Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0100
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15430.1 68417.m02360 early-responsive to dehydration protein...    28   7.2  
At1g59530.1 68414.m06690 bZIP transcription factor family protei...    28   7.2  

>At4g15430.1 68417.m02360 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 756

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 28/90 (31%), Positives = 41/90 (45%)
 Frame = +3

Query: 159 QLYFLIACFLL*VSPCF*SKNLCIFFL*FCAYKVFVSDID*DMFIQYSVGFFGINVSDCI 338
           QLYFL+      VSP      L  F L F  Y+  V ++    +   S G F  +V   +
Sbjct: 568 QLYFLLGLVYAAVSPILLPFILVFFGLAFVVYRHQVINVYNQKY--ESAGKFWPDVHRRV 625

Query: 339 NTSLVIILCPVAIDLLSMSWALKILPFMIV 428
            T+LV+    + + LLS   A K  P ++V
Sbjct: 626 VTALVVSQL-LLMGLLSTKHASKSTPLLLV 654


>At1g59530.1 68414.m06690 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 148

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 252 RRKTKEKKCISFLIKNMGSLKARNKQLKNTIAQI 151
           R + K+KK    L + +  L  RN++LKN +A +
Sbjct: 64  RSRMKKKKRFEELTEEVNRLNIRNQELKNRLANV 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,720,268
Number of Sequences: 28952
Number of extensions: 225734
Number of successful extensions: 359
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)