Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0025
(563 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 137 4e-33
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 135 2e-32
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 128 2e-30
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 126 1e-29
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 124 3e-29
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 112 2e-25
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 105 3e-23
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 94 7e-20
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 63 1e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 63 1e-10
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 62 2e-10
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 61 6e-10
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 60 1e-09
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 60 1e-09
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 58 3e-09
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 58 4e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 58 4e-09
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 58 5e-09
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 58 5e-09
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 58 5e-09
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 58 5e-09
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 57 9e-09
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 57 9e-09
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 57 9e-09
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 56 1e-08
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 56 1e-08
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 56 1e-08
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 56 2e-08
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 56 2e-08
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 55 3e-08
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 55 3e-08
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 55 4e-08
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 55 4e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 54 5e-08
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 54 7e-08
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 54 9e-08
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 53 1e-07
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 53 1e-07
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 53 2e-07
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 53 2e-07
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 52 2e-07
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 52 3e-07
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 52 3e-07
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 52 4e-07
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 52 4e-07
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 51 5e-07
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 51 5e-07
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 51 5e-07
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 51 6e-07
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 51 6e-07
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 51 6e-07
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 51 6e-07
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 50 8e-07
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 50 8e-07
At5g51300.2 68418.m06360 splicing factor-related contains simila... 50 1e-06
At5g51300.1 68418.m06359 splicing factor-related contains simila... 50 1e-06
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 50 1e-06
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 50 1e-06
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 50 1e-06
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 50 1e-06
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 50 1e-06
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 49 2e-06
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 49 2e-06
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 49 2e-06
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 49 2e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 49 2e-06
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 49 2e-06
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 48 3e-06
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 48 4e-06
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 48 4e-06
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 48 6e-06
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 48 6e-06
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 47 8e-06
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 47 8e-06
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 47 1e-05
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 47 1e-05
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 47 1e-05
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 46 2e-05
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 46 2e-05
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 45 3e-05
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 45 3e-05
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 45 3e-05
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 45 4e-05
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 44 7e-05
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 44 7e-05
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 44 7e-05
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 44 9e-05
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 44 9e-05
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 44 9e-05
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 44 9e-05
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 44 9e-05
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 43 1e-04
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 43 1e-04
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 43 1e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 43 1e-04
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 43 2e-04
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 43 2e-04
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 42 2e-04
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 42 2e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 2e-04
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 42 3e-04
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 42 3e-04
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 42 3e-04
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 41 5e-04
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 41 5e-04
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 41 7e-04
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 40 9e-04
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 40 9e-04
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 40 9e-04
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 40 9e-04
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 40 9e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 40 9e-04
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 40 9e-04
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 40 9e-04
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 40 9e-04
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 40 9e-04
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 40 0.001
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 40 0.002
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 40 0.002
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 40 0.002
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 40 0.002
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 40 0.002
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 39 0.002
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 39 0.002
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 39 0.002
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 39 0.002
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 39 0.003
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 38 0.004
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 38 0.004
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 38 0.004
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 38 0.004
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 38 0.005
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 38 0.005
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 37 0.008
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 37 0.008
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 37 0.008
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 37 0.008
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 37 0.011
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 37 0.011
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 37 0.011
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 36 0.014
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 35 0.033
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 35 0.033
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 35 0.033
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 35 0.033
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 35 0.043
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 34 0.057
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 34 0.075
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 34 0.075
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 34 0.075
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 34 0.075
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 34 0.075
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 33 0.100
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 33 0.100
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 33 0.100
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 33 0.100
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 33 0.100
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 33 0.100
At4g10610.1 68417.m01735 RNA-binding protein, putative 33 0.13
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 33 0.13
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 33 0.13
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 33 0.13
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 33 0.17
At5g24440.1 68418.m02880 RNA-binding protein, putative 33 0.17
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 33 0.17
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.17
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.17
At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to c... 33 0.17
At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c... 33 0.17
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 32 0.23
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 32 0.23
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 32 0.23
At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical t... 32 0.30
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 32 0.30
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 32 0.30
At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family... 31 0.40
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family... 31 0.40
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 31 0.40
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 31 0.40
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 31 0.40
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 31 0.53
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 31 0.53
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 31 0.53
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 31 0.53
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 30 0.93
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 30 1.2
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 30 1.2
At1g49620.1 68414.m05563 kip-related protein 7 (KRP7) / cyclin-d... 29 1.6
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 29 2.1
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 29 2.1
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 29 2.1
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 2.1
At1g10010.1 68414.m01129 amino acid permease, putative similar t... 29 2.8
At5g19810.1 68418.m02354 proline-rich extensin-like family prote... 28 3.7
At4g35870.1 68417.m05094 expressed protein 28 3.7
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 28 3.7
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 28 3.7
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 28 3.7
At3g25240.1 68416.m03153 hypothetical protein contains Pfam prof... 28 5.0
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 28 5.0
At1g23720.1 68414.m02994 proline-rich extensin-like family prote... 28 5.0
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ... 27 6.5
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 27 6.5
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 27 6.5
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 27 6.5
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 27 6.5
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 6.5
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 6.5
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 6.5
At4g13390.1 68417.m02092 proline-rich extensin-like family prote... 27 6.5
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 27 6.5
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein... 27 8.7
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 27 8.7
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 27 8.7
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 27 8.7
