Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0009
(578 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 283 6e-77
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 281 3e-76
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 154 4e-38
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 154 4e-38
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 153 6e-38
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 152 1e-37
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 152 1e-37
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 151 3e-37
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 150 6e-37
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 149 1e-36
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 149 2e-36
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 123 8e-29
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 121 3e-28
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 121 3e-28
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 120 5e-28
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 120 5e-28
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 120 5e-28
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 120 5e-28
At5g19920.1 68418.m02370 transducin family protein / WD-40 repea... 31 0.42
At3g53420.1 68416.m05895 plasma membrane intrinsic protein 2A (P... 29 1.7
At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family pr... 27 6.8
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 27 6.8
At5g60660.1 68418.m07613 major intrinsic family protein / MIP fa... 27 9.0
At5g03990.1 68418.m00379 expressed protein predicted protein, Ar... 27 9.0
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 283 bits (694), Expect = 6e-77
Identities = 129/183 (70%), Positives = 151/183 (82%)
Frame = +3
Query: 30 MPSEMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILEEFASAGSDRKDVFFYQADDDHY 209
MP E+ITLQ+GQCGNQIG EFWKQLC+EHGIS +GILE+FA+ G DRKDVFFYQADD HY
Sbjct: 1 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHY 60
Query: 210 IPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASGYAQGEKLNEEVFD 389
IPRA+L+DLEPRVI+ I N Y LYN EN++LS HGGGAGNNWASGY QG+ + EE+ D
Sbjct: 61 IPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQGKGVEEEIMD 120
Query: 390 IINREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLSDRFS*ETCSDIQCLPQT*MK*S 569
+I+READGSD+LEGFVLCHSIAGGTGSGMGSY+LE L+DR+S + P M+ S
Sbjct: 121 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQ-METS 179
Query: 570 DVV 578
DVV
Sbjct: 180 DVV 182
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 281 bits (688), Expect = 3e-76
Identities = 127/183 (69%), Positives = 151/183 (82%)
Frame = +3
Query: 30 MPSEMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILEEFASAGSDRKDVFFYQADDDHY 209
MP E+ITLQ+GQCGNQIG EFWKQLC+EHGIS +GILE+FA+ G DRKDVFFYQADD HY
Sbjct: 1 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHY 60
Query: 210 IPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASGYAQGEKLNEEVFD 389
IPRA+L+DLEPRVI+ I N Y LYN EN++++ HGGGAGNNWASGY QG+ + EE+ D
Sbjct: 61 IPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQGKGVEEEIMD 120
Query: 390 IINREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLSDRFS*ETCSDIQCLPQT*MK*S 569
+I+READGSD+LEGFVLCHSIAGGTGSGMGSY+LE L+DR+S + P M+ S
Sbjct: 121 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQ-METS 179
Query: 570 DVV 578
DVV
Sbjct: 180 DVV 182
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 154 bits (374), Expect = 4e-38
Identities = 67/159 (42%), Positives = 105/159 (66%), Gaps = 1/159 (0%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILEEFASAGSDRKDVFFYQADDDHYIPR 218
E++ +Q GQCGNQIG +FW+ +C EHGI G + +R DV+F +A Y+PR
Sbjct: 3 EILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYVPR 62
Query: 219 AVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDII 395
AVL+DLEP + ++ + P+ +++ P+N + GAGNNWA G Y +G +L + V D++
Sbjct: 63 AVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 396 NREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLSDRF 512
+EA+ SD L+GF +CHS+ GGTGSGMG+ ++ + + +
Sbjct: 121 RKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 154 bits (374), Expect = 4e-38
