Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0070
(513 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 101 4e-22
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 90 7e-19
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 90 7e-19
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 75 3e-14
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 71 6e-13
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 71 6e-13
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 71 6e-13
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 66 2e-11
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 65 2e-11
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 63 1e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 54 4e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 50 1e-06
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 44 8e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 43 1e-04
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 41 4e-04
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 40 0.001
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 39 0.002
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 39 0.002
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 39 0.002
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 36 0.016
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 36 0.016
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 35 0.037
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 35 0.037
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 33 0.11
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 32 0.20
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 32 0.26
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 31 0.34
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 31 0.34
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 31 0.46
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 31 0.46
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 31 0.46
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 31 0.46
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 29 1.8
At2g33420.1 68415.m04096 expressed protein 28 3.2
At5g22960.1 68418.m02684 serine carboxypeptidase S10 family prot... 28 4.2
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 28 4.2
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 28 4.2
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 4.2
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 27 5.6
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 27 5.6
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 27 5.6
At2g25460.1 68415.m03049 expressed protein 27 5.6
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 5.6
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 5.6
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 5.6
At3g48770.1 68416.m05326 hypothetical protein 27 9.8
At3g19515.1 68416.m02473 expressed protein 27 9.8
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 27 9.8
At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR... 27 9.8
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 101 bits (241), Expect = 4e-22
Identities = 46/96 (47%), Positives = 62/96 (64%)
Frame = +1
Query: 226 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEE 405
++ R+ D D L PF KNFY P V + EVEEYR E+TV G ++ P++ F +
Sbjct: 46 ESPRKLDLDG--LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRD 103
Query: 406 ANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
FPDYV + VK G+ EPTPIQ+QGWP+AM G++L
Sbjct: 104 VGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDL 139
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 90.2 bits (214), Expect = 7e-19
Identities = 37/85 (43%), Positives = 57/85 (67%)
Frame = +1
Query: 259 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438
+L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 439 KTMGYKEPTPIQAQGWPIAMSGKNL 513
+G+ EPTPIQAQGWP+A+ G++L
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDL 205
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 90.2 bits (214), Expect = 7e-19
Identities = 37/85 (43%), Positives = 57/85 (67%)
Frame = +1
Query: 259 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438
+L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 439 KTMGYKEPTPIQAQGWPIAMSGKNL 513
+G+ EPTPIQAQGWP+A+ G++L
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDL 205
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 74.9 bits (176), Expect = 3e-14
Identities = 30/90 (33%), Positives = 51/90 (56%)
Frame = +1
Query: 244 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 423
D S+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 424 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
+ +K Y++PT IQ Q PI +SG+++
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALPIVLSGRDV 268
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.5 bits (165), Expect = 6e-13
Identities = 32/74 (43%), Positives = 43/74 (58%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGKNL 513
QAQ WPIAM G+++
Sbjct: 185 QAQSWPIAMQGRDI 198
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.5 bits (165), Expect = 6e-13
Identities = 32/74 (43%), Positives = 43/74 (58%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGKNL 513
QAQ WPIAM G+++
Sbjct: 185 QAQSWPIAMQGRDI 198
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 70.5 bits (165), Expect = 6e-13
Identities = 32/74 (43%), Positives = 43/74 (58%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGKNL 513
QAQ WPIAM G+++
Sbjct: 185 QAQSWPIAMQGRDI 198
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 65.7 bits (153), Expect = 2e-11
Identities = 30/89 (33%), Positives = 47/89 (52%)
Frame = +1
Query: 244 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 423
D + +PF KNFY + + + V YR E+ V G +V PIQ++ +
Sbjct: 347 DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSK 406
Query: 424 VQQGVKTMGYKEPTPIQAQGWPIAMSGKN 510
+ +K + Y++P PIQAQ PI MSG++
Sbjct: 407 ILDTLKKLNYEKPMPIQAQALPIIMSGRD 435
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 65.3 bits (152), Expect = 2e-11
Identities = 29/89 (32%), Positives = 47/89 (52%)
Frame = +1
Query: 244 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 423
D + +PF KNFY + + + EV YR E+ V G +V PI+++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 424 VQQGVKTMGYKEPTPIQAQGWPIAMSGKN 510
+ +K + Y++P PIQ Q PI MSG++
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRD 568
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 62.9 bits (146), Expect = 1e-10
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Frame = +1
Query: 274 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 441
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 442 TMGYKEPTPIQAQGWPIAMSGKNL 513
+ G+ PTPIQAQ WPIA+ +++
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDI 475
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 54.4 bits (125), Expect = 4e-08
Identities = 25/77 (32%), Positives = 44/77 (57%)
Frame = +1
Query: 283 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 462
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 463 TPIQAQGWPIAMSGKNL 513
TPIQ QG P+ +SG+++
Sbjct: 121 TPIQVQGLPVVLSGRDM 137
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 49.6 bits (113), Expect = 1e-06
Identities = 23/76 (30%), Positives = 42/76 (55%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 465
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 466 PIQAQGWPIAMSGKNL 513
PIQ QG P+ ++G+++
Sbjct: 171 PIQVQGLPVILAGRDM 186
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 43.6 bits (98), Expect = 8e-05
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +1
Query: 358 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDL 207
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +1
Query: 340 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 41.1 bits (92), Expect = 4e-04
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Frame = +1
Query: 229 NMRRPDWD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYF 399
N R WD + PF + +P P ++ + + + + SG V P+ F
Sbjct: 102 NNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTF 161
Query: 400 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
E + + + ++ Y +PTP+Q PI + G++L
Sbjct: 162 AEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDL 199
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 316 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 489
