYVFGCPHNFMRVEPNKVWCICLCT 370


>At2g05082.1 68415.m00531 hypothetical protein
          Length = 231

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 425 IILATKQLKDWFVNKWCEFIYIRQTNH 505
           I +A  Q+ DWFVN W + I +   N+
Sbjct: 140 ICIAVGQICDWFVNHWLKRINLITYNY 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,873,016
Number of Sequences: 28952
Number of extensions: 231792
Number of successful extensions: 531
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)