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 27 8.7
At1g23050.1 68414.m02880 hydroxyproline-rich glycoprotein family... 27 8.7
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 137 bits (332), Expect = 4e-33
Identities = 76/186 (40%), Positives = 107/186 (57%), Gaps = 4/186 (2%)
Frame = +3
Query: 3 RRSSTREQLKSERLTRY---QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DG 170
R R + + ER+ R+ QG NLY+KNLDD++DDE+L++ F+ +G +TS+KVML G
Sbjct: 310 REEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQG 369
Query: 171 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTXXXXXXXXXXX 350
S+GFGFV +S+PEEA +A++EMNG+++G KPLY+ALAQRKEDR+AHL
Sbjct: 370 MSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHL---QALFSQIRA 426
Query: 351 XXXXXXIFQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASGHI 530
P G +P PP Y G + + + QP P + SG
Sbjct: 427 PGPMSGFHHPPGGP---MPG-PPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGP- 481
Query: 531 ANFMQP 548
NF+ P
Sbjct: 482 GNFIVP 487
Score = 78.2 bits (184), Expect = 4e-15
Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Frame = +3
Query: 18 REQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFV 194
+E+ + E + N+YVKNL I ++ LRK F FG I+SA VM + G S+ FGFV
Sbjct: 215 QERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFV 274
Query: 195 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 314
F E A AV +MNG +G LYV AQ+K +R+ L
Sbjct: 275 NFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEEL 314
Score = 74.1 bits (174), Expect = 6e-14
Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Frame = +3
Query: 45 TRYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEA 218
TR G N+++KNLD +ID++ L + F+ FGTI S KV ++ GRSKG+GFV F E A
Sbjct: 130 TRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESA 189
Query: 219 TKAVTEMNGRIVGTKPLYVALAQRKEDR 302
A+ ++NG ++ K ++V R+++R
Sbjct: 190 QAAIDKLNGMLMNDKQVFVGHFIRRQER 217
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 135 bits (327), Expect = 2e-32
Identities = 65/99 (65%), Positives = 80/99 (80%), Gaps = 1/99 (1%)
Frame = +3
Query: 21 EQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVC 197
EQ E + QG NLYVKNLD+++ D++LR+ FAPFGTITS KVM + G S+G GFV
Sbjct: 314 EQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVA 373
Query: 198 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 314
FS+PEEAT+A+TEMNG+++ TKPLYVALAQRKEDRKA L
Sbjct: 374 FSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARL 412
Score = 80.2 bits (189), Expect = 9e-16
Identities = 37/85 (43%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 239
N+YVKNL +++ DE L K F FG TS +M + +G+SKGFGFV F + ++A +AV +
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 240 NGRIVGTKPLYVALAQRKEDRKAHL 314
NG+ K +V AQ+K +R+ L
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETEL 309
Score = 67.7 bits (158), Expect = 5e-12
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Frame = +3
Query: 48 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEAT 221
R GV N+++KNLD +ID + L + F+ FG I S KV ++ G+SKG+GFV + + E A
Sbjct: 128 RKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQ 187
Query: 222 KAVTEMNGRIVGTKPLYV 275
A+ ++NG ++ K +YV
Sbjct: 188 GAIDKLNGMLLNDKQVYV 205
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTE 236
+LYV +LD T+ D +L + F G + S +V + RS G+G+V +++P++A++A+ E
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 237 MNGRIVGTKPLYVALAQR 290
+N + + + V + R
Sbjct: 106 LNFMALNGRAIRVMYSVR 123
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 128 bits (310), Expect = 2e-30
Identities = 59/108 (54%), Positives = 84/108 (77%), Gaps = 4/108 (3%)
Frame = +3
Query: 3 RRSSTREQLKSERLTRY---QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-G 170
R R + + ER++R+ QG NLY+KNLDD+++DE+L++ F+ +G +TS KVM+ G
Sbjct: 306 REEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQG 365
Query: 171 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 314
S+GFGFV +S+PEEA A+ EMNG+++G KPLYVALAQRKE+R+AHL
Sbjct: 366 LSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHL 413
Score = 81.4 bits (192), Expect = 4e-16
Identities = 43/85 (50%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 239
N+YVKNL I D+ L+K F +G I+SA VM + G S+ FGFV F SPE A AV +M
Sbjct: 226 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 285
Query: 240 NGRIVGTKPLYVALAQRKEDRKAHL 314
NG +G LYV AQ+K DR+ L
Sbjct: 286 NGISLGEDVLYVGRAQKKSDREEEL 310
Score = 74.9 bits (176), Expect = 3e-14
Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Frame = +3
Query: 45 TRYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEA 218
TR G N+++KNLD +ID++ L + F+ FGTI S KV ++ GRSKG+GFV F E A
Sbjct: 126 TRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETA 185
Query: 219 TKAVTEMNGRIVGTKPLYVALAQRKEDR 302
A+ ++NG ++ K ++V R++DR
Sbjct: 186 QAAIDKLNGMLLNDKQVFVGHFVRRQDR 213
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 126 bits (303), Expect = 1e-29
Identities = 74/187 (39%), Positives = 107/187 (57%), Gaps = 7/187 (3%)
Frame = +3
Query: 21 EQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVC 197
EQ E ++Q NLYVKNLD +I DE+L++ F+PFGT+TS+KVM + +G SKG GFV
Sbjct: 119 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVA 178
Query: 198 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTXXXXXXXXXXXXXXXXXIFQ 377
F++PEEAT+A+++++G+++ +KPLYVA+AQRKEDR+ L Q
Sbjct: 179 FATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRL--------QAQFSQVRPVAMQ 230
Query: 378 PSGASGFFVPSLPPA------PRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASGHIANF 539
PS G +P PP +YG A I P P + Q + P + G + +F
Sbjct: 231 PS--VGPRMPVYPPGGPGIGQQMFYGQAPPAMI-PPQPGYGYQQQLVPGMRPGGGPVPSF 287
Query: 540 MQPTYRP 560
P +P
Sbjct: 288 FMPMVQP 294
Score = 79.8 bits (188), Expect = 1e-15
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Frame = +3
Query: 18 REQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFV 194
R Q + + + N+YVKNL ++ D+ L+ F +G ITSA VM + +G+SKGFGFV
Sbjct: 15 RRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFV 74
Query: 195 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 314
F + ++A +AV +NG K YV AQ+K +R+ L
Sbjct: 75 NFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 114
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 124 bits (300), Expect = 3e-29
Identities = 61/99 (61%), Positives = 77/99 (77%), Gaps = 1/99 (1%)
Frame = +3
Query: 21 EQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVC 197
EQ S+ ++ G+NLYVKNLDDT+ DE+LR+ FA FGTITS KVM + G SKG GFV
Sbjct: 315 EQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVA 374
Query: 198 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 314
FS+ EA++ + EMNG++VG KPLYVALAQRKE+R+A L
Sbjct: 375 FSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKL 413
Score = 80.6 bits (190), Expect = 7e-16
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +3
Query: 18 REQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFV 194
R++ + + + N+YVKNL + D+ L+ F +G+I+SA VM + DG+S+ FGFV
Sbjct: 211 RKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFV 270
Query: 195 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLT 317
F +PE+A +AV +NG+ K YV AQ+K +R+ L+
Sbjct: 271 NFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELS 311
Score = 74.5 bits (175), Expect = 4e-14
Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Frame = +3
Query: 48 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEAT 221
R GV NL+VKNLD ++D++ L + F+ GTI S KV + G+S+G+GFV F + + A
Sbjct: 129 RRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAK 188
Query: 222 KAVTEMNGRIVGTKPLYVALAQRKEDRKA 308
A+ ++NG+++ K ++V RKE+R++
Sbjct: 189 NAIEKLNGKVLNDKQIFVGPFLRKEERES 217
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 112 bits (269), Expect = 2e-25
Identities = 56/99 (56%), Positives = 77/99 (77%), Gaps = 1/99 (1%)
Frame = +3
Query: 21 EQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVC 197
E++ + TR +G+NLYVKNLDD++D+ +L + F+ FGTITS KVM+ +G SKG GFV
Sbjct: 211 EKIIRDMKTR-KGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVE 269
Query: 198 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 314
FS+ EEA+KA+ +MNG++VG KP+YV+LAQ KE K HL
Sbjct: 270 FSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHL 308
Score = 76.6 bits (180), Expect = 1e-14
Identities = 41/85 (48%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 239
N+YVKNL +T D L++ F FG ITSA VM + +G+S+ FGFV F E A A+ +M
Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 240 NGRIVGTKPLYVALAQRKEDRKAHL 314
NG +V K L+V AQRK +R L
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDL 204
Score = 53.6 bits (123), Expect = 9e-08
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 239
N++VKNLD++ID+++L F+ FG + S KV + G SKG+GFV F S A
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 240 NGRIVGTKPLYV 275
NG ++ + ++V
Sbjct: 92 NGTLIRNQHIHV 103
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 105 bits (251), Expect = 3e-23
Identities = 55/108 (50%), Positives = 73/108 (67%), Gaps = 4/108 (3%)
Frame = +3
Query: 3 RRSSTREQLKS---ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-G 170
R REQ K E+ + N+YVKN++ + +E LRK F+ GTITS K+M ++ G
Sbjct: 282 REQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKG 341
Query: 171 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 314
+SKGFGFVCFS+PEEA AV +G++ KPLYVA+AQ+KEDRK L
Sbjct: 342 KSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQL 389
Score = 74.1 bits (174), Expect = 6e-14
Identities = 35/82 (42%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEM 239
NLY+KNLD + ++ LR++FA FG I S + ++ R +G+ FV F +PE+A +A +
Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETV 261
Query: 240 NGRIVGTKPLYVALAQRKEDRK 305
NG G+K LYV AQ+K +R+
Sbjct: 262 NGTKFGSKCLYVGRAQKKAERE 283
Score = 69.3 bits (162), Expect = 2e-12
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = +3
Query: 48 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEAT 221
R GV N++VKNL +++ + L+ F FG I S KV LEDG+S+G+GFV F + A
Sbjct: 107 RRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAH 166
Query: 222 KAVTEMNGRIVGTKPLYVALAQRKEDR 302
A+ +N IV K +YV +K DR
Sbjct: 167 AAIQTLNSTIVADKEIYVGKFMKKTDR 193
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 236
+LYV +L ++ + L FA F ++TS ++ + GRS +G+ F S ++A A+ +
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 237 MNGRIVGTKPLYVALAQRKEDRK 305
N ++ K + V + R D +
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDAR 107
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 93.9 bits (223), Expect = 7e-20
Identities = 46/81 (56%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEM 239
NLYVKNL +++++ RLR+ F +G I SAKVM E+GRSKGFGFVCFS+ EE+ +A +
Sbjct: 305 NLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYL 364
Query: 240 NGRIVGTKPLYVALAQRKEDR 302
NG +V KP+ V +A+RKEDR
Sbjct: 365 NGFLVDGKPIVVRVAERKEDR 385
Score = 81.8 bits (193), Expect = 3e-16
Identities = 43/98 (43%), Positives = 60/98 (61%)
Frame = +3
Query: 15 TREQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFV 194
++ L R TR NLYVKNLD +I L + F PFG+I S KV+ E+G+SKGFGFV
Sbjct: 97 SQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFV 156
Query: 195 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 308
F + + A A + ++G +V K L+VA K++R A
Sbjct: 157 QFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAA 194
Score = 77.0 bits (181), Expect = 8e-15
Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 239
N+YVKNL +T+ D+ L F+ +GT++S VM + GRS+GFGFV F +PE A KA+ +
Sbjct: 203 NVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 240 NGRIVGTKPLYVALAQRKEDRKAHL 314
G +G+K L+V A +K++R+ L
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREML 287
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 1e-10
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +3
Query: 48 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 221
RY L+V L DD L++ F FG +T A V+ E GRS+GFGFV FS + A
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 222 KAVTEMNGRIVGTKPLYVALAQRK 293
A+ EM+G+ + + + V LA +
Sbjct: 91 NAIKEMDGKELNGRQIRVNLATER 114
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 1e-10
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +3
Query: 48 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 221
RY L+V L DD L++ F FG +T A V+ E GRS+GFGFV FS + A
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 222 KAVTEMNGRIVGTKPLYVALAQRK 293
A+ EM+G+ + + + V LA +
Sbjct: 91 NAIKEMDGKELNGRQIRVNLATER 114
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 62.1 bits (144), Expect = 2e-10
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
L+V L D+ LR+ F+PFG I A+++ E R KGFGF+ F S ++A KA+ +
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 240 NGRIVGTKPLYVALAQRKEDRKA 308
+G+IV + ++V +A+ E+ +A
Sbjct: 69 DGKIVDGRLIFVEVAKNAEEVRA 91
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 60.9 bits (141), Expect = 6e-10
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 239
L+ +L + ++D+ L K FA F T AKV+ + G++KG+GFV F +P + A+ EM
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEM 198
Query: 240 NGRIVGTKPLYVALAQRKE 296
NG+ VG +P+ + + KE
Sbjct: 199 NGKYVGNRPIKLRKSSWKE 217
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
L+V L +E+L+ FA FG + A+V+ + GRSKGFGFV +++ E+A KA EM
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 240 NGRIVGTKPLYVALAQRKEDRK 305
N + + ++V A+ +E R+
Sbjct: 96 NAKFLDGWVIFVDPARPREPRR 117
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 60.1 bits (139), Expect = 1e-09
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKA 227
G NL++ NLD +D++ L F+ FG I S ++ D G S+GFGF+ + S E + A
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
Query: 228 VTEMNGRIVGTKPLYVALAQRKEDR 302
+ M G+ + + + V+ A +K+ +
Sbjct: 171 IESMTGQYLSNRQITVSYAYKKDTK 195
Score = 33.1 bits (72), Expect = 0.13
