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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0002
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49830.1 68418.m06171 expressed protein                             43   2e-04
At1g10385.1 68414.m01170 hypothetical protein                          40   0.001
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ...    30   1.2  
At4g34131.1 68417.m04841 UDP-glucoronosyl/UDP-glucosyl transfera...    29   2.8  
At5g38050.1 68418.m04585 hypothetical protein                          29   3.8  
At3g10180.1 68416.m01219 kinesin motor protein-related similar t...    29   3.8  
At3g07920.1 68416.m00967 eukaryotic translation initiation facto...    28   5.0  
At3g18090.1 68416.m02300 DNA-directed RNA polymerase family prot...    28   6.6  
At5g66280.1 68418.m08357 GDP-D-mannose 4,6-dehydratase, putative...    27   8.7  
At5g09820.1 68418.m01136 plastid-lipid associated protein PAP / ...    27   8.7  
At3g23780.1 68416.m02989 DNA-directed RNA polymerase family prot...    27   8.7  
At1g53830.1 68414.m06127 pectinesterase family protein identical...    27   8.7  

>At5g49830.1 68418.m06171 expressed protein
          Length = 752

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 24/78 (30%), Positives = 43/78 (55%)
 Frame = +2

Query: 152 EIDMDKFAVPDFVPERYVKDLARSCVGGEELQQQKEKIQNLAEETASALKKNVYENYMQF 331
           E  +  F    F  + YV+  ++  +  ++++Q    + +L   +A  ++++VY NY  F
Sbjct: 21  EEGLSLFKSDKFDADAYVQ--SKCSINEKDIKQLCSYLLDLKRASAEEMRRSVYANYPAF 78

Query: 332 IETATEISHLETEMSSYR 385
           I T+ EIS LE E+SS R
Sbjct: 79  IRTSKEISDLEGELSSIR 96


>At1g10385.1 68414.m01170 hypothetical protein
          Length = 754

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 22/67 (32%), Positives = 36/67 (53%)
 Frame = +2

Query: 185 FVPERYVKDLARSCVGGEELQQQKEKIQNLAEETASALKKNVYENYMQFIETATEISHLE 364
           F P+ YV    +  +  +E +     +  L + +A  ++K+VY NY  FI T+ EIS LE
Sbjct: 37  FDPDAYVTSKCQR-MNEKETRHLSSYLVELKKASAEEMRKSVYANYAAFIRTSKEISALE 95

Query: 365 TEMSSYR 385
            ++ S R
Sbjct: 96  GQLLSMR 102


>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1116

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 530 NLITEKVESCMNLLDVPDRTLLHEGDLLEIDAEENTGLQRMRVYL 664
           +++TE+++ C    +  D  L    DLLE+DA +  G +++R  L
Sbjct: 483 DVVTEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVRYLL 527


>At4g34131.1 68417.m04841 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 481

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 182 DFVPERYVKDLARSCVGGEELQQQKEKIQNLAEETASALK-KNVYENYMQFIETAT 346
           DF+    V    R  + GEE  +++E+ + LAE   +A++  + + +   FIE  T
Sbjct: 425 DFISREKVVKAVREVLVGEEADERRERAKKLAEMAKAAVEGGSSFNDLNSFIEEFT 480


>At5g38050.1 68418.m04585 hypothetical protein
          Length = 281

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +1

Query: 253 EGENTKFSRRNRKCPKEKCLR---ELYAVYRDCDGDIPPRNRNVKLSHL 390
           +GEN +  + +R   + KCLR   E  +  R     +PP  + VK++H+
Sbjct: 100 DGENFRLEKLHRSVKRLKCLRVPDESASASRVVTKIVPPVEKPVKMAHI 148


>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
           centromere protein E GB:4502781 [Homo sapiens]
          Length = 1348

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 236 EELQQQKEKIQNLAEETASALKKNV---YENYMQFIETATEISHLETEMSSYR 385
           EE+   +E+ Q   E+  S   + +    EN+   +  ATEI  LE+E   Y+
Sbjct: 639 EEIHAAREEAQVAREQLVSKESEVIDVINENFNSLVNVATEIEVLESEFQKYK 691


