Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0006
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...   252   2e-67
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...   252   2e-67
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)      248   3e-66
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con...    48   9e-06
At3g50610.1 68416.m05534 hypothetical protein                          29   2.4  
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put...    29   2.4  
At1g58220.1 68414.m06612 myb family transcription factor contain...    29   3.2  
At5g13260.1 68418.m01523 expressed protein                             28   5.6  
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta...    28   5.6  
At1g33410.1 68414.m04136 expressed protein                             28   5.6  
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa...    28   7.4  
At3g56700.1 68416.m06307 male sterility protein, putative simila...    28   7.4  
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein...    28   7.4  

>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score =  252 bits (616), Expect = 2e-67
 Identities = 121/222 (54%), Positives = 163/222 (73%), Gaps = 2/222 (0%)
 Frame = +2

Query: 80  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 259
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 260 MRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAP 433
           M+++++ H +N  N A+  LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP
Sbjct: 61  MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query: 434 LSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 613
           + VV+   NTGL P +TSFFQ L+IPTKI+KGT+EII  V ++K GDKVG+SEA LL  L
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180

Query: 614 NISPFSYGLVVKQVYDSGTXFAPEILDIKPEDLRAKFQAGVA 739
            I PFSYGLVV+ VYD+G+ F+PE+LD+  + L  KF +G++
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGIS 222


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score =  252 bits (616), Expect = 2e-67
 Identities = 121/222 (54%), Positives = 163/222 (73%), Gaps = 2/222 (0%)
 Frame = +2

Query: 80  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 259
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 260 MRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAP 433
           M+++++ H +N  N A+  LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP
Sbjct: 61  MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query: 434 LSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 613
           + VV+   NTGL P +TSFFQ L+IPTKI+KGT+EII  V ++K GDKVG+SEA LL  L
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180

Query: 614 NISPFSYGLVVKQVYDSGTXFAPEILDIKPEDLRAKFQAGVA 739
            I PFSYGLVV+ VYD+G+ F+PE+LD+  + L  KF +G++
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGIS 222


>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score =  248 bits (607), Expect = 3e-66
 Identities = 122/217 (56%), Positives = 159/217 (73%), Gaps = 2/217 (0%)
 Frame = +2

Query: 95  KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI 274
           KA  K  Y  K+ QLL+EY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTMM++++
Sbjct: 7   KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66

Query: 275 KDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVI 448
           + H D   N A   LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+
Sbjct: 67  RIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVV 126

Query: 449 PAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPF 628
              NTGL P +TSFFQ L+IPTKI+KGT+EII  V ++K GDKVG+SEA LL  L I PF
Sbjct: 127 QPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPF 186

Query: 629 SYGLVVKQVYDSGTXFAPEILDIKPEDLRAKFQAGVA 739
           SYGLVV+ VYD+G+ F PE+L++  +DL  KF AGV+
Sbjct: 187 SYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVS 223


>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
           contains similarity to 60S acidic ribosomal protein
           GI:5815233 from [Homo sapiens]
          Length = 235

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 37/200 (18%), Positives = 90/200 (45%), Gaps = 5/200 (2%)
 Frame = +2

Query: 128 IIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNN--PA 301
           I + +++Y   ++   +N+ + + ++ R   R +    +G N +M+ A+    ++     
Sbjct: 30  IREAVEKYSSVYVFSFENMRNIKFKEFRQQFRHNGKFFLGSNKVMQVALGRSAEDELRSG 89

Query: 302 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG-LGPE 478
           + K+   ++G+ G + T     EV       +    +R G+IA  +V +          E
Sbjct: 90  IYKVSKLLRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAVETVELKEGPLEQFTHE 149

Query: 479 KTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML--NISPFSYGLVVKQ 652
                + L +P +++KGT+E++ D  + + G ++    A +L +L   ++ F   L+ + 
Sbjct: 150 MEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLNLLCRW 209

Query: 653 VYDSGTXFAPEILDIKPEDL 712
                  +  ++ ++  EDL
Sbjct: 210 SPSDFELYREDLSELYREDL 229


>At3g50610.1 68416.m05534 hypothetical protein
          Length = 229

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +2

Query: 278 DHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPARPGAIAPLSVVIPA 454
           D +  +P     + H KGNV     + D       KLL+  VQ   + G+    +   P 
Sbjct: 31  DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90

Query: 455 HNTGLGPEK 481
           H+ G+G +K
Sbjct: 91  HSPGVGHKK 99


>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 890

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 290 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 388
           N P ++K    PHI   VGF+ T+GD+  + D  L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815


>At1g58220.1 68414.m06612 myb family transcription factor contains
           Pfam profile: PF00249: Myb-like DNA-binding domain
          Length = 834

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
 Frame = -2

Query: 603 RRVASEAPTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAM 424
           RR  +   +   G +   + M +     + VG  R   K++  G  P+L +G  T  GA 
Sbjct: 244 RRTDTSNTSTQTGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQ 300

Query: 423 APGRAGAWTLFSN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLL 289
           A G +   TL           +LSR +T  P   ++  +    GNS SRA L+
Sbjct: 301 ANGASSGSTLQGQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADLM 353


>At5g13260.1 68418.m01523 expressed protein
          Length = 537

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 239 ARYWSHVARYGSAASVASPRYRH 171
           ARYW   +RYG  + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352


>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
           domain-containing protein similarity to
           TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
           SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
           DnaJ domain, PF00515: TPR Domain
          Length = 1165

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -2

Query: 723 NLARRSSGLMSRI-SGAXIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTS 547
           N+ R  +   S I +G+   PE+Y+ +   PYE  E   + R  +++ P  +P +     
Sbjct: 357 NIGREFAFAESAIPNGSNEAPEAYSPMDISPYEETE---VCREFSADIPPTAPNYLFDAE 413

Query: 546 LMISIVPFEILVGIE 502
           L+ +    EI  G E
Sbjct: 414 LVAATERMEINEGDE 428


>At1g33410.1 68414.m04136 expressed protein
          Length = 1459

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 189 RNRCSRSVSRYVAPVSCSW--EKTQ*CAKPSKTTWTTIQPSRNCC 317
           RN  S +V R +  V  S   EKT  C++ +   W  +Q  R CC
Sbjct: 823 RNGQSDAVERILVVVEASLRGEKTFGCSQDTSGDWCLLQHLRGCC 867


>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 666

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = -2

Query: 441 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 328
           T+NGA   G A      S SLS  S  SP VN +  LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242


>At3g56700.1 68416.m06307 male sterility protein, putative similar
           to SP|Q08891 Male sterility protein 2 {Arabidopsis
           thaliana}; contains Pfam profile PF03015: Male sterility
           protein
          Length = 527

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 300 PSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSK 404
           P R   HT+R    SC   ETS  +VT+    K++
Sbjct: 33  PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67


>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
           protein-related similar to ATP-dependent Clp protease,
           ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
           putida KT2440]; similar to  ClpB protein
           (SP:Q9RA63){Thermus thermophilus}
          Length = 422

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -1

Query: 457 VGGNDD*QWGNGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 311
           +G + +  +G+ T      + +LQ      + +S+GE E    +D W Q
Sbjct: 329 IGSHFERCFGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,955,924
Number of Sequences: 28952
Number of extensions: 398584
Number of successful extensions: 1160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)