Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0027
         (571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73540.1 68414.m08512 MutT/nudix family protein low similarit...    36   0.025
At1g18300.1 68414.m02286 MutT/nudix family protein similar to SP...    31   0.41 
At5g11240.1 68418.m01313 transducin family protein / WD-40 repea...    28   5.0  
At5g36200.1 68418.m04364 F-box family protein contains Pfam PF00...    27   8.8  

>At1g73540.1 68414.m08512 MutT/nudix family protein low similarity
           to SP|Q09790 Diadenosine 5',5'''-P1,P6-hexaphosphate
           hydrolase (EC 3.6.1.-) (Ap6A hydrolase)
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF00293: NUDIX domain
          Length = 198

 Score = 35.5 bits (78), Expect = 0.025
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +3

Query: 342 MVKEKPNSIRIYDDEGFRRRAACICVR----SDAETEVLLVTSSRRPDNWIXXXXXXXXX 509
           +V      ++ Y+  G+R+   C+  R       E EVLL+++ ++    +         
Sbjct: 44  LVSRTGRDLQRYNTAGYRQVVGCVPYRYKKHGGGEIEVLLISAQKKGKGMLLPKGGWEID 103

Query: 510 XXXXXTAMREVLEEAGVIGK 569
                 A+RE +EEAGV G+
Sbjct: 104 ESIEEAALRETIEEAGVTGQ 123


>At1g18300.1 68414.m02286 MutT/nudix family protein similar to
           SP|Q09790 Diadenosine 5',5'''-P1,P6-hexaphosphate
           hydrolase (EC 3.6.1.-) (Ap6A hydrolase)
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF00293: NUDIX domain
          Length = 207

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
 Frame = +3

Query: 342 MVKEKPNSIRIYDDEGFRRRAACICVR------SDAETEVL--LVTSSRRPDNWIXXXXX 497
           +V      ++ YD  G+R+   C+  R      +  ET+V+  L+ S+++    +     
Sbjct: 43  LVSRTGRDLQRYDHAGYRQVVGCVPYRYKKQEVNGVETQVIQVLLVSAQKGKGMLFPKGG 102

Query: 498 XXXXXXXXXTAMREVLEEAGVIGK 569
                     A+RE +EEAGV G+
Sbjct: 103 WETDESMEEAALRETIEEAGVTGE 126


>At5g11240.1 68418.m01313 transducin family protein / WD-40 repeat
           family protein contains 3 WD-40 repeats (PF00400);
           similar to uncharacterized protein KIAA0007 (GI:1663708)
           {Homo sapiens}  1.2e-11
          Length = 615

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = -1

Query: 481 IQLSGRLEDVTSRTSVSASERTQIHA 404
           +QLSGRL+ VT++ + +A  +TQI A
Sbjct: 546 LQLSGRLQLVTAQINKAAGSQTQITA 571


>At5g36200.1 68418.m04364 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain; similar to unknown protein
           (pir||T00841)
          Length = 471

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = -1

Query: 334 CKHVNTNETNDHKINTDIN*KEKL*NEQNFLMINKRHIRCILCRTYPFSTIKLHNVHKKS 155
           CK+ NT  +NDH     +  K     E   L++     +  L       ++ LH +HK++
Sbjct: 30  CKNWNTL-SNDHSFTRKLFGKTITTKENECLVVMMMDSKVYLM------SVNLHRIHKEN 82

Query: 154 NYNNNKTTI 128
           + NN K++I
Sbjct: 83  DDNNIKSSI 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,678,578
Number of Sequences: 28952
Number of extensions: 186105
Number of successful extensions: 384
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)