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +3
Query: 48 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEAT 221
R Q +YV LD + +E L + F G + + V + + +GF+ + S E+A
Sbjct: 21 RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80
Query: 222 KAVTEMNGRIVGTKPLYVALAQRKEDRKA 308
A+ +N + KP+ V A +D+K+
Sbjct: 81 YAIKVLNMIKLHGKPIRVNKA--SQDKKS 107
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 58.4 bits (135), Expect = 3e-09
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKA 227
+G NL++ N+ D+ L F FG + SAKV ++ G SK FGFV + S A A
Sbjct: 347 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNA 406
Query: 228 VTEMNGRIVGTKPLYVAL 281
+ MNGR +G K L V L
Sbjct: 407 IDMMNGRHLGGKKLKVQL 424
Score = 35.9 bits (79), Expect = 0.019
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 242
L+V L + + ++ F+ +GTI +++ SKG F+ + + E+A A+ +N
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESIN 167
Query: 243 G--RIVG-TKPLYVALAQRKEDR 302
G ++ G T PL V A + +R
Sbjct: 168 GKHKMEGSTVPLVVKWADTERER 190
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 58.0 bits (134), Expect = 4e-09
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +3
Query: 48 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 221
R L++ L DD LR FA FG + AKV++ E GRS+GFGFV F+ AT
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90
Query: 222 KAVTEMNGR 248
A++EM+G+
Sbjct: 91 AAISEMDGK 99
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 58.0 bits (134), Expect = 4e-09
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +3
Query: 48 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 221
R L++ L DD LR FA FG + AKV++ E GRS+GFGFV F+ AT
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90
Query: 222 KAVTEMNGR 248
A++EM+G+
Sbjct: 91 AAISEMDGK 99
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 57.6 bits (133), Expect = 5e-09
Identities = 25/65 (38%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 236
+L+VK D++ + RL+K F+ FG +T+ K++ + +S G+G+V F+S E+A AV
Sbjct: 59 SLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEA 118
Query: 237 MNGRI 251
MNG++
Sbjct: 119 MNGKV 123
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 57.6 bits (133), Expect = 5e-09
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 236
+L+VK D++ + RL+K F+ FG +T+ K++ + +S G+G+V F+S E+A AV
Sbjct: 78 SLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEA 137
Query: 237 MNGRIVGTKPLYVALAQ 287
MNG+ + + V Q
Sbjct: 138 MNGKFFDGRFILVKFGQ 154
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 57.6 bits (133), Expect = 5e-09
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 230
G LYV NL +DD L F G + A+V+ + GRSKGFGFV SS +E KA+
Sbjct: 248 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 307
Query: 231 TEMNGRIVGTKPLYVALAQRKEDR 302
+NG + + + V+ A+ + R
Sbjct: 308 NSLNGADLDGRQIRVSEAEARPPR 331
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 36 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 209
ER + + L+V NL +D +L + F G + +V+ + GRS+GFGFV S+
Sbjct: 91 ERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTA 150
Query: 210 EEATKAVTEMNGRIVGTKPLYV 275
E A + NG +PL V
Sbjct: 151 AEVEAAAQQFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 57.6 bits (133), Expect = 5e-09
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 230
G LYV NL +DD L F G + A+V+ + GRSKGFGFV SS +E KA+
Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 315
Query: 231 TEMNGRIVGTKPLYVALAQRKEDR 302
+NG + + + V+ A+ + R
Sbjct: 316 NSLNGADLDGRQIRVSEAEARPPR 339
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 36 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 209
ER + + L+V NL +D +L + F G + +V+ + GRS+GFGFV S+
Sbjct: 91 ERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTA 150
Query: 210 EEATKAVTEMNGRIVGTKPLYV 275
E A + NG +PL V
Sbjct: 151 AEVEAAAQQFNGYEFEGRPLRV 172
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 56.8 bits (131), Expect = 9e-09
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 227
+G ++V L + D L + F+ FG I ++MLE GRS+GFGF+ F+ ++
Sbjct: 5 EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDES 64
Query: 228 VTEMNGRIVGTKPLYVALAQRKEDR 302
+ EM+GR G + + V A+ K R
Sbjct: 65 IREMHGRDFGDRVISVNRAEPKLGR 89
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 56.8 bits (131), Expect = 9e-09
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 230
G NL++ N+ +D+ L F PFG + SAKV ++ G SK FGF+ + S A A+
Sbjct: 338 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 397
Query: 231 TEMNGRIVGTKPLYVAL 281
MNG + K L V L
Sbjct: 398 NTMNGCQLSGKKLKVQL 414
Score = 37.9 bits (84), Expect = 0.005
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 242
L+V L + + ++ F+ +GTI +++ + SKG F+ + S E+A A+ +N
Sbjct: 111 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALN 170
Query: 243 GRIV---GTKPLYVALAQRKEDRKA 308
GR + PL V A +++R+A
Sbjct: 171 GRHIMEGANVPLIVKWADTEKERQA 195
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 56.8 bits (131), Expect = 9e-09
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 230
G NL++ N+ +D+ L F PFG + SAKV ++ G SK FGF+ + S A A+
Sbjct: 329 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 388
Query: 231 TEMNGRIVGTKPLYVAL 281
MNG + K L V L
Sbjct: 389 NTMNGCQLSGKKLKVQL 405
Score = 37.9 bits (84), Expect = 0.005
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 242
L+V L + + ++ F+ +GTI +++ + SKG F+ + S E+A A+ +N
Sbjct: 102 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALN 161
Query: 243 GRIV---GTKPLYVALAQRKEDRKA 308
GR + PL V A +++R+A
Sbjct: 162 GRHIMEGANVPLIVKWADTEKERQA 186
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 56.4 bits (130), Expect = 1e-08
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 236
++V +L + D L F +G++ AKV+L+ GRSKG+GFV F+ E +A+TE
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 237 MNGRIVGTKPLYVALAQRK 293
MNG+ T+P+ + A K
Sbjct: 216 MNGQYCSTRPMRIGPAANK 234
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 56.4 bits (130), Expect = 1e-08
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +3
Query: 48 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEAT 221
RY LY+ L D+ L+ F+ F +T A+VM GRS+G+GFV F S + A
Sbjct: 27 RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSAN 86
Query: 222 KAVTEMNGR 248
A++ MNG+
Sbjct: 87 SAISAMNGQ 95
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 56.4 bits (130), Expect = 1e-08
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 236
+LY+ NLD + +E L F+ FG + + V+ +D G S+GF F+ F S + A +A+
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRS-VLAKDFRGESRGFAFIEFESADSAGRAMLH 76
Query: 237 MNGRIVGTKPLYVALAQRKED 299
M+GR++G K L V + ED
Sbjct: 77 MDGRLIGQKILCVQRTPKVED 97
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 236
NL+V L E LR FA FG + AKV+ + G SKGFGFV +++ E++ K +
Sbjct: 57 NLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAG 116
Query: 237 MNGRIVGTKPLYVALAQRKEDRKAH 311
M+G+ + ++ A+ +E +++
Sbjct: 117 MDGKFLDGWVIFAEYARPREQSQSY 141
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 55.6 bits (128), Expect = 2e-08
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 236
N++V +L + D L F+ F + + A+VM + GRS+GFGFV F + ++A A+ E
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 208
Query: 237 MNGRIVGTKPL 269
MNG+ V ++ +
Sbjct: 209 MNGKWVSSRQI 219
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 242
++Y N+ + + L++ FA G I S K++ +D S +GFV + A+ A+ +N
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS--YGFVHYFDRRCASMAIMTLN 121
Query: 243 GRIVGTKPLYVALAQ---RKEDRKAH 311
GR + +P+ V A ++ED +H
Sbjct: 122 GRHIFGQPMKVNWAYATGQREDTSSH 147
Score = 32.7 bits (71), Expect = 0.17
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 233
Q +YV NL + L + F G +V ++ R KGFGFV +++ +EA A+
Sbjct: 267 QFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQ--RDKGFGFVRYNTHDEAALAIQ 324
Query: 234 EMNGR 248
N +
Sbjct: 325 MGNAQ 329
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 55.2 bits (127), Expect = 3e-08
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
+YV NL T D+ LR+ F+ +G + A VM + RS+GFGFV +SS EA AV+ M
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 240 NGRIVGTKPLYVAL 281
+G+ + + + V L
Sbjct: 65 DGKELNGRRVSVKL 78
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 236
N++V +L + D L + F+ F + + A+VM + GRS+GFGFV F + ++A A+ E
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
Query: 237 MNGRIVGTKPL 269
MNG+ + ++ +
Sbjct: 205 MNGKWLSSRQI 215
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 242
++YV N+ + + L++ F G + S+K++ +D S +GFV + A A+ +N
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS--YGFVHYFDRRSAALAILSLN 117
Query: 243 GRIVGTKPLYVALAQ---RKEDRKAH 311
GR + +P+ V A ++ED +H
Sbjct: 118 GRHLFGQPIKVNWAYATGQREDTSSH 143
Score = 30.7 bits (66), Expect = 0.70
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 230
Q +YV NL + L + F G +V ++ R KGFGFV +++ EA A+
Sbjct: 263 QFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQ--RDKGFGFVRYNTHPEAALAI 319
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 54.8 bits (126), Expect = 4e-08
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Frame = +3
Query: 45 TRYQGV--NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPE 212
T+ +GV L++ L ++ L + F+ G + A+++++ RSKGFGFV F+S +
Sbjct: 27 TQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASAD 86
Query: 213 EATKAVTEMNGRIVGTKPLYVALAQRKE 296
EA KA+ E NG+ + + ++V A+ K+
Sbjct: 87 EAQKALMEFNGQQLNGRTIFVDYAKAKQ 114
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 54.8 bits (126), Expect = 4e-08
Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
+YV NL +D+ RL + F+ G + A+V+ E GRS+GFGFV S +E +A++ +
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 240 NGRIVGTKPLYVALAQRKEDRKAH 311
+G+ + + + V +A+ + R+ +
Sbjct: 306 DGQNLEGRAIRVNVAEERPPRRGY 329
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
L+V NL ++ + L F GT+ A+V+ E +S+GFGFV SS +EA AV +
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 240 N 242
N
Sbjct: 212 N 212
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 54.4 bits (125), Expect = 5e-08
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
L++ + ++D++ LR+ F +G + +V+L E GRS+GFGFV F+S E A+ A+ +
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 240 NGR 248
+GR
Sbjct: 102 DGR 104
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 54.0 bits (124), Expect = 7e-08
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 230
G +YV NL +DD L F+ G + A+V+ + GRSKGFGFV + S +E A+
Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262
Query: 231 TEMNGRIVGTKPLYVALAQRKEDRKAH 311
++G + + + V+ A+ + R+ +
Sbjct: 263 KSLDGADLDGRQIRVSEAEARPPRRQY 289
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 60 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 233
+ L+V NL +D +L + F G + +V+ + GRS+GFGFV SS E A
Sbjct: 91 LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQ 150
Query: 234 EMNGRIVGTKPLYV 275
+ NG + +PL V
Sbjct: 151 QFNGYELDGRPLRV 164
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 53.6 bits (123), Expect = 9e-08
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Frame = +3
Query: 60 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 230
++++V +L + D L + F+ + ++ SAKV+++ GRSKG+GFV F E ++A+
Sbjct: 202 LSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRAL 261
Query: 231 TEMNGRIVGTKPLYVALAQRK 293
TEMNG + + V +A K
Sbjct: 262 TEMNGAYCSNRQMRVGIATPK 282
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/64 (34%), Positives = 37/64 (57%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
++V +D + DE LR+ F+ FG + S K+ + KG GFV F+ + A A+ +NG
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV----GKGCGFVQFADRKSAEDAIESLNG 378
Query: 246 RIVG 257
++G
Sbjct: 379 TVIG 382
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 53.2 bits (122), Expect = 1e-07
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Frame = +3
Query: 60 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 230
++++V +L + D L + F+ + ++ +AKV+L+ GRSKG+GFV F E TKA+
Sbjct: 197 LSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Query: 231 TEMNG 245
TEMNG
Sbjct: 257 TEMNG 261
Score = 34.3 bits (75), Expect = 0.057
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGT--ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT 233
++V +L +D+ L FA I S KV+ +G S+G+GFV F S + A K +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 234 EMNG 245
E NG
Sbjct: 163 EFNG 166
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 53.2 bits (122), Expect = 1e-07
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Frame = +3
Query: 60 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 230
++++V +L + D L + F+ + ++ +AKV+L+ GRSKG+GFV F E TKA+
Sbjct: 197 LSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Query: 231 TEMNG 245
TEMNG
Sbjct: 257 TEMNG 261
Score = 47.6 bits (108), Expect = 6e-06
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Frame = +3
Query: 42 LTRYQG----VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSP 209
LTR +G ++V LD ++ DE L++ F FG I S K+ + KG GFV F +
Sbjct: 294 LTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV----GKGCGFVQFVNR 349
Query: 210 EEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 305
A +A+ ++NG ++G + + ++ + +++
Sbjct: 350 PNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 381
Score = 34.3 bits (75), Expect = 0.057
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGT--ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT 233
++V +L +D+ L FA I S KV+ +G S+G+GFV F S + A K +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 234 EMNG 245
E NG
Sbjct: 163 EFNG 166
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 239
L+V NL T+ E L F G + A+V+ + GRS+G+GFVC+SS E A+ +
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238
Query: 240 NGRIVGTKPLYVALAQRKE 296
+G + + + V LAQ K+
Sbjct: 239 DGFELEGRAIRVNLAQGKK 257
Score = 32.3 bits (70), Expect = 0.23
