Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0076
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23580.1 68418.m02767 calcium-dependent protein kinase 9 (CDP...    33   0.17 
At4g32620.1 68417.m04644 expressed protein predicted protein T10...    32   0.39 
At4g26160.1 68417.m03765 thioredoxin family protein low similari...    29   2.8  
At2g38910.1 68415.m04783 calcium-dependent protein kinase, putat...    29   3.6  
At3g56100.1 68416.m06235 leucine-rich repeat transmembrane prote...    28   4.8  
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain...    28   4.8  
At3g42910.1 68416.m04500 expressed protein ; expression supporte...    28   6.4  
At3g21220.1 68416.m02682 mitogen-activated protein kinase kinase...    28   6.4  
At4g09570.1 68417.m01575 calcium-dependent protein kinase, putat...    27   8.4  
At4g04710.1 68417.m00692 calcium-dependent protein kinase, putat...    27   8.4  
At3g24870.1 68416.m03119 expressed protein                             27   8.4  
At1g50120.1 68414.m05621 expressed protein                             27   8.4  
At1g44020.1 68414.m05078 DC1 domain-containing protein contains ...    27   8.4  

>At5g23580.1 68418.m02767 calcium-dependent protein kinase 9 (CDPK9)
           identical to calcium-dependent protein kinase
           [Arabidopsis thaliana] gi|836938|gb|AAA67653; contains
           protein kinase domain, Pfam:PF00069; contains EF hand
           domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 490

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 588 CHSLEIVHNELMAEDFQAGISGPEAA*RGAASGLPGAAHPGRLYS 454
           CHSL +VH +L  E+F    S  +A+ +    GL     PG  +S
Sbjct: 137 CHSLGVVHRDLKPENFLFSSSDEDASLKSTDFGLSVFCTPGEAFS 181


>At4g32620.1 68417.m04644 expressed protein predicted protein
            T10M13.8, Arabidopsis thaliana
          Length = 1544

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
 Frame = +3

Query: 171  GHPSSSGMTHSVSSLLGGIQSKSRK--NDVSLTAPVAP-VENSNPRMMN-RLPMPGMNQD 338
            G  S + M++S S +    +++S    N +S+  P++   E+  P+  N  L + G +  
Sbjct: 890  GSDSENWMSYSSSVVRHKHETRSNVSVNGISIQVPISDDCEDGTPQSSNLALNIQGSSNS 949

Query: 339  SPM-TSPHAFNNKSASAMSPHLT 404
            SP  T+P +  N+S S+++ HL+
Sbjct: 950  SPKATAPRSMWNRSKSSLNGHLS 972


>At4g26160.1 68417.m03765 thioredoxin family protein low similarity
           to thioredoxin [Ictalurus punctatus] GI:9837585;
           contains Pfam profile: PF00085 Thioredoxin
          Length = 221

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 180 SSSGMTHSVSSLLGGIQSKSRKNDVSLTAPVAPVENSNPRMMNRLPMPGM 329
           SSS  + + SSL+G +   SR   +S+       E   P+   R   P M
Sbjct: 46  SSSSSSLTTSSLIGNLVFSSRNQSLSVKVQALAAETEQPKWWERKAGPNM 95


>At2g38910.1 68415.m04783 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase, isoform AK1 (CDPK) [Arabidopsis thaliana]
           SWISS-PROT:Q06850; contains protein kinase domain,
           Pfam:PF00069; contains EF hand domain (calcium-binding
           EF-hand), Pfam:PF00036, INTERPRO:IPR002048
          Length = 583

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 588 CHSLEIVHNELMAEDFQAGISGPEAA*RGAASGLPGAAHPGRLYS 454
           CHSL ++H +L  E+F       EAA +    GL     PG  ++
Sbjct: 249 CHSLGVMHRDLKPENFLFVSGDEEAALKTIDFGLSVFFKPGETFT 293


>At3g56100.1 68416.m06235 leucine-rich repeat transmembrane protein
           kinase, putative hypothetical proteins - Arabidopsis
           thaliana
          Length = 719

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 500 APRHAASGPDIPAWKSSAISSLWT 571
           +P  A +G D+P W ++A+   WT
Sbjct: 621 SPSEALNGVDLPQWVATAVKEEWT 644


