Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0034
(343 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50200.1 68414.m05629 aminoacyl-tRNA synthetase family protei... 29 0.61
At4g12020.1 68417.m01912 protein kinase family protein similar t... 28 1.4
At5g64550.1 68418.m08112 loricrin-related contains weak similari... 27 2.5
At3g49490.1 68416.m05409 expressed protein 27 2.5
At3g02310.1 68416.m00213 developmental protein SEPALLATA2 / flor... 27 3.3
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 27 3.3
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam... 27 4.3
At5g48300.1 68418.m05966 glucose-1-phosphate adenylyltransferase... 27 4.3
At5g41120.1 68418.m04999 esterase/lipase/thioesterase family pro... 26 5.7
At5g19220.1 68418.m02289 glucose-1-phosphate adenylyltransferase... 26 5.7
At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containi... 26 5.7
At1g80440.1 68414.m09419 kelch repeat-containing F-box family pr... 26 5.7
At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containi... 26 7.6
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica... 26 7.6
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 26 7.6
At1g22470.1 68414.m02808 expressed protein 26 7.6
At5g52010.1 68418.m06454 zinc finger (C2H2 type) family protein ... 25 10.0
At5g44620.1 68418.m05467 cytochrome P450 family protein similar ... 25 10.0
At4g37360.1 68417.m05291 cytochrome P450 family protein cytochro... 25 10.0
At4g32820.1 68417.m04668 expressed protein ; expression supporte... 25 10.0
At4g03670.1 68417.m00502 hypothetical protein 25 10.0
At1g80470.1 68414.m09425 F-box family protein contains F-box dom... 25 10.0
At1g04700.1 68414.m00467 protein kinase family protein low simil... 25 10.0
>At1g50200.1 68414.m05629 aminoacyl-tRNA synthetase family protein
contains Pfam profiles: PF01411 tRNA synthetases class
II (A), PF02272 DHHA1 domain
Length = 1003
Score = 29.5 bits (63), Expect = 0.61
Identities = 19/79 (24%), Positives = 31/79 (39%)
Frame = +3
Query: 96 GPPDHPASADRIQSLFNDIELYPTKTQVFEMLVCARQCARRKSLTLTFGEFCVFAAELRR 275
G P P RI+S+ N + + VF + R K L FGE +
Sbjct: 683 GKPVDPEDLRRIESIVN--KQIKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVS 740
Query: 276 CSRQARQVXSKPESPXWNI 332
R+ + + PE+ W++
Sbjct: 741 IGRKVEDLLADPENNEWSL 759
>At4g12020.1 68417.m01912 protein kinase family protein similar to
mitogen-activated protein kinase [Arabidopsis thaliana]
GI:1255448; contains Pfam profiles PF02671: Paired
amphipathic helix repeat, PF03106: WRKY DNA-binding
domain, PF00560: Leucine Rich Repeat, PF00069: Protein
kinase domain, PF00931: NB-ARC domain
Length = 1798
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 47 YFQPHKGG--CERLGVPRGASRSSSICRSH 130
Y + H GG CE LG +GA S+ C +H
Sbjct: 133 YCKAHGGGRRCEYLGCTKGAEGSTDFCIAH 162
>At5g64550.1 68418.m08112 loricrin-related contains weak similarity
to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
Length = 634
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +2
Query: 59 HKGG--CERLGVPRGASRSSSICRSH 130
H GG C++LG +GA ++ C++H
Sbjct: 235 HGGGQRCQKLGCNKGAESKTTFCKAH 260
>At3g49490.1 68416.m05409 expressed protein
Length = 953