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 490 IAMSGKNL 513
A++GK+L
Sbjct: 143 AALTGKSL 150
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
Frame = +1
Query: 229 NMRRPDWD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 399
N R WD PF N DP + + E Y + + SG V P+ F
Sbjct: 90 NARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTF 148
Query: 400 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
E + + + ++ Y +PTP+Q PI +G++L
Sbjct: 149 AEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDL 186
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 38.7 bits (86), Expect = 0.002
Identities = 14/59 (23%), Positives = 33/59 (55%)
Frame = +1
Query: 337 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + +++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDV 353
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 325 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 499 SGKNL 513
G++L
Sbjct: 150 DGRDL 154
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 35.9 bits (79), Expect = 0.016
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKNL 513
V + G+ P+PIQAQ WPIAM +++
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDI 269
Score = 31.1 bits (67), Expect = 0.46
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 331 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 420
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 35.9 bits (79), Expect = 0.016
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
FE N V +K GYK PTPIQ + P+ +SG
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG 65
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 34.7 bits (76), Expect = 0.037
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Frame = +1
Query: 229 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 399
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 400 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
+ + D + ++ Y PTP+Q PI ++ ++L
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDL 191
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 34.7 bits (76), Expect = 0.037
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Frame = +1
Query: 229 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 399
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 400 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
+ + D + ++ Y PTP+Q PI ++ ++L
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDL 191
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 33.1 bits (72), Expect = 0.11
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 325 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 505 KNL 513
K++
Sbjct: 84 KDV 86
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +1
Query: 373 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK++
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDV 49
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 31.9 bits (69), Expect = 0.26
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
PI+ F++ D V +GV GYK+P+ IQ + + G+++
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDV 62
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 31.5 bits (68), Expect = 0.34
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
FE+ + G+ G++ P+PIQ + PIA++G+++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDI 171
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 31.5 bits (68), Expect = 0.34
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
FE+ + G+ G++ P+PIQ + PIA++G+++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDI 171
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 31.1 bits (67), Expect = 0.46
Identities = 20/83 (24%), Positives = 35/83 (42%)
Frame = +1
Query: 265 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 444
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 445 MGYKEPTPIQAQGWPIAMSGKNL 513
MG+ T IQA+ P M G+++
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDV 194
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 31.1 bits (67), Expect = 0.46
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
FE+ + +G+ G+++P+PIQ + PIA++G ++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDI 164
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 31.1 bits (67), Expect = 0.46
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
FE+ + +G+ G+++P+PIQ + PIA++G ++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDI 164
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 31.1 bits (67), Expect = 0.46
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
FE+ + +G+ G+++P+PIQ + PIA++G ++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDI 194
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +1
Query: 445 MGYKEPTPIQAQGWPIAMSGKNL 513
MG++ PT +QAQ P+ +SG+++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDV 70
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 18 SKRIHSLNKHLQLNPKI 68
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At5g22960.1 68418.m02684 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase III [Precursor]
(SP:P37891) [Oryza sativa]
Length = 190
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +1
Query: 238 RPDWDSVS--LQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHN 384
R D DSVS L F + F+ HP + K Y E H + VHN
Sbjct: 111 RHDEDSVSNDLYDFLQAFFKEHPNLAKDDFYITGESYAGHYIPALASRVHN 161
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
FE ++ + K +G ++PTP+Q P ++G+++
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDV 98
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 18 SKRIHSLNKHLQLNPKI 68
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 5.6
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +1
Query: 229 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYRNNH--EVTVSGVEVHNPIQY 396
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 397 FEE 405
EE
Sbjct: 811 NEE 813
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 5.6
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +1
Query: 229 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYRNNH--EVTVSGVEVHNPIQY 396
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 397 FEE 405
EE
Sbjct: 811 NEE 813
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 179 LEDLEDLVGKKNSLEVRTCVAQIGILFHSNLSTKTFMIH 295
+ D++ +GK V C A++G+ F S +T M H
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTYATVDVMPH 568
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 5.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 154 ETNYRRICCLLQIWNHRFHGYY 89
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 462
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 463 TPIQAQGWPIAMS 501
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 462
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 463 TPIQAQGWPIAMS 501
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 462
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 463 TPIQAQGWPIAMS 501
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At3g48770.1 68416.m05326 hypothetical protein
Length = 1899
Score = 26.6 bits (56), Expect = 9.8
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Frame = +2
Query: 143 IIRLDLATVAVDLEDLEDLVGKKNSLEVRTCVAQI---GILFH-----SNLSTKTFMIHI 298
+IR + V E +E GK+ LE TC A++ G+++ LS M ++
Sbjct: 1805 MIRWEREKGVVYAEKMEKTCGKRKLLEYATCFAEVIAKGVMWEREDLIGRLSELVKMAYL 1864
Query: 299 LQFSK---DHHMKSKSTEI 346
++F + + MKSK+ ++
Sbjct: 1865 VEFDEEALEFLMKSKNLQV 1883
>At3g19515.1 68416.m02473 expressed protein
Length = 507
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 325 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 423
E E N E G HNP + EE +PD+
Sbjct: 387 ETESEEENPEDNQKGNPEHNPKEKSEEMQYPDF 419
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = +1
Query: 247 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQY 396
W++ +QP PHPT + +Y N +++ + + +NP+ +
Sbjct: 267 WNNPIMQPTGFYCAPPHPTPPPTNNLGYIQYMNGFDLSGTNISGYNPLAW 316
>At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 776
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 107 VVPNLEEATNSAIIRLDLATVAVDLEDLEDLVGKKNSLEVRTC 235
V+P+L EATN I+ L V+L + K +L++ C
Sbjct: 643 VIPDLSEATNLEILNLKFCESLVELPSSIRNLNKLLNLDMLNC 685
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,519,366
Number of Sequences: 28952
Number of extensions: 173668
Number of successful extensions: 578
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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