>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to  NtN2 [Medicago truncatula] GI:3776084; contains Pfam
           profile PF00917: MATH domain
          Length = 420

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
 Frame = +2

Query: 419 GCGTGTNRGGRHE*SRPGCA--APGKPDAAPRHAASGPDIPAW 541
           GCG G  RGGR    R G     PG P   P     GP  P +
Sbjct: 5   GCGGGPGRGGRGFGGRGGGPGFGPGGPGFGPGGPGFGPGGPGF 47


>At3g42910.1 68416.m04500 expressed protein ; expression supported
           by MPSS
          Length = 649

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 520 RARYTRLE-ILRHKLIMDNFQAMAWDTARIPPRLSTEVTAAVRGT 651
           R   TR++ I+R  +++D  Q ++W    + PR+   V  A +G+
Sbjct: 65  RLNSTRVDPIIRPDVVLDPAQDLSWAVDEVDPRVDAMVKLASKGS 109


>At3g21220.1 68416.m02682 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK5) identical to GB:BAA28831 from
           [Arabidopsis thaliana]; mitogen-activated protein kinase
           kinase (MAPKK) family, PMID:12119167
          Length = 348

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +3

Query: 201 SVSSLLGGIQSKSRKN-DVSLTAPVAPVENSNPRMMNRLPMPGMNQDSPMTSPHAFNNKS 377
           S S +   ++++ RK  D+SL  P   V  + P     LP P  +  +P +S     N S
Sbjct: 6   SPSGVASPMKNRLRKRPDLSLPLPHRDVALAVPLP---LPPPSSSSSAPASSSAISTNIS 62

Query: 378 ASAMSPHLTQSGMMGAGPGQT 440
           A+     L +   +G+G G T
Sbjct: 63  AAKSLSELERVNRIGSGAGGT 83


>At4g09570.1 68417.m01575 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Arabidopsis thaliana] gi|604881|dbj|BAA04830;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 501

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 588 CHSLEIVHNELMAEDFQAGISGPEAA*RGAASGLPGAAHPGR-LYSCLPPRFVPVP 424
           CHSL ++H +L  E+F       +A  +    GL     PG+ LY  +   +   P
Sbjct: 140 CHSLGVMHRDLKPENFLFDSPSDDAKLKATDFGLSVFYKPGQYLYDVVGSPYYVAP 195


>At4g04710.1 68417.m00692 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Nicotiana tabacum] gi|3283996|gb|AAC25423;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 575

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 588 CHSLEIVHNELMAEDF 541
           CHSL++VH +L  E+F
Sbjct: 141 CHSLDVVHRDLKPENF 156


>At3g24870.1 68416.m03119 expressed protein
          Length = 1841

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = +3

Query: 306  NRLPMPGMNQDSPMTSPHAFNNKSASAM--SPHLTQSGMMG 422
            N + + GMN+++PM+ P  F   +++AM  + ++  SGM+G
Sbjct: 1260 NAMGVSGMNRNTPMSRP-GFQGMASAAMPNTGNMHTSGMVG 1299


>At1g50120.1 68414.m05621 expressed protein
          Length = 532

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
 Frame = +3

Query: 150 NESLSNDGHPSSSGMTHSVSSLLGGIQSKSRKNDVSLTAPVAPVENSNPRMM-NRLPMPG 326
           +E  S   +P+ S +  +  S L  + S  R + +  T+ V     S+P+MM ++L    
Sbjct: 244 DEISSVSSYPNKSNLNRTFGSSLS-LNSGPRLS-MKDTSYVEERVGSSPKMMLSQLSAAV 301

Query: 327 MNQDS--PMTSPHAFNNKSASAMSPHLTQSGMMGAGPGQTA 443
           ++ DS   ++SPH  +N    +  P  T        PG  A
Sbjct: 302 VSYDSGTDVSSPHKSSNSVVPSQQPKQTNGAGASMSPGAGA 342


>At1g44020.1 68414.m05078 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 577

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 380 CRFVVKRMWTGHR*ILIHSRHREAIHHTRIRIFNWCDWGC 261
           C FVV +  TG   ++  SRHR  I  T    F+  DW C
Sbjct: 427 CDFVVHQRCTGLPRVIRISRHRHRISFT--TSFDEGDWSC 464


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,765,326
Number of Sequences: 28952
Number of extensions: 256856
Number of successful extensions: 781
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)