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
LY NL +D L + F +V+ + G+S+GF FV S+ E+ + +
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 240 NGRIVGTKPLYVALAQRKEDRKAHL 314
+G + L V A + + K L
Sbjct: 147 DGTEYLGRALKVNFADKPKPNKEPL 171
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Frame = +3
Query: 60 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 230
++++V +L + D L + FA + ++ AKV+++ GRSKG+GFV F E ++A+
Sbjct: 213 LSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAM 272
Query: 231 TEMNGRIVGTKPLYVALAQRK 293
TEMNG ++ + V +A K
Sbjct: 273 TEMNGAFCSSRQMRVGIATPK 293
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/64 (32%), Positives = 38/64 (59%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
++V LD + +E L + F+ FG + S K+ + KG GFV F++ + A +A+ +NG
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV----GKGCGFVQFANRQSAEEAIGNLNG 384
Query: 246 RIVG 257
++G
Sbjct: 385 TVIG 388
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 52.4 bits (120), Expect = 2e-07
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEF-APFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 233
+++V +L + D L++ F + ++ AKV+ + GRSKG+GFV F+ E +A+
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 234 EMNGRIVGTKPLYVALAQRKED 299
EMNG T+P+ ++ A K++
Sbjct: 177 EMNGLYCSTRPMRISAATPKKN 198
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +3
Query: 72 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRI 251
V NLD + +E L+K F+ G + K+ +KG+G+V F + A +AV M G++
Sbjct: 241 VANLDQNVTEEELKKAFSQLGEVIYVKIPA----TKGYGYVQFKTRPSAEEAVQRMQGQV 296
Query: 252 VGTKPLYVA 278
+G + + ++
Sbjct: 297 IGQQAVRIS 305
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEF-APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 236
++V +L + D L + F A + ++ AKV+ + GRSKG+GFV F+ E +A+TE
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 237 MNGRIVGTKPLYVALAQRKE 296
MNG+ ++P+ A K+
Sbjct: 235 MNGQYCSSRPMRTGPAANKK 254
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 52.0 bits (119), Expect = 3e-07
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Frame = +3
Query: 60 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 230
++++V +L + D L + F+ + ++ +AKV+L+ GRSKG+GFV F E TKA+
Sbjct: 199 LSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 258
Query: 231 TEMNG 245
TEMNG
Sbjct: 259 TEMNG 263
Score = 48.4 bits (110), Expect = 3e-06
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Frame = +3
Query: 27 LKSERLTRYQG----VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFV 194
+ S TR +G ++V LD ++ DE L++ F+ FG I S K+ + KG GFV
Sbjct: 291 MPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV----GKGCGFV 346
Query: 195 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 305
F + A +A+ ++NG ++G + + ++ + +++
Sbjct: 347 QFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 383
Score = 34.7 bits (76), Expect = 0.043
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEF--APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT 233
++V +L + +D+ L F A I S KV+ +G S+G+GFV F S + A K +
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 234 EMNG 245
E NG
Sbjct: 165 EFNG 168
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 51.6 bits (118), Expect = 4e-07
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEF-APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 236
++V +L + D L + F A + ++ AKV+++ GR+KG+GFV FS E +A+TE
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 237 MNGRIVGTKPLYVALAQRKE 296
MNG T+P+ + A K+
Sbjct: 217 MNGVPCSTRPMRIGPAASKK 236
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 51.6 bits (118), Expect = 4e-07
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEF-APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 236
++V +L + D L + F A + ++ AKV+++ GR+KG+GFV FS E +A+TE
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 237 MNGRIVGTKPLYVALAQRKE 296
MNG T+P+ + A K+
Sbjct: 217 MNGVPCSTRPMRIGPAASKK 236
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 51.2 bits (117), Expect = 5e-07
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +3
Query: 69 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 242
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 243 GRIVGTKPLYVALAQRK 293
G+ + + + V AQ +
Sbjct: 69 GKELDGRVITVNEAQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 51.2 bits (117), Expect = 5e-07
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +3
Query: 69 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 242
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 243 GRIVGTKPLYVALAQRK 293
G+ + + + V AQ +
Sbjct: 69 GKELDGRVITVNEAQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 51.2 bits (117), Expect = 5e-07
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +3
Query: 69 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 242
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 243 GRIVGTKPLYVALAQRK 293
G+ + + + V AQ +
Sbjct: 69 GKELDGRVITVNEAQSR 85
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 50.8 bits (116), Expect = 6e-07
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
+YV NL +D RL + F+ G + A+V+ E GRS+GFGFV S+ E A+ +
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 240 NGRIVGTKPLYVALAQRKEDR 302
+G+ + + + V +A+ + R
Sbjct: 269 DGQNLEGRAIKVNVAEERTRR 289
Score = 45.2 bits (102), Expect = 3e-05
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
L+V NL +D + L F GT+ ++V+ + +S+GFGFV S+ EEA KAV +
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 240 NGRIVGTKPLYVALAQRKEDR 302
N V + L V A + R
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSR 195
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 50.8 bits (116), Expect = 6e-07
Identities = 23/76 (30%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 239
+ V+NL + ++ L++EF+ FG I K++ ++ RSKG+ F+ F+S ++A A+ M
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 240 NGRIVGTKPLYVALAQ 287
+ R+ + +Y+ +A+
Sbjct: 102 DRRMYNGRMIYIDIAK 117
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 50.8 bits (116), Expect = 6e-07
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEF--APFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 233
LYV NL LR+ F A F + SA+V+ D GRS G+GFV F++ EEA A+T
Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPV-SARVVFADPEGRSSGYGFVSFATREEAENAIT 254
Query: 234 EMNGRIVGTKPLYVALAQR 290
++NG+ + +P+ + + R
Sbjct: 255 KLNGKEIMGRPITLKFSLR 273
Score = 41.1 bits (92), Expect = 5e-04
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Frame = +3
Query: 9 SSTREQLKSERLTRYQGVNL----YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGR 173
S+ E + E+ Q NL +V NL ++ + + F GT+ + +++ + DG+
Sbjct: 74 SADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGK 133
Query: 174 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 290
++GF FV +S EEA A+ + + V + + V+ A+R
Sbjct: 134 NRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARR 172
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 50.8 bits (116), Expect = 6e-07
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV--- 230
++V L + D E L++ F FG I A V+L E G S+GFGFV + S E A A+
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
Query: 231 --TEMNGRIVGTKP 266
E++GRI+G P
Sbjct: 98 QNKELDGRIIGVHP 111
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 50.4 bits (115), Expect = 8e-07
Identities = 25/66 (37%), Positives = 40/66 (60%)
Frame = +3
Query: 99 DERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 278
D+ LR+ FAPF + + + R KGFGF+ F S ++A KA+ +NG+IV + ++V
Sbjct: 84 DQSLRQLFAPFARLIKDQ---QTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVE 140
Query: 279 LAQRKE 296
A+ E
Sbjct: 141 TAKEVE 146
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 50.4 bits (115), Expect = 8e-07
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITS----AKVMLED--GRSKGFGFVCFSSPEEATK 224
N++V +L + D L F+ F + +S A+VM + GRS+GFGFV F + ++A
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQT 208
Query: 225 AVTEMNGRIVGTKPL 269
A+ EMNG+ V ++ +
Sbjct: 209 AINEMNGKWVSSRQI 223
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 242
++Y N+ + + L++ FA G I S K++ +D S +GFV + A+ A+ +N
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS--YGFVHYFDRRCASMAIMTLN 121
Query: 243 GRIVGTKPLYVALAQ---RKEDRKAH 311
GR + +P+ V A ++ED +H
Sbjct: 122 GRHIFGQPMKVNWAYATGQREDTSSH 147
Score = 32.7 bits (71), Expect = 0.17
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 233
Q +YV NL + L + F G +V ++ R KGFGFV +++ +EA A+
Sbjct: 271 QFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQ--RDKGFGFVRYNTHDEAALAIQ 328
Query: 234 EMNGR 248
N +
Sbjct: 329 MGNAQ 333
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +3
Query: 51 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATK 224
Y NLY+ L ++D+ L F+ FG I AKV+ + G SKG+GFV ++ + A
Sbjct: 477 YDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANT 536
Query: 225 AVTEMNGRIVGTKPLYVALA 284
AV MNG + L V +A
Sbjct: 537 AVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +3
Query: 51 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATK 224
Y NLY+ L ++D+ L F+ FG I AKV+ + G SKG+GFV ++ + A
Sbjct: 477 YDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANT 536
Query: 225 AVTEMNGRIVGTKPLYVALA 284
AV MNG + L V +A
Sbjct: 537 AVQAMNGYRFEGRTLAVRIA 556
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +3
Query: 3 RRSSTREQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRS 176
R + R+ S+ +R+ ++ V NL + L + F PFG +T V ++ S
Sbjct: 155 REGADRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMS 214
Query: 177 KGFGFVCFSSPEEATKAVTEMNG 245
+GFGFV F S E+A +A+ ++NG
Sbjct: 215 RGFGFVSFVSREDAQRAINKLNG 237
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +3
Query: 3 RRSSTREQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRS 176
R + R + S+ R ++ V NL + + L + F PFG +T V ++ G S
Sbjct: 194 RAGADRSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVS 253
Query: 177 KGFGFVCFSSPEEATKAVTEMNG 245
+GFGFV F S E+A +A+ ++NG
Sbjct: 254 RGFGFVNFVSREDAQRAINKLNG 276
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 236
N++V +L + D L F+ + T + A+VM + GRS+GFGFV F + ++A A+ E
Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE 199
Query: 237 MNGRIVGTKPL 269
+ G+ +G++ +
Sbjct: 200 ITGKWLGSRQI 210
Score = 37.5 bits (83), Expect = 0.006
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 242
++YV N+ + + L++ FA G + S K++ ++ S +GFV + A A+ +N
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS--YGFVHYFDRRSAGLAILSLN 112
Query: 243 GRIVGTKPLYVALAQ---RKEDRKAH 311
GR + +P+ V A ++ED +H
Sbjct: 113 GRHLFGQPIKVNWAYASGQREDTSSH 138
Score = 33.1 bits (72), Expect = 0.13
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 230
Q +YV NL + L + F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 258 QYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHVEAALAI 314
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.6 bits (113), Expect = 1e-06
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
++V L + + +L F +G IT ++M+ + GR +GFGF+ F+ A A+ M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 240 NGRIVGTKPLYVALAQRK 293
+GR +G K + V A+ K
Sbjct: 74 HGRELGNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.6 bits (113), Expect = 1e-06
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
++V L + + +L F +G IT ++M+ + GR +GFGF+ F+ A A+ M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 240 NGRIVGTKPLYVALAQRK 293
+GR +G K + V A+ K
Sbjct: 74 HGRELGNKVISVNKAEPK 91
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEM 239
+YV NL T+ E L F+ G + SAKV G SK GFGFV FSS E+ A+ +
Sbjct: 179 VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVAL 238
Query: 240 NGRIV 254
N ++
Sbjct: 239 NNSLL 243
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
+Y+ N+ T+ +E+L K G + +VM + GRS+ FGF S E+A V ++
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 240 NGRIVGTKPLYVALAQR 290
NG V + + V + ++
Sbjct: 138 NGNTVEGREIKVNITEK 154
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
L++ L ++D++ L+ F+ FG + ++ + GRS+GFGFV F+ +A A M
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 240 NGRIVGTKPLYVALA 284
+G+ + +PL ++ A
Sbjct: 103 DGKGLLGRPLRISFA 117
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +3
Query: 69 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 242
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 243 G 245
G
Sbjct: 69 G 69
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 48.8 bits (111), Expect = 2e-06
Identities = 27/80 (33%), Positives = 41/80 (51%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
LYVKN+ + E+L++ F G +T G + FGFV ++ A KAV +
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTER 353
Query: 246 RIVGTKPLYVALAQRKEDRK 305
V +PL V LA+ + +RK
Sbjct: 354 YEVNGQPLEVVLAKPQAERK 373
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 230
G +++ L + +E LR G I ++M + G SKG+ FV F + + A KA+
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 231 TEMNGRIVGTKPLYVALAQRK 293
E++ + K + +L++ K
Sbjct: 175 EELHSKEFKGKTIRCSLSETK 195
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 48.8 bits (111), Expect = 2e-06
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +3
Query: 69 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 242
++ L T D LR F +G + AKV+L+ GRS+GFGF+ F + +A+ MN
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Query: 243 GRIVGTKPLYVALAQ 287
G + + + V AQ
Sbjct: 70 GMDLDGRTITVDKAQ 84
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 239
L+VK + + +E L + F+ +G + V+++ R KGF +V FSS EEA KA+ E+
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 240 NGRIV 254
N ++V
Sbjct: 83 NAQLV 87
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +3
Query: 42 LTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEA 218
+T G ++YV L I +E +R+ F+ +G++ + K++ + R K +GFV FS+ A
Sbjct: 1 MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60