Identities = 67/160 (41%), Positives = 106/160 (66%), Gaps = 2/160 (1%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILE-EFASAGSDRKDVFFYQADDDHYIP 215
E++ +Q GQCGNQIG +FW+ +C EHG+ P G + A +R +V++ +A Y+P
Sbjct: 3 EILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRYVP 62
Query: 216 RAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDI 392
RAVL+DLEP + +I + PY +++ P+N + GAGNNWA G Y +G +L + V D+
Sbjct: 63 RAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 393 INREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLSDRF 512
+ +EA+ D L+GF +CHS+ GGTGSGMG+ ++ + + +
Sbjct: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 160
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 153 bits (372), Expect = 6e-38
Identities = 65/159 (40%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILEEFASAGSDRKDVFFYQADDDHYIPR 218
E++ +Q GQCGNQIG +FW+ +C EHGI P G + +R +V++ +A Y+PR
Sbjct: 3 EILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYVPR 62
Query: 219 AVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDII 395
A+L+DLEP + ++ PY +++ P+N + GAGNNWA G Y +G +L + V D++
Sbjct: 63 AILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDAVLDVV 120
Query: 396 NREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLSDRF 512
+EA+ D L+GF +CHS+ GGTGSGMG+ ++ + + +
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 152 bits (369), Expect = 1e-37
Identities = 65/159 (40%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILEEFASAGSDRKDVFFYQADDDHYIPR 218
E++ +Q GQCGNQIG +FW+ +C EHGI P G + +R +V++ +A ++PR
Sbjct: 3 EILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFVPR 62
Query: 219 AVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDII 395
AVL+DLEP + ++ + PY + + P+N + GAGNNWA G Y +G +L + V D++
Sbjct: 63 AVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 396 NREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLSDRF 512
+EA+ D L+GF +CHS+ GGTGSGMG+ ++ + + +
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 152 bits (369), Expect = 1e-37
Identities = 65/159 (40%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILEEFASAGSDRKDVFFYQADDDHYIPR 218
E++ +Q GQCGNQIG +FW+ +C EHGI P G + +R +V++ +A ++PR
Sbjct: 3 EILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFVPR 62
Query: 219 AVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDII 395
AVL+DLEP + ++ + PY + + P+N + GAGNNWA G Y +G +L + V D++
Sbjct: 63 AVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 396 NREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLSDRF 512
+EA+ D L+GF +CHS+ GGTGSGMG+ ++ + + +
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 151 bits (366), Expect = 3e-37
Identities = 64/159 (40%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILEEFASAGSDRKDVFFYQADDDHYIPR 218
E++ +Q GQCGNQIG +FW+ +C EHGI G + +R +V++ +A ++PR
Sbjct: 3 EILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFVPR 62
Query: 219 AVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDII 395
AVL+DLEP + ++ + PY +++ P+N + GAGNNWA G Y +G +L + V D++
Sbjct: 63 AVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 396 NREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLSDRF 512
+EA+ D L+GF +CHS+ GGTGSGMG+ ++ + + +
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 150 bits (364), Expect = 6e-37
Identities = 66/160 (41%), Positives = 105/160 (65%), Gaps = 2/160 (1%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILE-EFASAGSDRKDVFFYQADDDHYIP 215
E++ +Q GQCGNQIG +FW+ +C EHGI G + A +R +V++ +A Y+P
Sbjct: 3 EILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRYVP 62
Query: 216 RAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDI 392
RAVL+DLEP + +I + P+ +++ P+N + GAGNNWA G Y +G +L + V D+
Sbjct: 63 RAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 393 INREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLSDRF 512
+ +EA+ D L+GF +CHS+ GGTGSGMG+ ++ + + +
Sbjct: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 160
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 149 bits (361), Expect = 1e-36
Identities = 65/159 (40%), Positives = 103/159 (64%), Gaps = 1/159 (0%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILEEFASAGSDRKDVFFYQADDDHYIPR 218
E++ +Q GQCGNQIG +FW+ +C EHGI G +R +V+F +A Y+PR
Sbjct: 3 EILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYVPR 62