>At3g07920.1 68416.m00967 eukaryotic translation initiation factor 2
           subunit 2, putative / eIF-2-beta, putative similar to
           SP|P41035 Eukaryotic translation initiation factor 2
           subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
           Pfam profile PF01873: Domain found in IF2B/IF5
          Length = 169

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 266 QNLAEETASALKKNVYENYMQFIET 340
           Q L EETA   KK V+ N+M + +T
Sbjct: 47  QVLREETAKGTKKTVFVNFMDYCKT 71


>At3g18090.1 68416.m02300 DNA-directed RNA polymerase family protein
           similar to SP|P38420 DNA-directed RNA polymerase II 135
           kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit
           2) {Arabidopsis thaliana}; contains Pfam profiles
           PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA
           polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2
           domain 3, PF04566: RNA polymerase Rpb2 domain 4,
           PF04567: RNA polymerase Rpb2 domain 5
          Length = 1038

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 304 KCLRELYAVYRDCDGDIPPRNRNVKLSHLLSEQRSVLTVLSHA 432
           KCL   YA  R C+     RN+ ++L+  L E R +   L+HA
Sbjct: 246 KCLLSAYAGKRKCENRDSFRNKRIELAGELLE-REIRVHLAHA 287


>At5g66280.1 68418.m08357 GDP-D-mannose 4,6-dehydratase, putative
           strong similarity to GDP-D-mannose-4,6-dehydratase
           [Arabidopsis thaliana] GI:1764100
          Length = 361

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 70  YRIE*CASQCFVINTKEVYNKYMCNDV 150
           Y    CA+  + +N +E Y  Y CN +
Sbjct: 173 YAASKCAAHWYTVNYREAYGLYACNGI 199


>At5g09820.1 68418.m01136 plastid-lipid associated protein PAP /
           fibrillin family protein low similarity to plastid-lipid
           associated protein PAP3 [Brassica rapa] GI:14248552;
           contains Pfam profile PF04755: PAP_fibrillin
          Length = 259

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 221 SCVGGEELQQQKEKIQNLAEETASALKKNVYE 316
           SC    E QQ +E+ Q   E T S +K+ +YE
Sbjct: 61  SCSSPNEQQQDEEQEQEQEEITVSHIKEELYE 92


>At3g23780.1 68416.m02989 DNA-directed RNA polymerase family protein
           similar to SP|P38420 DNA-directed RNA polymerase II 135
           kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit
           2) {Arabidopsis thaliana}; contains Pfam profiles
           PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA
           polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2
           domain 3, PF04566: RNA polymerase Rpb2 domain 4,
           PF04567: RNA polymerase Rpb2 domain 5
          Length = 946

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 304 KCLRELYAVYRDCDGDIPPRNRNVKLSHLLSEQRSVLTVLSHA 432
           KCL   YA  R C+     RN+ ++L+  L E R +   L+HA
Sbjct: 155 KCLLNSYAGKRKCENRDSFRNKRIELAGELLE-REIRVHLAHA 196


>At1g53830.1 68414.m06127 pectinesterase family protein identical to
           pectinesterase 2 (PME2/ PE 2) SP:Q42534 from
           [Arabidopsis thaliana];contains Pfam profiles: PF01095
           pectinesterase, PF04043 plant invertase/pectin
           methylesterase inhibitor
          Length = 587

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +2

Query: 116 KKYTINTCATMSEIDMDKFAVPDFVPERYVKDLARSCVGGEELQQQKEKIQNLAEETASA 295
           K   I T ++ S   +         PE     +A +  GG+EL  QKE I+     T  A
Sbjct: 47  KNQKITTLSSTSHAILKSVCSSTLYPELCFSAVAAT--GGKELTSQKEVIEASLNLTTKA 104

Query: 296 LKKNVY 313
           +K N +
Sbjct: 105 VKHNYF 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,921,822
Number of Sequences: 28952
Number of extensions: 232358
Number of successful extensions: 666
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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