Query: 219 TKAVTEMNGRIVGTKPLYV 275
A+ +M+G+ +G + + V
Sbjct: 61 DDAIEDMDGKSIGGRAVRV 79
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/63 (36%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
++V + + D+ LR+ F+ +G + AK+++ E GRS+GF FV F+S EEA+ A+ ++
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QL 94
Query: 240 NGR 248
+G+
Sbjct: 95 DGQ 97
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 48.0 bits (109), Expect = 4e-06
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 239
LYV L ++ LR F FG + ++++ R KGF F+ + + EEA KA+ M
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 240 NGRIVGTKPLYVALAQRKED 299
+G+ + + ++V A+ + D
Sbjct: 139 HGKFLDGRVIFVEEAKTRSD 158
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 47.6 bits (108), Expect = 6e-06
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
+Y NL + + L+ F + AKV+ E GRS+GFGF+ F S E A+ M
Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATM 280
Query: 240 NGRIVGTKPLYVALAQRKE 296
NG V + L + LA +E
Sbjct: 281 NGVEVEGRALRLNLASERE 299
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 239
LYV NL TI L + F GT+ +++ + RS+GFGFV S EEA +A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 240 NGRIVGTKPLYV 275
N +G + + V
Sbjct: 178 NSSQIGGRTVKV 189
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 47.6 bits (108), Expect = 6e-06
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
L++ L ++ LR F FG + K++++ RSKG+ F+ +++ E A A+ EM
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343
Query: 240 NGRIVGTKPLYVALAQRKEDRK 305
NG+I+ + V +A+ K R+
Sbjct: 344 NGKIINGWMIVVDVAKTKPFRQ 365
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 47.2 bits (107), Expect = 8e-06
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTE 236
L++ + ++ERL++ F+ FG + A V+L+D GR++GFGFV F+ P A +TE
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 237 ---MNGRIVGTK 263
++GR+V K
Sbjct: 67 KHNIDGRLVEAK 78
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 233
++V L ++ + + F FGT T VM + R +GFGF+ + S E K +
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 234 --EMNGRIVGTK 263
E+NG++V K
Sbjct: 170 FHELNGKMVEVK 181
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 47.2 bits (107), Expect = 8e-06
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTE 236
L++ + ++ERL++ F+ FG + A V+L+D GR++GFGFV F+ P A +TE
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 237 ---MNGRIVGTK 263
++GR+V K
Sbjct: 67 KHNIDGRLVEAK 78
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 233
++V L ++ + + F FGT T VM + R +GFGF+ + S E K +
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 234 --EMNGRIVGTK 263
E+NG++V K
Sbjct: 170 FHELNGKMVEVK 181
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 239
L+V + D+++LR+ F +G ++ A VM + GR +GFGFV FS P + + E
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 240 NGRIVGTKPLYVALAQRKEDRK 305
+ + T+ + V A +E+++
Sbjct: 68 HS--IDTREVDVKRAMSREEQQ 87
Score = 41.5 bits (93), Expect = 4e-04
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 239
++V L T+ DE R+ F +G +T +M + R +GFGFV F S E+A +V
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS-EDAVDSVLHK 170
Query: 240 NGRIVGTKPLYVALAQRKE 296
+ K + V A K+
Sbjct: 171 TFHDLSGKQVEVKRALPKD 189
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +3
Query: 69 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 242
+V L DD L FA +G + +K++ E GRS+GFGFV F + A+ MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 243 GRIVGTKPLYVALAQRK 293
G+ + + + V AQ +
Sbjct: 71 GQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +3
Query: 69 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 242
+V L DD L FA +G + +K++ E GRS+GFGFV F + A+ MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 243 GRIVGTKPLYVALAQRK 293
G+ + + + V AQ +
Sbjct: 71 GQDLDGRSITVNEAQSR 87
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +3
Query: 30 KSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFS 203
K+E + + + LYV N+ + D +L F PFGT+ S +V + G S+G G+V
Sbjct: 98 KAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMG 157
Query: 204 SPEEATKAVTEMNGRIVGTKPLYV 275
S A A+ ++G VG + + V
Sbjct: 158 SINSAKIAIASLDGTEVGGREMRV 181
Score = 40.3 bits (90), Expect = 9e-04
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 239
+YV NL + LR F+ FGTI S +V+ + GR++ F F+ F+S EE A++
Sbjct: 214 VYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-F 272
Query: 240 NG 245
NG
Sbjct: 273 NG 274
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 45.6 bits (103), Expect = 2e-05
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-----EDGRSKGFGFVCFSSPEEA 218
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 177 QTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADG 236
Query: 219 TKAVTEMNGRIV 254
A EM G IV
Sbjct: 237 QAAKDEMQGIIV 248
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 45.6 bits (103), Expect = 2e-05
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
LYV NLD ++ + + F+ FG + V+ + +S+G FV + S E+A KA M
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 240 NGRIVGTKPLYVALA 284
+ +I+ + L V++A
Sbjct: 119 DAKILNGRKLTVSIA 133
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 236
L++ + D+ERL++ F +G + A +M + GR++GFGF+ F+ P A + + +
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 76
Query: 237 --MNGRIVGTK 263
++GR V K
Sbjct: 77 HIIDGRTVEAK 87
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KA 227
++V L +I + + F FGTI VM + R +GFGF+ F S E K
Sbjct: 124 IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKT 183
Query: 228 VTEMNGRIVGTK 263
E+NG++V K
Sbjct: 184 FHELNGKMVEVK 195
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 242
LYV NL + ++ LRK F FG++ +V E G KGFGFV F+ E+A A+ +N
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NLN 345
Query: 243 GRI 251
G++
Sbjct: 346 GQL 348
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 45.2 bits (102), Expect = 3e-05
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEM 239
LYV L D +++ L F PFG I K L+ K FGFV F E+A+ A+ M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 240 NG 245
+G
Sbjct: 75 DG 76
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 44.8 bits (101), Expect = 4e-05
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Frame = +3
Query: 3 RRSSTREQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSK 179
++S+ ++ T+ L+ NL I + F G + ++ +DG K
Sbjct: 365 QKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFK 424
Query: 180 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 293
G+G + F+SPEEA KA+ EMNG+++ + + + LA +
Sbjct: 425 GYGHIEFASPEEAQKAL-EMNGKLLLGRDVRLDLANER 461
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 44.0 bits (99), Expect = 7e-05
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-----EDGRSKGFGFVCFSSPEEA 218
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 185 QTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFMNRADG 244
Query: 219 TKAVTEMNGRIV 254
A +M G IV
Sbjct: 245 EAAKEKMQGIIV 256
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 44.0 bits (99), Expect = 7e-05
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +3
Query: 87 DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 260
+T DE +R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G
Sbjct: 27 ETPTDE-MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
Query: 261 K 263
K
Sbjct: 86 K 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 44.0 bits (99), Expect = 7e-05
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +3
Query: 87 DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 260
+T DE +R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G
Sbjct: 27 ETPTDE-MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
Query: 261 K 263
K
Sbjct: 86 K 86
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 43.6 bits (98), Expect = 9e-05
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 236
L++ + D+ERLR F+ +G + A +M + GR++GFGF+ F+ P + + + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 237 --MNGRIVGTK 263
++GR V K
Sbjct: 68 HIIDGRTVEAK 78
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KA 227
++V L +I +E + F FGTI VM + R +GFGF+ F S + K
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 228 VTEMNGRIVGTK 263
E+NG++V K
Sbjct: 172 FHELNGKLVEVK 183
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 43.6 bits (98), Expect = 9e-05
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 236
L++ + D+ERLR F+ +G + A +M + GR++GFGF+ F+ P + + + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 237 --MNGRIVGTK 263
++GR V K
Sbjct: 68 HIIDGRTVEAK 78
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KA 227
++V L +I +E + F FGTI VM + R +GFGF+ F S + K
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 228 VTEMNGRIVGTK 263
E+NG++V K
Sbjct: 172 FHELNGKLVEVK 183
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 43.6 bits (98), Expect = 9e-05
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 236
L++ + D+ERLR F+ +G + A +M + GR++GFGF+ F+ P + + + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 237 --MNGRIVGTK 263
++GR V K
Sbjct: 68 HIIDGRTVEAK 78
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KA 227
++V L +I +E + F FGTI VM + R +GFGF+ F S + K
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 228 VTEMNGRIVGTK 263
E+NG++V K
Sbjct: 172 FHELNGKLVEVK 183
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 43.6 bits (98), Expect = 9e-05
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 236
+L V+NL E LRK F FG + + + G +GFGFV F P +A A
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 237 MNGRIVGTKPLYVALAQRKEDRK 305
M+G ++ + L V A+ E+RK
Sbjct: 97 MDGYLLLGRELTVVFAE--ENRK 117
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 43.6 bits (98), Expect = 9e-05
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +3
Query: 87 DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 260
+T DE +R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G
Sbjct: 27 ETPTDE-MRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGR 85
Query: 261 K 263
K
Sbjct: 86 K 86
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 233
++V L ++ + +K FA FG IT VM + R +GFGF+ + S E K +
Sbjct: 35 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 94
Query: 234 --EMNGRIVGTK 263
E+NG++V K
Sbjct: 95 FHELNGKMVEVK 106
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 233
++V L ++ + +K FA FG IT VM + R +GFGF+ + S E K +
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 234 --EMNGRIVGTK 263
E+NG++V K
Sbjct: 168 FHELNGKMVEVK 179
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 227
+ L++ + ++RLR F FG + A +M + GR++GFGFV F+ P A +
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 228 VT---EMNGRIVGTK 263
V ++G+IV K
Sbjct: 64 VLLKHIIDGKIVEAK 78
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 233
++V L ++ + +K FA FG IT VM + R +GFGF+ + S E K +
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 234 --EMNGRIVGTK 263
E+NG++V K
Sbjct: 168 FHELNGKMVEVK 179
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 227
+ L++ + ++RLR F FG + A +M + GR++GFGFV F+ P A +
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 228 VT---EMNGRIVGTK 263
V ++G+IV K
Sbjct: 64 VLLKHIIDGKIVEAK 78
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 236
+L V+NL E LR+ F FG + + + G +GFGF+ F P +A +A +
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97
Query: 237 MNGRIVGTKPLYVALAQRKEDRK 305
M+G ++ + L V A+ E+RK
Sbjct: 98 MDGYLLLGRELTVVFAE--ENRK 118
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 42.7 bits (96), Expect = 2e-04
Identities = 31/76 (40%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 239
+YV L E L F FG I AKV+ + RSKGFGFV F E AT+A
Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENP 70
Query: 240 N----GRIVGTKPLYV 275
N GR V K Y+
Sbjct: 71 NHTIDGRTVNCKLAYL 86
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 239
++V L + +R+ F FG I A V+ + GRSKG+GFV F E A +A M
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83
Query: 240 NGRIVGTK 263
N I G +
Sbjct: 84 NPVIDGRR 91
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Frame = +3
Query: 69 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA----- 227
+V+ LD D++ L F+ FG + +K++ + G+S+ FGFV F + T A
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 228 VTEMNGRIVGTKPLYVALA-QRKEDRKA 308
V E + V + V +A QR+++R A
Sbjct: 70 VEESRSKCVNVGSITVEVARQRRKNRSA 97
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 69 YVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 242
+V L D++ + + F FG + +K+++ E GRSKGF FV F + A+ MN
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMN 106
Query: 243 GR 248
G+
Sbjct: 107 GQ 108
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 239
++V L E LR+ F +G I A V+ + GRSKG+GFV F PE A +A +
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADP 85
Query: 240 NGRIVGTK 263
I G +
Sbjct: 86 TPIIDGRR 93
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 239
++V L E LR+ F +G I A V+ + GRSKG+GFV F PE A +A +
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDP 85
Query: 240 NGRIVGTK 263
I G +
Sbjct: 86 TPIIDGRR 93
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
LYV NL + + +LR+ F FG + ++ L E G+ KGFGF+ F E + A +
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIAL 326
Query: 240 NGRI 251
NG++
Sbjct: 327 NGKL 330
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 42.3 bits (95), Expect = 2e-04
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +3
Query: 66 LYVKNLDDT-IDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 239
+ VKNL + +ERLR F+ G I K+ + DG+S+ F ++ F + +EA A+T +
Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYV 63
Query: 240 NGRIVGTKPLYVALA 284
N + T + V +A
Sbjct: 64 NKCFIDTYRISVEVA 78
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEM 239
L V+ LD+ D+E LR EF+ I +++ + S+GF FV F S E+ATKA+
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519
Query: 240 N 242