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 99 PPDHPASADRIQSLFNDIELYPTKTQVFEMLV 194
PP HPASA Q N +E Y +VF+ ++
Sbjct: 27 PPHHPASAPPFQQ-SNPVESYDPAKEVFDPMM 57
>At3g02310.1 68416.m00213 developmental protein SEPALLATA2 / floral
homeotic protein (AGL4) (SEP2) identical to
developmental protein SEPALLATA2 / floral homeotic
protein AGL4 GB:P29384 [Arabidopsis thaliana], Pfam HMM
hit: SRF-type transcription factors (DNA-binding and
dimerization domain)
Length = 250
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 139 YSTTSNCIPLRHRYSRCWYAHDSVRVANRSLSHSENS 249
+ +TSN + RY +C Y S+ V N+ ENS
Sbjct: 57 FCSTSNMLKTLERYQKCSYG--SIEVNNKPAKELENS 91
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 126 RIQSLFNDIELYPTKTQVFEMLVCARQCARRKS 224
R S +E Y T + E VCA+ C R+K+
Sbjct: 539 RCGSTSRAVECYITTSSEAEKFVCAKPCGRKKN 571
>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 557
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 189 LVCARQCARRKSLTLTFGEFCVFAAELRRCSRQARQVXSKPES 317
L+ QC RR LT + C+ ++ CS Q +V S E+
Sbjct: 315 LMACEQCQRRFHLTCLKEDSCIVSSRGWFCSSQCNRVFSALEN 357
>At5g48300.1 68418.m05966 glucose-1-phosphate adenylyltransferase
small subunit 1 (APS1) / ADP-glucose pyrophosphorylase
(ADG1) identical to SP|P55228
Length = 520
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -1
Query: 238 NVRVSDLRRAHCRAHTSISNTCVLVGYNSMSLNR 137
N R+ D+ ++C +++IS VL +NS SLNR
Sbjct: 120 NYRLIDIPVSNC-LNSNISKIYVLTQFNSASLNR 152
>At5g41120.1 68418.m04999 esterase/lipase/thioesterase family
protein contains Interpro entry IPR000379
Length = 684
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 80 SARNLLCEAGSSIADRGGDGGP 15
S + L EAG + GGDGGP
Sbjct: 72 SLTDFLTEAGDFVNSDGGDGGP 93
>At5g19220.1 68418.m02289 glucose-1-phosphate adenylyltransferase
large subunit 1 (APL1) / ADP-glucose pyrophosphorylase
(ADG2) identical to SP|P55229
Length = 522
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = -1
Query: 232 RVSDLRRAHCRAHTSISNTCVLVGYNSMSLNRLWMRSADAG*SGGPTRHSQALATS 65
R+ D+ ++C ++ I+ +L YNS SLNR R+ ++ G + + LA +
Sbjct: 122 RLIDVPMSNC-INSGINKVYILTQYNSASLNRHLARAYNSNGLGFGDGYVEVLAAT 176
>At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 978
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 51 SSLTKEVASAWECRVGPPDHPASADRIQSLFNDI 152
+SLT SAW +G +A+R LF+D+
Sbjct: 529 NSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDM 562
>At1g80440.1 68414.m09419 kelch repeat-containing F-box family
protein similar to SP|Q9ER30 Kelch-related protein 1
(Sarcosin) {Rattus norvegicus}; contains Pfam profiles
PF01344: Kelch motif, PF00646: F-box domain
Length = 354
Score = 26.2 bits (55), Expect = 5.7
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Frame = +1
Query: 28 PPRSAMLLPASQRRLRAL--GSAAWG-LPII----QHLPIASRAYSTTSNCIPLRHRYSR 186
P S ++ + R+ L GS W LP I + LP+ R S S+ I L
Sbjct: 66 PAGSGKIIATPEYRISVLESGSGLWTELPPIPGQTKGLPLFCRLVSVGSDLIVLGGLDPI 125
Query: 187 CWYAHDSVRV 216
W AHDSV V
Sbjct: 126 TWQAHDSVFV 135
>At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|P28290 Sperm-specific
antigen 2 (Cleavage signal-1 protein) (CS-1) Homo
sapiens; contains Pfam profile PF00515: TPR Domain
Length = 649
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 98 PHAALPSARNLLCEAGSSIADRGGDGG 18
