Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0059
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21320.1 68416.m02693 hypothetical protein                          28   5.6  
At5g17630.1 68418.m02067 glucose-6-phosphate/phosphate transloca...    27   7.4  
At4g10200.1 68417.m01672 hAT dimerisation domain-containing prot...    27   9.7  

>At3g21320.1 68416.m02693 hypothetical protein
          Length = 540

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 357 LVPLRFQNKLLVPFETSVPSAFSFQALPQPFVHFCID*I*PF 232
           +VP+  Q+ L  PF   V S FS    P P     +D   PF
Sbjct: 392 MVPVYGQDSLETPFRFPVSSPFSHSYFPPPNARTTVDQTNPF 433


>At5g17630.1 68418.m02067 glucose-6-phosphate/phosphate
           translocator, putative similar to
           glucose-6-phosphate/phosphate-translocator precursor
           [Solanum tuberosum] gi|2997593|gb|AAC08526
          Length = 417

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = -3

Query: 214 SLELF---LFFLLMWSFIVFFLPKYFFPFIILSQQVMGIKHNISECNKCMYNQR----FI 56
           S +LF   ++ L++WSF ++  PK   PFII +     + H I   + C+   +    F 
Sbjct: 145 SFQLFAGSIWMLVLWSFKLYPCPKISKPFII-ALLGPALFHTIGHISACVSFSKVAVSFT 203

Query: 55  HLIYSR--VLTMTMNQMIG 5
           H+I S   V ++  + ++G
Sbjct: 204 HVIKSAEPVFSVIFSSLLG 222


>At4g10200.1 68417.m01672 hAT dimerisation domain-containing protein
           / transposase-related low similarity to transposase
           [Ipomoea purpurea] AB004906 GI:4063770
          Length = 733

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 212 IGTFSFLFTNVVFYCLLFT 156
           IG F FLF  V++Y LLFT
Sbjct: 453 IGGFEFLFGMVIWYNLLFT 471


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,429,591
Number of Sequences: 28952
Number of extensions: 149046
Number of successful extensions: 413
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)