N
Sbjct: 520 N 520
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 41.9 bits (94), Expect = 3e-04
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
L V + ID + L+ + FG + VM + GRS+GFG+V F+S E+A A+
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL--K 62
Query: 240 NGRIVGTKPLYVALAQRKEDRK 305
+G + L V +A KE+ +
Sbjct: 63 GEHFLGNRILEVKVATPKEEMR 84
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 41.9 bits (94), Expect = 3e-04
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +3
Query: 6 RSSTREQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR--SK 179
RS +R + +SE G LYV L + D+ L FA G + S +++E S+
Sbjct: 56 RSRSRSRGRSE--VENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSR 113
Query: 180 GFGFVCFSSPEEATKAVTEMNGRIV 254
GF FV SS ++A + + +N ++
Sbjct: 114 GFAFVTMSSLKDAERCIKYLNQSVL 138
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 41.9 bits (94), Expect = 3e-04
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Frame = +3
Query: 27 LKSERLTRYQGVN---LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGF 191
L+S RLT ++ L+++ L E LR F+ +G + A V+L+ G+SKG+GF
Sbjct: 61 LESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGF 120
Query: 192 VCFSSPEEATKAVTEMNGRIVG 257
V F + A A+ E + +I G
Sbjct: 121 VTFMHVDGALLALKEPSKKIDG 142
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 41.9 bits (94), Expect = 3e-04
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Frame = +3
Query: 27 LKSERLTRYQGVN---LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGF 191
L+S RLT ++ L+++ L E LR F+ +G + A V+L+ G+SKG+GF
Sbjct: 61 LESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGF 120
Query: 192 VCFSSPEEATKAVTEMNGRIVG 257
V F + A A+ E + +I G
Sbjct: 121 VTFMHVDGALLALKEPSKKIDG 142
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 108 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 236
LR F FG I A V+ + GRSKG+GFV F PE A KA +
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 108 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 236
LR F FG I A V+ + GRSKG+GFV F PE A KA +
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAV 230
G +LYV L + + L FA G +T ++L+ S+GFGF+ S +A + +
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 133
Query: 231 TEMNGRIVGTKPLYVALAQRKEDR 302
++ ++ + + V A+R+ R
Sbjct: 134 RSLDHSVLQGRVITVEKARRRRGR 157
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 236
N++V+ L E L+ F +G IT V+++ GR+KGFGFV F + + A A+
Sbjct: 164 NIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKN 223
Query: 237 MNGRI 251
R+
Sbjct: 224 PEKRM 228
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 41.1 bits (92), Expect = 5e-04
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 239
++V L ++++ L+ F +G I ++M + GRS+GFGFV F + + + ++
Sbjct: 159 IFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDG 218
Query: 240 NGRIVGTKPLYVALAQRK 293
+G K + + A+ K
Sbjct: 219 KVHELGDKQVEIKRAEPK 236
Score = 30.3 bits (65), Expect = 0.93
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 236
L+V + E F FG + + +M + G +GFGFV F+ A K + E
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 40.7 bits (91), Expect = 7e-04
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Frame = +3
Query: 51 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATK 224
Y L+V + +E L++ F+ +G + A V E G+ +GFGFV F++ + K
Sbjct: 3 YDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVK 62
Query: 225 AVTEMNGRIVGTKPLYVALAQRKED 299
A+ + + I+G KP+ V A RK +
Sbjct: 63 ALRDTH-FILG-KPVDVRKAIRKHE 85
Score = 36.7 bits (81), Expect = 0.011
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG---RSKGFGFVCFSSPEEATKAVTE 236
++V L +E + F FG T VM DG R +GFGFV + S E++ + V +
Sbjct: 122 IFVGGLSSNTTEEEFKSYFERFGRTTDVVVM-HDGVTNRPRGFGFVTYDS-EDSVEVVMQ 179
Query: 237 MNGRIVGTKPLYVALAQRKE 296
N + K + V A KE
Sbjct: 180 SNFHELSDKRVEVKRAIPKE 199
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 40.3 bits (90), Expect = 9e-04
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 233
G LY+ NLD + +E +++ FA G + V + GRSKG V +S +A AV
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 144
Query: 234 EMNGRIVGTKPLYVAL 281
+ N + KP+ + +
Sbjct: 145 KYNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 40.3 bits (90), Expect = 9e-04
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 233
G LY+ NLD + +E +++ FA G + V + GRSKG V +S +A AV
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 80
Query: 234 EMNGRIVGTKPLYVAL 281
+ N + KP+ + +
Sbjct: 81 KYNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 40.3 bits (90), Expect = 9e-04
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 233
G LY+ NLD + +E +++ FA G + V + GRSKG V +S +A AV
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 146
Query: 234 EMNGRIVGTKPLYVAL 281
+ N + KP+ + +
Sbjct: 147 KYNDVQLDGKPMKIEI 162
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 40.3 bits (90), Expect = 9e-04
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
L ++NL LR F FG + + G +GFGFV + E+A +A+ M
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 240 NGRIVGTKPLYVALAQRKEDRK 305
N +++G + + + A+ E+RK
Sbjct: 109 NHKVIGGREIAIVFAE--ENRK 128
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 40.3 bits (90), Expect = 9e-04
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
+YV NLD + + L EF FG + S V R G+ F+ F P +A A+ ++G
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVA---RRPPGYAFLDFEDPRDARDAIRALDG 60
Query: 246 R 248
+
Sbjct: 61 K 61
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 40.3 bits (90), Expect = 9e-04
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +3
Query: 165 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 308
DG+S+ FGF+ F S +EA +A+ N +GT + V +A + D A
Sbjct: 5 DGKSRQFGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHKVGDENA 52
Score = 35.9 bits (79), Expect = 0.019
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKA 227
L+VKN+ LR+ F+PFG I S ++ ++ G+ G+ FV F + +EA A
Sbjct: 671 LHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNA 725
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 40.3 bits (90), Expect = 9e-04
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
++V + T+ ++ L+ FA +G + +V+ E RS+GFGFV F S E + +++
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 240 N 242
N
Sbjct: 171 N 171
Score = 35.9 bits (79), Expect = 0.019
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 236
+++ L + K F +G IT + +M + G+ +GFGF+ F+ P K + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 237 --MNGRIVGTK 263
+NG+ V K
Sbjct: 81 HVINGKQVEIK 91
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 40.3 bits (90), Expect = 9e-04
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
++V + T+ ++ L+ FA +G + +V+ E RS+GFGFV F S E + +++
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 240 N 242
N
Sbjct: 171 N 171
Score = 35.9 bits (79), Expect = 0.019
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 236
+++ L + K F +G IT + +M + G+ +GFGF+ F+ P K + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 237 --MNGRIVGTK 263
+NG+ V K
Sbjct: 81 HVINGKQVEIK 91
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 40.3 bits (90), Expect = 9e-04
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 209
L++ + D+ LR+ F+ FG + VM E GR +GFGFV FS P
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57
Score = 35.9 bits (79), Expect = 0.019
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KA 227
++V L + + R F +G ++ A +M++ R +GFGFV F S + K
Sbjct: 112 IFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKT 171
Query: 228 VTEMNGRIVGTK 263
++NG+ V K
Sbjct: 172 FHDLNGKQVEVK 183
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 40.3 bits (90), Expect = 9e-04
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 239
L+V L+ +DE L F+ FGT+ SA V+ + G S + F+ F + E +A +M
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 240 NGRIVGTKPLYVALAQ 287
+ ++ + ++V +Q
Sbjct: 305 DNALIDDRRIHVDFSQ 320
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 39.9 bits (89), Expect = 0.001
Identities = 28/99 (28%), Positives = 51/99 (51%)
Frame = +3
Query: 9 SSTREQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFG 188
S+ E + E L+R L+V+N+D +I+D L F FG + + + G+++GF
Sbjct: 198 STVAEHPQGEILSRI----LFVRNVDSSIEDCELGVLFKQFGDV---RALHTAGKNRGFI 250
Query: 189 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 305
V + A KA ++GR++ + L + + KE+ K
Sbjct: 251 MVSYYDIRAAQKAARALHGRLLRGRKLDIRYSIPKENPK 289
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAV 230
G LYV L + D+ L FA G + S +++E S+GF FV SS ++A + +
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 129
Query: 231 TEMNGRIV 254
+N ++
Sbjct: 130 KYLNQSVL 137
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
+YV NLD + + L EF FG I S V R G+ F+ F +A A+ E++G
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWVA---RRPPGYAFLDFEDSRDARDAIREVDG 60
Query: 246 R 248
+
Sbjct: 61 K 61
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 102 ERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 263
E ++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 102 ERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 263
E ++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 102 ERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 263
E ++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPE 212
++V + ++DD+ ++ F FG + ++M + GRS+GFGFV + S +
Sbjct: 132 IFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESED 182
Score = 31.5 bits (68), Expect = 0.40
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
++V L K F +G IT + +M + G+ +GFGFV ++ K + +
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD- 102
Query: 240 NGRIVG 257
N I+G
Sbjct: 103 NHIIIG 108
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 242
L+V +L+ ++ + + F FG + +M ++ R S+G GFV +SS E A A+ +N
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272
Query: 243 GRIV---GTKPLYVALAQRKEDR 302
G +PL V A+ K +
Sbjct: 273 GTYTMRGCNQPLIVRFAEPKRPK 295
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 242
L+V +L+ ++ + + F FG + +M ++ R S+G GFV +SS E A A+ +N
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272
Query: 243 GRIV---GTKPLYVALAQRKEDR 302
G +PL V A+ K +
Sbjct: 273 GTYTMRGCNQPLIVRFAEPKRPK 295
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
L+ NL I+ + F G + + +DG +GFG V F+S EEA KA+ E
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL-EF 357
Query: 240 NGRIVGTKPLYVALAQRKEDR 302
+GR + + + + +AQ + +R
Sbjct: 358 HGRPLLGREIRLDIAQERGER 378
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 242
L+V NL + F G + S ++M+ +G+ G+GFV F+S +E KA+ N
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKN 305
Query: 243 GRIVGTKPLYVALAQ 287
G + +++ +A+
Sbjct: 306 GEYLHDHKIFIDVAK 320
Score = 35.9 bits (79), Expect = 0.019
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 242
L+V NL + K F + ++++ G G GFV F+S EA KA+ +MN
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550
Query: 243 GRIVGTKPLYVALAQ 287
G + ++ +++ + +
Sbjct: 551 GENLRSREIFLDVVE 565
Score = 33.9 bits (74), Expect = 0.075
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 242
L+V NL + F G + ++++ G+ G GFV F+S EA +A+ + N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 243 GRIVGTKPLYVALAQRK 293
G + +++ +A +K
Sbjct: 189 GECLDNNKIFLDVANKK 205
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG--FGFVCFSSPEEATKA 227
+G ++YV++L + + L EF FG IT+ + + + R G +GFV F + A +A
Sbjct: 317 EGTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAAHRA 376
Query: 228 VTEMNGRIVGTK 263
+ +I G +
Sbjct: 377 IEASPVKIGGLR 388
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
+YV ++D + +E L F G + +V + F F+ F++ EE +A M+G
Sbjct: 171 VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTN-EEGARAALSMSG 229
Query: 246 RIVGTKPLYV 275
++G PL V
Sbjct: 230 TVLGFYPLKV 239
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +3
Query: 45 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEA 218
++ Q L ++NL ++ F+ G + + E G KGF FV F+ ++A
Sbjct: 326 SKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDA 385
Query: 219 TKAVTEMNGRIVGTKPLYVALAQRK 293
A+ + NG + G +P+ V A K
Sbjct: 386 ANAIKKFNGHMFGKRPIAVDWAVPK 410
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/75 (28%), Positives = 38/75 (50%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 242
+L + NL+ T+ LR F +G + K + E + FV F +A KA+ MN
Sbjct: 184 SLVIMNLEPTVSSSTLRHIFQVYGEV---KQVRETPCKREQRFVEFFDVRDAAKALRVMN 240
Query: 243 GRIVGTKPLYVALAQ 287
G+++ KP+ + ++
Sbjct: 241 GKVISGKPMVIQFSR 255
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 236
+L V N+ + L FA +G + + + G S+GF FV + +EA KAV
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 237 MNGRIVGTKPLYVALAQ 287
++GR+V + + V A+
Sbjct: 77 LDGRVVDGREITVQFAK 93
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 236
+L V N+ + L FA +G + + + G S+GF FV + +EA KAV
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 237 MNGRIVGTKPLYVALAQ 287
++GR+V + + V A+
Sbjct: 77 LDGRVVDGREITVQFAK 93
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 37.1 bits (82), Expect = 0.008
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCF--SSPEEATKAV 230
GV L+V L +++ + L K F+P GT+ + + + GRS F ++ F SS TK
Sbjct: 9 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRS--FAYIDFSPSSTNSLTKLF 66
Query: 231 TEMNG 245
+ NG
Sbjct: 67 STYNG 71
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 37.1 bits (82), Expect = 0.008
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 233
G LY+ NLD + +E +++ F+ G + + + GRSKG V FS +A AV
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVK 166
Query: 234 EMN 242
N
Sbjct: 167 RYN 169
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 37.1 bits (82), Expect = 0.008
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 230
++V NL + LR+ F FG + A V+ E GRSKG+GF+ F +A+
Sbjct: 14 IFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRAL 70
