Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0022
         (347 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12590.1 68417.m01985 expressed protein contains Pfam PF05863...    69   1e-12
At4g07310.1 68417.m01115 hypothetical protein similar to At2g108...    26   6.0  
At1g02630.1 68414.m00213 equilibrative nucleoside transporter, p...    26   7.9  

>At4g12590.1 68417.m01985 expressed protein contains Pfam PF05863:
           Eukaryotic protein of unknown function (DUF850)
          Length = 246

 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 30/78 (38%), Positives = 52/78 (66%)
 Frame = +3

Query: 114 ELLLDPNIRFWVFLPIVIITFLVGIVRHYVSLILSSQKKIELIQVQDSQVMIRARLLREN 293
           +L+LD  IR WV +P+ ++  L+GI+R++VS ++ S    +   V++ QV+IRAR L+  
Sbjct: 4   DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSTPTPDAKMVKEGQVVIRARNLKVG 63

Query: 294 GKYLPRQSFAMRRHWFNN 347
             ++P +SF  RR +F+N
Sbjct: 64  ANFIPPKSFRARRFYFSN 81


>At4g07310.1 68417.m01115 hypothetical protein similar to At2g10840,
           At5g35280, At2g10500, At2g05860, At4g07430, At1g39270
          Length = 242

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 111 PELLLDPNIRFWVFLPIVIITFLVGIV 191
           P  LL P+IR W     V+ TFLV +V
Sbjct: 6   PLSLLKPSIRGWCIRGRVVRTFLVSLV 32


>At1g02630.1 68414.m00213 equilibrative nucleoside transporter,
           putative (ENT8) identical to putative equilibrative
           nucleoside transporter ENT8 [Arabidopsis thaliana]
           GI:28207664; contains similarity to SWISS-PROT:O54699
           equilibrative nucleoside transporter 2 (Equilibrative
           nitrobenzylmercaptopurine riboside-insensitive
           nucleoside transporter, Equilibrative NBMPR-insensitive
           nucleoside transporter, Nucleoside transporter, ei-type)
           [Rattus norvegicus]; contains Pfam profile PF01733:
           Nucleoside transporter
          Length = 389

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 7/21 (33%), Positives = 17/21 (80%)
 Frame = +3

Query: 153 LPIVIITFLVGIVRHYVSLIL 215
           +P+V++TF++G+   Y++ +L
Sbjct: 329 VPVVVLTFMLGLTNGYLTSVL 349


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,131,693
Number of Sequences: 28952
Number of extensions: 127752
Number of successful extensions: 261
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)