P A + A LLC+ S++A G +GG
Sbjct: 299 PAALINYAAELLCKHSSTVAGAGANGG 325
>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein similar to HepA-related
protein HARP [Homo sapiens] GI:6693791; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF01844: HNH
endonuclease
Length = 1190
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 298 TCLACLEHRRSSAANTQNSPNVRVSDLRRAHCRAHTSISNTCVLVGYNS 152
T LA E R+ S +++N R D R A CR ++ C GY +
Sbjct: 14 TRLAFAEKRKQSFDSSENPQ--RQQDFRLAKCRKLDGSNDVCPQEGYRN 60
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 53 QPHKGGCERLGVPRGASRSSSI-CRSHPEP 139
+P +GGC+ + VP G S I S EP
Sbjct: 3335 EPMEGGCDLINVPSGCSTEPQIQLSSSAEP 3364
>At1g22470.1 68414.m02808 expressed protein
Length = 146
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = +1
Query: 130 SRAYSTTSNCI-PLRHRYS 183
S YS+ S+C+ PL+HRYS
Sbjct: 105 SSYYSSVSSCLSPLQHRYS 123
>At5g52010.1 68418.m06454 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 396
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 261 AELRRCSRQARQVXSKPESPXWNIEKE 341
AELRR + V KP++ W ++++
Sbjct: 226 AELRRAGVYVKTVEDKPQAADWAVKRQ 252
>At5g44620.1 68418.m05467 cytochrome P450 family protein similar to
cytocrhome P450 monooxygenase (GI:14334057) [Gossypium
arboreum]
Length = 519
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 61 QRRLRALGSAAWGLPIIQHLPIASRAYSTTSNCIPLRH 174
+RR L WGLPII +LP T + +H
Sbjct: 40 KRRSPPLPPGPWGLPIIGNLPFLQPELHTYFQGLAKKH 77
>At4g37360.1 68417.m05291 cytochrome P450 family protein cytochrome
P450 monooxygenase, Arabidopsis thaliana, PID:d1029478
Length = 499
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 46 LLPASQRRLRALGSAAWGLPIIQHL 120
L+ +R+L S AW LP+I HL
Sbjct: 20 LIGRIKRKLNLPPSPAWALPVIGHL 44
>At4g32820.1 68417.m04668 expressed protein ; expression supported
by MPSS
Length = 1817
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 74 ERLGVPRGASRSS--SICRSHPEPIQRHRIVSH 166
E+ + RG R S S C +PI H +VS+
Sbjct: 372 EKFVLKRGFDRESAGSFCNEESDPISEHAVVSN 404
>At4g03670.1 68417.m00502 hypothetical protein
Length = 171
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -1
Query: 250 QNSPNVRVSDLRRAHCRAHTSISNTCVLVGYNSMSLNRLW 131
Q+S N R+S + S TCV GY RLW
Sbjct: 89 QDSKNPRLSQFLEFELKNTWGQSLTCVATGYTCDLFVRLW 128
>At1g80470.1 68414.m09425 F-box family protein contains F-box domain
Pfam:PF00646
Length = 464
Score = 25.4 bits (53), Expect = 10.0
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Frame = -3
Query: 260 CKHAEFSECESERFATRTLSCAYQH---LEYLCL 168
C HA FSE E F T C H LE+ CL
Sbjct: 323 CLHASFSESSWEMFPTFLGCCPNLHSLFLEFDCL 356
>At1g04700.1 68414.m00467 protein kinase family protein low
similarity to EDR1 [Arabidopsis thaliana] GI:11127925;
contains Pfam profile: PF00069 Eukaryotic protein kinase
domain
Length = 1042
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 86 LPSARNLLCEAGSSIADRGGDG 21
LP LLC G I R GDG
Sbjct: 118 LPEVLKLLCSFGGRILQRPGDG 139
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,369,677
Number of Sequences: 28952
Number of extensions: 143874
Number of successful extensions: 455
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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