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 37.1 bits (82), Expect = 0.008
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 236
N++V+ E L+ F +G I V+++ GR KG+GFV F + + A +A+
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKR 468
Query: 237 MNGRI 251
R+
Sbjct: 469 PEKRM 473
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 36.7 bits (81), Expect = 0.011
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
LY+ + + + F+ FGT+ +V + G+SK FGF+ F PE A A M
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 240 N 242
N
Sbjct: 122 N 122
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 36.7 bits (81), Expect = 0.011
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCF 200
+G NL++ N+ D+ L F FG + SAKV ++ G SK FG + F
Sbjct: 346 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
Score = 35.9 bits (79), Expect = 0.019
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 242
L+V L + + ++ F+ +GTI +++ SKG F+ + + E+A A+ +N
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESIN 167
Query: 243 G--RIVG-TKPLYVALAQRKEDR 302
G ++ G T PL V A + +R
Sbjct: 168 GKHKMEGSTVPLVVKWADTERER 190
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 36.7 bits (81), Expect = 0.011
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAV 230
G +LYV L + + L FA G +T ++L+ S+GFGF+ S +A + +
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 103
Query: 231 TEMNGRIV 254
++ ++
Sbjct: 104 RSLDHSVL 111
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 36.3 bits (80), Expect = 0.014
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
LYV+NL I E + F +G I ++ D +KG FV + +A AV ++G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGC-DKATKGTAFVVYEDIYDAKNAVDHLSG 79
Query: 246 RIVGTKPLYVALAQRKEDRK 305
V + L V Q + K
Sbjct: 80 FNVANRYLIVLYYQHAKMSK 99
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 35.1 bits (77), Expect = 0.033
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV--- 230
++YV N+D E ++ F GT+ ++++ G+ KGF +V F E +A+
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLN 149
Query: 231 -TEMNGRIVGTKP 266
+E++GR + P
Sbjct: 150 ESELHGRQLKVSP 162
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 35.1 bits (77), Expect = 0.033
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV--- 230
++YV N+D E ++ F GT+ ++++ G+ KGF +V F E +A+
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLN 149
Query: 231 -TEMNGRIVGTKP 266
+E++GR + P
Sbjct: 150 ESELHGRQLKVSP 162
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 35.1 bits (77), Expect = 0.033
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 227
+G + V + + +E + F FG I + + L+ G KG+ + + EEA A
Sbjct: 93 EGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSA 152
Query: 228 VTEMNG 245
++ MNG
Sbjct: 153 ISAMNG 158
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 35.1 bits (77), Expect = 0.033
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Frame = +3
Query: 81 LDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFG-------FVCFSSPEEATKAVTEM 239
+DD ++DE + E +GT+T +V++ + F FV FS PEE TKA+ ++
Sbjct: 296 VDDELEDE-VGGECGKYGTVT--RVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDL 352
Query: 240 NGRIVGTKPLYVALAQRKEDRKAHL 314
+GR G + + ++ K L
Sbjct: 353 DGRYFGGRTVRATFYDEEKFSKNEL 377
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 34.7 bits (76), Expect = 0.043
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 66 LYVKNLDDTIDDER-LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 242
L+V N D E + K F P+G +T+ ++ + F FV F + E+ATKA+
Sbjct: 95 LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIR------RNFSFVQFETQEDATKALEATQ 148
Query: 243 GRIVGTKPLYVALAQRKEDRK 305
+ + + V A + +D +
Sbjct: 149 RSKILDRVVSVEYALKDDDER 169
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 34.3 bits (75), Expect = 0.057
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
+YV ++D ++ +E L F+ G + ++ + F FV FS + A A++ + G
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALS-LGG 188
Query: 246 RIVGTKPLYV 275
++G P+ V
Sbjct: 189 TMIGYYPVRV 198
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 33.9 bits (74), Expect = 0.075
Identities = 19/78 (24%), Positives = 39/78 (50%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
L+V+N++ +++D L F PFG I S + +S+GF + + A A+ +
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGEIRS---LYTACKSRGFVMISYYDIRAAHAAMRALQN 243
Query: 246 RIVGTKPLYVALAQRKED 299
++ + L + + KE+
Sbjct: 244 TLLRKRTLDIHFSIPKEN 261
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 33.9 bits (74), Expect = 0.075
Identities = 19/78 (24%), Positives = 39/78 (50%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
L+V+N++ +++D L F PFG I S + +S+GF + + A A+ +
Sbjct: 200 LFVRNINSSVEDSELSALFEPFGEIRS---LYTACKSRGFVMISYYDIRAAHAAMRALQN 256
Query: 246 RIVGTKPLYVALAQRKED 299
++ + L + + KE+
Sbjct: 257 TLLRKRTLDIHFSIPKEN 274
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 33.9 bits (74), Expect = 0.075
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 239
++V L E L F +G I V+++ G++KGFGFV F + + A +A+ E
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEP 165
Query: 240 NGRIV 254
RI+
Sbjct: 166 KKRIL 170
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 33.9 bits (74), Expect = 0.075
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 239
++V L E L F +G I V+++ G++KGFGFV F + + A +A+ E
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEP 165
Query: 240 NGRIV 254
RI+
Sbjct: 166 KKRIL 170
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 33.9 bits (74), Expect = 0.075
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Frame = +3
Query: 60 VNLYVKNL-DDTIDDERLRKEFAPFGTITSAKV-----MLEDGRSKGFGFVCFSSPEEAT 221
V LY+KNL D + D+ + F + AK ++++GR +G F+ F S E A
Sbjct: 352 VVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQEGRMRGQAFLTFPSVEVAH 411
Query: 222 KAVTEMNGRIVGTKPLYV 275
+A+ +NG + KP+ +
Sbjct: 412 RALNLVNGFVFKGKPMII 429
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.5 bits (73), Expect = 0.100
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Frame = +3
Query: 6 RSSTR---EQLKSERLTRYQGVNLYVKNLDDTI---DDERLRKEFAPFGTITSAKVMLED 167
RS T+ E+ ++ + Q ++V NL I + E ++F P + K E
Sbjct: 144 RSDTKPPEEETRNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEV 203
Query: 168 GRSKGFGFVCFSSPEEATKAV----TEMNGRIVGTK 263
++ GFGF+ +++ + A KAV E +GRI+ K
Sbjct: 204 EKNAGFGFIIYAAEKSAMKAVEFDGVEFHGRILTVK 239
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 33.5 bits (73), Expect = 0.100
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +3
Query: 9 SSTREQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV-MLEDGRSKGF 185
SS+ ++ E +++ L +N+ T E +R F +G++ ++ M + R++G
Sbjct: 80 SSSAPEVVEEEISK---TRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGL 136
Query: 186 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 302
F+ +SPEEA A+ + + L V A+ K+ +
Sbjct: 137 VFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKK 175
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.100
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
++V L E L + F +G I K + + G+SKG+GF+ + S A A+ +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 240 NGRIVGTKPLYVALAQR 290
+I G++ LA +
Sbjct: 202 QKKI-GSRMTACQLASK 217
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.100
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
++V L E L + F +G I K + + G+SKG+GF+ + S A A+ +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 240 NGRIVGTKPLYVALAQR 290
+I G++ LA +
Sbjct: 202 QKKI-GSRMTACQLASK 217
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.100
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
++V L E L + F +G I K + + G+SKG+GF+ + S A A+ +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 240 NGRIVGTKPLYVALAQR 290
+I G++ LA +
Sbjct: 202 QKKI-GSRMTACQLASK 217
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 33.5 bits (73), Expect = 0.100
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
+YV +LD + +E+L F G + ++ + F F+ F+ E A A+ ++G
Sbjct: 175 VYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTAL-NLSG 233
Query: 246 RIVGTKPLYV 275
++G P+ V
Sbjct: 234 TMLGFYPVKV 243
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
+YV ++D + +E+L F FG + ++ + F F+ F+ E + ++G
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTD-EVGARTALNLSG 210
Query: 246 RIVGTKPLYV 275
++G P+ V
Sbjct: 211 TMLGFYPVKV 220
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 239
+YV + + + L F+ +G I ++ + G +SKGF F+ + AV +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 240 NGRIV 254
NG +V
Sbjct: 98 NGALV 102
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 33.1 bits (72), Expect = 0.13
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +3
Query: 66 LYVKNLDDTIDDER-LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 242
L+V N D ER + + F P+G + + ++ + F FV F++ E+ATKA+ +
Sbjct: 71 LFVINFDPIRTRERDMERHFEPYGKVLNVRMR------RNFAFVQFATQEDATKALDSTH 124
Query: 243 GRIVGTKPLYVALAQR----KEDRKA 308
+ K + V A R +EDR A
Sbjct: 125 NSKLLDKVVSVEYALREAGEREDRYA 150
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 33.1 bits (72), Expect = 0.13
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +3
Query: 66 LYVKNLDDTIDDER-LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 242
L+V N D ER + + F P+G + + ++ + F FV F++ E+ATKA+ +
Sbjct: 97 LFVINFDPIRTRERDMERHFEPYGKVLNVRMR------RNFAFVQFATQEDATKALDSTH 150
Query: 243 GRIVGTKPLYVALAQR----KEDRKA 308
+ K + V A R +EDR A
Sbjct: 151 NSKLLDKVVSVEYALREAGEREDRYA 176
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 32.7 bits (71), Expect = 0.17
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV--- 230
++YV N+D E +++ F GT+ ++ + G+ KGF +V F E ++
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILN 163
Query: 231 -TEMNGR 248
+E++GR
Sbjct: 164 ESELHGR 170
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 32.7 bits (71), Expect = 0.17
Identities = 17/74 (22%), Positives = 39/74 (52%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
+YV ++D+ + +E+L F G + ++ + F F+ F+ E A A+ + +G
Sbjct: 139 VYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFTDAEGARSALRK-SG 197
Query: 246 RIVGTKPLYVALAQ 287
+ G+ P+ V +++
Sbjct: 198 TMFGSHPIRVFMSK 211
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 32.7 bits (71), Expect = 0.17
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
++V L + L F +G I K +++ G+SKG+GF+ F S A A+ +
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQP 189
Query: 240 NGRIVGTKPLYVALA 284
+I GT+ LA
Sbjct: 190 QKKI-GTRMTACQLA 203
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 32.7 bits (71), Expect = 0.17
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 242
+YV NLD + + L EF FG + + V R G+ F+ F +A A++ ++
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVA---RRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 32.7 bits (71), Expect = 0.17
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 242
+YV NLD + + L EF FG + + V R G+ F+ F +A A++ ++
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVA---RRPPGYAFLEFDDERDALDAISALD 59
>At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to
catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
thaliana]; identical to catalase 3 (SEN2) mRNA, partial
cds GI:3158369
Length = 427
Score = 32.7 bits (71), Expect = 0.17
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 473 WSCRSYLSHLSWSIVTWCW 417
W Y+SHL S++TWCW
Sbjct: 170 WRILDYMSHLPESLLTWCW 188
>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
thaliana]; identical to catalase 3 (SEN2) mRNA, partial
cds GI:3158369
Length = 492
Score = 32.7 bits (71), Expect = 0.17
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 473 WSCRSYLSHLSWSIVTWCW 417
W Y+SHL S++TWCW
Sbjct: 170 WRILDYMSHLPESLLTWCW 188
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 32.3 bits (70), Expect = 0.23
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 230
G L+V +L D L E +G + K E G+SKG+ V F P A+
Sbjct: 233 GAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACK 292
Query: 231 TEMNGRIVGTKPLYVALA 284
+NG +P V A
Sbjct: 293 DALNGYPFNGRPCVVEYA 310
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/72 (22%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 239
L+V L ++ LR+ + +G I + +++ + G S+G+GFV + + +E +A +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 240 NGRIVGTKPLYV 275
+ ++ + + V
Sbjct: 126 HHSLIDGREIIV 137
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 32.3 bits (70), Expect = 0.23
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 24 QLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCF 200
Q K E + + V NL ++ F + S ++++ +G+ G+GFV F
Sbjct: 146 QSKDETPPDFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEF 205
Query: 201 SSPEEATKAVTEMNG 245
+S A KA+ E NG
Sbjct: 206 ASAYGANKALEEKNG 220
Score = 31.1 bits (67), Expect = 0.53
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 120 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRI 251
F+ G I +++++ G G GFV F+S EA KA+ + G+I
Sbjct: 396 FSDVGEIVHIRIIVDHMGEPVGCGFVEFNSSNEAEKALQKKTGKI 440
>At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical to
gi:3928758 contains Pfam profile PF04055: radical SAM
domain protein
Length = 374
Score = 31.9 bits (69), Expect = 0.30
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 78 NLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS 176
N ++D R+ KE+AP GT+T VML G +
Sbjct: 251 NFKQSLDVLRMAKEYAPAGTLTKTSVMLGCGET 283
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEM 239
L+V +L +++ L++ F FG + ++ ++ + +G G+V F + +A KA M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 240 NGRIVGTK 263
+G + K
Sbjct: 160 DGAQIDGK 167
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEM 239
L+V +L +++ L++ F FG + ++ ++ + +G G+V F + +A KA M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 240 NGRIVGTK 263
+G + K
Sbjct: 160 DGAQIDGK 167