Query: 219 AVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDII 395
AVL+DLEP + ++ + P+ +++ P+N + GAGNNWA G Y +G +L + V D++
Sbjct: 63 AVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 396 NREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLSDRF 512
+EA+ D L+GF +CHS+ GGTGSGMG+ ++ + + +
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 149 bits (360), Expect = 2e-36
Identities = 64/159 (40%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILEEFASAGSDRKDVFFYQADDDHYIPR 218
E++ +Q GQCGNQIG +FW+ + +EHGI G + +R +V++ +A Y+PR
Sbjct: 3 EILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYVPR 62
Query: 219 AVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDII 395
AVL+DLEP + ++ + PY +++ P+N + GAGNNWA G Y +G +L + V D++
Sbjct: 63 AVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 396 NREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLSDRF 512
+EA+ D L+GF +CHS+ GGTGSGMG+ ++ + + +
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 123 bits (297), Expect = 8e-29
Identities = 60/161 (37%), Positives = 96/161 (59%), Gaps = 3/161 (1%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILEEFASAGS--DRKDVFFYQADDDHYI 212
E+I++ +GQ G Q+G W+ C+EHGI P+G + ++ G+ D + FF + ++
Sbjct: 3 EIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQHV 62
Query: 213 PRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFD 389
PRAV LDLEP VI + Y +L++PE + K A NN+A G Y G ++ + +
Sbjct: 63 PRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTVGREIVDTCLE 120
Query: 390 IINREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLSDRF 512
+ + AD L+GF++ +++ GGTGSG+GS +LE LS F
Sbjct: 121 RLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDF 161
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 121 bits (292), Expect = 3e-28
Identities = 59/158 (37%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILEEFASAG--SDRKDVFFYQADDDHYI 212
E+I++ +GQ G Q+G W+ C+EHGI P+G++ + G D + FF + ++
Sbjct: 3 EIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHV 62
Query: 213 PRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFD 389
PRAV +DLEP VI + Y +L++PE + K A NN+A G Y G+++ + D
Sbjct: 63 PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTVGKEIVDLCLD 120
Query: 390 IINREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLS 503
+ + AD L+GF++ +++ GGTGSG+GS +LE LS
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLS 158
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 121 bits (292), Expect = 3e-28
Identities = 59/158 (37%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILEEFASAG--SDRKDVFFYQADDDHYI 212
E+I++ +GQ G Q+G W+ C+EHGI P+G++ + G D + FF + ++
Sbjct: 3 EIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHV 62
Query: 213 PRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFD 389
PRAV +DLEP VI + Y +L++PE + K A NN+A G Y G+++ + D
Sbjct: 63 PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTVGKEIVDLCLD 120
Query: 390 IINREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLS 503
+ + AD L+GF++ +++ GGTGSG+GS +LE LS
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLS 158
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 120 bits (290), Expect = 5e-28
Identities = 60/158 (37%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGIL--EEFASAGSDRKDVFFYQADDDHYI 212
E I++ +GQ G Q+G W+ C+EHGI P+G + ++ G D + FF + ++
Sbjct: 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHV 62
Query: 213 PRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFD 389
PRAV +DLEP VI + Y +L++PE + K A NN+A G Y G+++ + D
Sbjct: 63 PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLD 120
Query: 390 IINREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLS 503
I + AD L+GF++ +++ GGTGSG+GS +LE LS
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLS 158
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 120 bits (290), Expect = 5e-28
Identities = 60/158 (37%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGIL--EEFASAGSDRKDVFFYQADDDHYI 212
E I++ +GQ G Q+G W+ C+EHGI P+G + ++ G D + FF + ++
Sbjct: 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHV 62
Query: 213 PRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFD 389
PRAV +DLEP VI + Y +L++PE + K A NN+A G Y G+++ + D
Sbjct: 63 PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLD 120