>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
protein
Length = 438
Score = 31.5 bits (68), Expect = 0.40
Identities = 22/62 (35%), Positives = 26/62 (41%)
Frame = +3
Query: 378 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASGHIANFMQPTYR 557
P S F P PPAP + AQ W QP RP Q++ G+ PTY
Sbjct: 208 PPAQSQFMPP--PPAPSHPSSAQTQSFPQYQQNWPPQPQARP--QSSGGY------PTYS 257
Query: 558 PA 563
PA
Sbjct: 258 PA 259
>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
protein
Length = 496
Score = 31.5 bits (68), Expect = 0.40
Identities = 22/62 (35%), Positives = 26/62 (41%)
Frame = +3
Query: 378 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASGHIANFMQPTYR 557
P S F P PPAP + AQ W QP RP Q++ G+ PTY
Sbjct: 266 PPAQSQFMPP--PPAPSHPSSAQTQSFPQYQQNWPPQPQARP--QSSGGY------PTYS 315
Query: 558 PA 563
PA
Sbjct: 316 PA 317
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 31.5 bits (68), Expect = 0.40
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 102 ERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 263
E + F +G I A ++ + RSKG+GFV F + AT+A + I G +
Sbjct: 31 EAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRR 86
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 31.5 bits (68), Expect = 0.40
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
++V L + ++R+ FG + ++ E G SKG+ F + P A +
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 240 NGRIVGTKPLYVALA 284
NG +G K L V A
Sbjct: 437 NGIKMGDKTLTVRRA 451
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 31.5 bits (68), Expect = 0.40
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 405 PSLPPAPRYYGPAQM-TQIRPTTPRWNAQPPVRPSTQAASGHIANFMQPT 551
P +PP P Y PAQ+ + + PT PP RP Q +ANF P+
Sbjct: 50 PLVPPGPPYAPPAQIPSSLLPT--NLPPPPPFRPGMQFTP--VANFQNPS 95
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 120 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 287
F G + S ++++ + + G+GFV F+SP A A+ + NG + +++ +A+
Sbjct: 702 FNDVGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAK 758
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 120 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 284
F G + S ++ + +G GFV F+S EA KA+ NG + L + +A
Sbjct: 584 FKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMKNGEYLCGNKLILGMA 639
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 31.1 bits (67), Expect = 0.53
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 48 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKA 227
R G ++Y+K L L EF FG I + + + + FGFV F S A
Sbjct: 308 RALGPSIYLKGLPLDATPALLENEFQKFGLIRTNGIQVRSQKGFCFGFVEFESASSMQSA 367
Query: 228 V 230
+
Sbjct: 368 I 368
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 31.1 bits (67), Expect = 0.53
Identities = 17/70 (24%), Positives = 37/70 (52%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
+YV ++D ++ +E L F+ G + ++ + F FV F+ + A +A++ + G
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALS-LGG 201
Query: 246 RIVGTKPLYV 275
++G P+ V
Sbjct: 202 TMLGFYPVRV 211
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 31.1 bits (67), Expect = 0.53
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 414 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRP 503
PP P Y P ++ ++P TP ++ PPV+P
Sbjct: 411 PPTPTYSPPIKLPPVKPPTPIYS--PPVKP 438
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 414 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRP 503
PP P Y P + ++P TP ++ PPV+P
Sbjct: 461 PPTPTYSPPIKPPPVKPPTPTYS--PPVQP 488
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 414 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRP 503
PP P Y P + ++P TP ++ PP++P
Sbjct: 511 PPTPTYSPPIKPPPVKPPTPTYS--PPIKP 538
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 414 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRP 503
PP P Y P + ++P TP ++ PPV+P
Sbjct: 327 PPTPTYSPPIKPPPVKPPTPIYS--PPVKP 354
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 30.3 bits (65), Expect = 0.93
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFG-----TITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 230
LY+KNL I ERL+ F G I AK ED R +GFV ++ +A+
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSR---YGFVHYAERTSVMRAL 326
Query: 231 TEMNGRIVGTKPLYVALAQRKEDRKAH 311
+ L LA+ + D+K +
Sbjct: 327 KNTERYEIDGHMLDCTLAKPQADQKTN 353
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR 173
LYV L+ I ++ + F +G + S +VM EDG+
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAEDGK 262
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 51 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 230
+Q NL+V +L + L + F +G I V S+GF F+ + EEA A
Sbjct: 15 FQSNNLWVGSLTPETTESDLTELFGRYGDIDRITVY----SSRGFAFIYYRHVEEAVAAK 70
Query: 231 TEMNG-RIVGTKPL 269
+ G + GT L
Sbjct: 71 EALQGANLNGTNEL 84
>At1g49620.1 68414.m05563 kip-related protein 7 (KRP7) /
cyclin-dependent kinase inhibitor 7 (ICK7) identical to
cyclin-dependent kinase inhibitor 7 (krp7) [Arabidopsis
thaliana] GI:14422297
Length = 195
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +3
Query: 24 QLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFS 203
+ K +R + Y+G N+ LDD DD+ LR + +S+ + S GF V S
Sbjct: 3 ETKPKRDSEYEGSNIKRMRLDD--DDDVLRSPTRTLSSSSSSSLAYSVSDSGGFCSVALS 60
Query: 204 SPEE 215
E+
Sbjct: 61 EEED 64
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG--FGFVCFSS 206
G ++YV+NL +L + F FG I + + + +G FGFV F +
Sbjct: 292 GHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFET 343
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML---EDGRSKGFGFVCF---SSPEEATK 224
++YV+NL I + +EF FGTI V L +D + FV F +S E A K
Sbjct: 258 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 317
Query: 225 A 227
A
Sbjct: 318 A 318
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML---EDGRSKGFGFVCF---SSPEEATK 224
++YV+NL I + +EF FGTI V L +D + FV F +S E A K
Sbjct: 317 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 376
Query: 225 A 227
A
Sbjct: 377 A 377
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +3
Query: 171 RSKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKEDR 302
+S+G GFV +SS E A A+ +NG +PL V A+ K +
Sbjct: 7 QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPK 53
>At1g10010.1 68414.m01129 amino acid permease, putative similar to
amino acid permease I GI:22641 from [Arabidopsis
thaliana]; GC splice site at position 1256 is predicted
from alignment and not confirmed experimentally
Length = 475
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 434 WTSSNDSNKTYNSKVECTAPCKA*HTSSIWAYC 532
W SN NK Y+SKV C+ +W C
Sbjct: 352 WPQSNFINKEYSSKVPLLGKCRVNLFRLVWRTC 384
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 249
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +3
Query: 408 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASGHIANFMQPTYR 557
S PP P + P T RP P + P P QAA+ + P Y+
Sbjct: 151 SPPPPPVLFSPPPPTVTRPPPPPTITRSPPPPRPQAAAYYKKTPPPPPYK 200
>At4g35870.1 68417.m05094 expressed protein
Length = 817
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 96 DDERLRKEFAPFGTITSAKVMLEDGRSKGFG--FVCFSSPEEATKAVTE 236
DDE+LRK + S ++GR++G G FV F A KAV +
Sbjct: 311 DDEKLRKLQELRADLESQLAAYKEGRAQGAGVAFVMFKDVYTANKAVQD 359
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 72 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 230
VKNL + F FG I V + + RS +GFV F A +A+
Sbjct: 1080 VKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSFSYGFVEFKEENAAQRAI 1132
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 28.3 bits (60), Expect = 3.7
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +3
Query: 378 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPR---WNAQPP----VRPSTQAASGHIAN 536
P GAS + S PP+PR P T RP +PR A PP RP+T +A+
Sbjct: 203 PRGASPQAISSKPPSPRAEPPTLDTP-RPPSPRAASLRADPPRLDAARPTTPRPPSPLAD 261
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 28.3 bits (60), Expect = 3.7
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +3
Query: 378 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPR---WNAQPP----VRPSTQAASGHIAN 536
P GAS + S PP+PR P T RP +PR A PP RP+T +A+
Sbjct: 202 PRGASPQAISSKPPSPRAEPPTLDTP-RPPSPRAASLRADPPRLDAARPTTPRPPSPLAD 260
>At3g25240.1 68416.m03153 hypothetical protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 281
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 494 RGLCIPPWSCRSYLSH 447
RGL +PPW SYL H
Sbjct: 222 RGLSLPPWRRSSYLQH 237
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 405 PSLPPAPRYYGPAQMTQIRPTTPRWNAQP 491
P PP P P+ +TQI+P TP N P
Sbjct: 14 PETPPQPSDSKPSTLTQIQP-TPSTNPSP 41
>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 895
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 399 FVPSLPPAPRYYGPAQMTQIRPTTPR--WNAQPP 494
+V S PP P YY P+ + + P +N+ PP
Sbjct: 815 YVYSSPPPPTYYSPSPKVEYKSPPPPYVYNSPPP 848
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 399 FVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAAS 521
+V S PP P YY P+ + + P + P P+ + S
Sbjct: 789 YVYSSPPPPPYYSPSPKVEYKSPPPPYVYSSPPPPTYYSPS 829
>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
protein low similarity to transcriptional repressor
Not4-Np [Homo sapiens] GI:6856207; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif)
Length = 944
Score = 27.5 bits (58), Expect = 6.5
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Frame = +3
Query: 18 REQLKSERLTRYQGVNLYVKNLDDTIDDERL---RKEFAPFGTIT------SAKVMLEDG 170
++QL S R+ + V Y+ L + DE L ++ F +G + +A V L D
Sbjct: 56 KQQLTSVRVIQRNLV--YIVGLPLNLADEDLLQHKEYFGQYGKVLKVSMSRTASVKLSDN 113
Query: 171 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 293
++ + EEA + + ++G I+ KPL K
Sbjct: 114 DFLHRRYITYGKEEEAVRCIQAVHGFILDGKPLKACFGTTK 154
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 414 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 515
PP P Y P + TQ P P ++ QP PS A
Sbjct: 47 PPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 414 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 515
PP P Y P + TQ P P ++ QP PS A
Sbjct: 47 PPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 414 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 515
PP P Y P + TQ P P ++ QP PS A
Sbjct: 47 PPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 414 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 515
PP P Y P + TQ P P ++ QP PS A
Sbjct: 47 PPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
++V L + ++R+ FG + ++ E G SKG+ F + A +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 240 NGRIVGTKPLYVALAQR 290
NG +G K L V A +
Sbjct: 421 NGIKMGDKTLTVRRANQ 437
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
++V L + ++R+ FG + ++ E G SKG+ F + A +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 240 NGRIVGTKPLYVALAQR 290
NG +G K L V A +
Sbjct: 421 NGIKMGDKTLTVRRANQ 437
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
++V L + ++R+ FG + ++ E G SKG+ F + A +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 240 NGRIVGTKPLYVALAQR 290
NG +G K L V A +
Sbjct: 421 NGIKMGDKTLTVRRANQ 437
>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 429
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 399 FVPSLPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRP 503
+V S PP P YY P+ + P P + PP P
Sbjct: 206 YVYSFPPPPPYYSPSPKVGYKSPPAPYVYSSPPPPP 241
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 399 FVPSLPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRP 503
+V S PP P YY P+ + P P + PP P
Sbjct: 232 YVYSSPPPPPYYSPSPKVNYKSPPPPYVYSSPPPPP 267
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 27.5 bits (58), Expect = 6.5
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
L+V L D + + +G + K E G+SKG+ V F A M
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263
Query: 240 NGRIVGTKPLYVALA 284
NG I K VA A
Sbjct: 264 NGFIFNGKACVVAFA 278
>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to Heterogeneous
nuclear ribonucleoprotein SP|P55795, SP|P31943,
SP|P52597 {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM) domain
Length = 289
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +3
Query: 165 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 308
DG++ G FV F + EEA +A+ + + +G++ + + R+E R+A
Sbjct: 237 DGKATGEAFVEFETGEEARRAMAK-DKMSIGSRYVELFPTTREEARRA 283
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 27.1 bits (57), Expect = 8.7
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFG-----TITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 230
LY+KNL I ERL+ F G I AK ED R +GFV ++ +A+
Sbjct: 36 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSR---YGFVHYAERTSVMRAL 92
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
L+V L + + + F F ++ + DG +K F F FS + A + +NG
Sbjct: 37 LFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDG-AKPFAFAVFSDLQSAVAVMHALNG 95
Query: 246 RI 251
+
Sbjct: 96 MV 97
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 414 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPS 506
PP+P YY P + P+TP PP P+
Sbjct: 735 PPSPVYYPPVTQSPPPPSTP-VEYHPPASPN 764
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 27.1 bits (57), Expect = 8.7
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
++V+N+ I + L + F PFG IT VML SS A + T +
Sbjct: 8 VHVRNVGHEISENDLLQLFQPFGVITKL-VMLRAKNQALLQMQDVSSAVSALQFFTNVQP 66
Query: 246 RIVGTKPLYVALAQRKE 296
I G + +YV + +E
Sbjct: 67 TIRG-RNVYVQFSSHQE 82
>At1g23050.1 68414.m02880 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 161
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 429 YYGPAQMTQIRPTTPRWNAQPPVRPSTQAASGHIA 533
+YGP I P P + +PP + ++S H+A
Sbjct: 99 FYGPPPPNAILPYFPYYFRKPPHQTDQTSSSSHVA 133
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,021,127
Number of Sequences: 28952
Number of extensions: 241999
Number of successful extensions: 1384
Number of sequences better than 10.0: 226
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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