Query: 390 IINREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLS 503
I + AD L+GF++ +++ GGTGSG+GS +LE LS
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLS 158
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 120 bits (290), Expect = 5e-28
Identities = 60/158 (37%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGIL--EEFASAGSDRKDVFFYQADDDHYI 212
E I++ +GQ G Q+G W+ C+EHGI P+G + ++ G D + FF + ++
Sbjct: 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHV 62
Query: 213 PRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFD 389
PRAV +DLEP VI + Y +L++PE + K A NN+A G Y G+++ + D
Sbjct: 63 PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLD 120
Query: 390 IINREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLS 503
I + AD L+GF++ +++ GGTGSG+GS +LE LS
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLS 158
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 120 bits (290), Expect = 5e-28
Identities = 60/158 (37%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGIL--EEFASAGSDRKDVFFYQADDDHYI 212
E I++ +GQ G Q+G W+ C+EHGI P+G + ++ G D + FF + ++
Sbjct: 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHV 62
Query: 213 PRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFD 389
PRAV +DLEP VI + Y +L++PE + K A NN+A G Y G+++ + D
Sbjct: 63 PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLD 120
Query: 390 IINREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLS 503
I + AD L+GF++ +++ GGTGSG+GS +LE LS
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLS 158
>At5g19920.1 68418.m02370 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TipD protein (SP:O15736, PIR:T08602)
[Dictyostelium discoideum]; related to WD-repeat protein
RBAP1 (GI:9716495) [Zea mays]
Length = 656
Score = 31.5 bits (68), Expect = 0.42
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = -3
Query: 354 HILKPSCSLHPHHV*IDTHSQDCTI*HRVNS*SCV*HAAPDPAELLVVCSDHHQLDRKTH 175
H+L SC V D + T HR+++ C + P+P ++ +V + QLDR+
Sbjct: 503 HVL--SCGDDRRFVGFDAREEKVTFKHRLDN-RCT-NIMPNPRDVNLVMVNTRQLDRQLR 558
Query: 174 LYDQIPPMQTL 142
LYD P L
Sbjct: 559 LYDVRLPQTEL 569
>At3g53420.1 68416.m05895 plasma membrane intrinsic protein 2A
(PIP2A) / aquaporin PIP2.1 (PIP2.1) identical to plasma
membrane intrinsic protein 2A SP: P43286 from
[Arabidopsis thaliana]
Length = 287
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +3
Query: 210 IPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASGYAQGEKLNEEV 383
+PRA LL + + + I + K + ++ Y +++GGGA N+ A GY+ G L E+
Sbjct: 122 LPRA-LLYIIAQCLGAICGVGFVKAF--QSSYYTRYGGGA-NSLADGYSTGTGLAAEI 175
>At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family
protein / F-box family protein contains similarity to
F-box protein FBL2 GI:6010699 from [Rattus norvegicus];
contains Pfam profiles PF00514:
Armadillo/beta-catenin-like repeat, PF00646: F-box
domain
Length = 930
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -1
Query: 407 SLSVDYIKYFLIQFLPLSIS*SPVVPCTPTM 315
++++ +I+ F++ F+ I SPVV TPTM
Sbjct: 795 NMALKHIEAFVLSFIDPHIFESPVVSSTPTM 825
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 201 DHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVY 305
D Y P +L++ + T ++ +AK+YN ++Y
Sbjct: 1072 DKYNPATWMLEVTSESVETELDMDFAKIYNESDLY 1106
>At5g60660.1 68418.m07613 major intrinsic family protein / MIP
family protein similar to mipC protein GI:1657948 from
[Mesembryanthemum crystallinum]
Length = 291
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 294 ENVYLSKHGGGAGNNWASGYAQGEKLNEEV 383
++ Y +++GGGA N A GY +G L E+
Sbjct: 147 QSSYYTRYGGGA-NELADGYNKGTGLGAEI 175
>At5g03990.1 68418.m00379 expressed protein predicted protein,
Arabidopsis thaliana
Length = 302
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +3
Query: 174 DVFFYQADDDHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASGY 353
DV+ D D + ++LDLE + + + + LS GG G W +G+
Sbjct: 109 DVYIDDVDWDAEVDNELILDLERGPDPLTEEQEHVVILDA--LVLSGQYGGLG--WGTGW 164
Query: 354 AQGEKLNEE 380
E +NEE
Sbjct: 165 GDAEGINEE 173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,858,521
Number of Sequences: 28952
Number of extensions: 275540
Number of successful extensions: 884
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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