Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060093.seq
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06720.1 68414.m00714 expressed protein contains Pfam domain,...    81   9e-16
At1g75530.1 68414.m08778 forkhead-associated domain-containing p...    35   0.045
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf...    32   0.41 
At2g25760.2 68415.m03092 protein kinase family protein contains ...    31   0.55 
At2g25760.1 68415.m03091 protein kinase family protein contains ...    31   0.55 
At4g33620.1 68417.m04775 Ulp1 protease family protein low simila...    28   6.8  

>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
           PF04950: Protein of unknown function (DUF663)
          Length = 1147

 Score = 80.6 bits (190), Expect = 9e-16
 Identities = 35/55 (63%), Positives = 42/55 (76%)
 Frame = +2

Query: 509 VTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEXFEFLNICQVHG 673
           V  K+RR   +EC ND+N+M+D AK ADL LL+ D S+GFEME FEFLNI QVHG
Sbjct: 122 VQGKQRRFQFVECPNDINAMVDCAKVADLALLVVDGSYGFEMETFEFLNIMQVHG 176



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 25/83 (30%), Positives = 43/83 (51%)
 Frame = +3

Query: 261 RQRNPKAFAIQNAVRAERQFRRREDVISKKQHIPQVDKTPLEXXXXXXXXXXXXXXGKTT 440
           +Q+N KAF +++ V A++      +   K+ H+P++D+   E              GK+ 
Sbjct: 39  KQKNLKAFGVKSVVHAKKAKHHAAEKEQKRLHLPKIDRNYGEAPPFVVVVQGPPGVGKSL 98

Query: 441 LINNLIKSFIKTNVTNTDGPITM 509
           +I +L+K F K NV    GPIT+
Sbjct: 99  VIKSLVKEFTKQNVPEVRGPITI 121


>At1g75530.1 68414.m08778 forkhead-associated domain-containing
           protein / FHA domain-containing protein
          Length = 555

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 494 RSHYYVTSKKRRITLIECNNDVNSMIDIAKCADLVLLL--CDASFGFEMEXFE 646
           R+HYY T K+RR+ L E     N+ ID     +   L   CD  FGF+ E  E
Sbjct: 84  RTHYYTTRKRRRLELEESLKVNNNAIDEHLNVEEGNLFGECDDDFGFKFEDIE 136


>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 825

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 476 CFYEAFNQVVYECSLTDARWPYDSDHN 396
           CFYE+ ++V+  CS + +   YDSD N
Sbjct: 34  CFYESLDRVLSSCSCSTSNSDYDSDPN 60


>At2g25760.2 68415.m03092 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 676

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 491 RRSHYYVTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEXFE 646
           +R HY VT  +    + + N D   +  +A C DL  L+ DA  GF  + ++
Sbjct: 452 QRYHYNVTDTRLAQHIEKGNEDGLFISSVASCTDLWALIMDAGSGFTDQVYQ 503


>At2g25760.1 68415.m03091 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 673

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 491 RRSHYYVTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEXFE 646
           +R HY VT  +    + + N D   +  +A C DL  L+ DA  GF  + ++
Sbjct: 449 QRYHYNVTDTRLAQHIEKGNEDGLFISSVASCTDLWALIMDAGSGFTDQVYQ 500


>At4g33620.1 68417.m04775 Ulp1 protease family protein low
           similarity to SP|Q9BQF6 SUMO-1-specific protease 2 (EC
           3.4.22.-) (Sentrin-specific protease SENP7) {Homo
           sapiens}; contains Pfam profile PF02902: Ulp1 protease
           family, C-terminal catalytic domain
          Length = 783

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -2

Query: 443 ECSLTDARWPYDSDHNWRRFQRRLVYLGDVLFFGDNVFTPTELSFSSYSILNGESFRISL 264
           E S  +A  P    H       +++ + DV+ +GD   T ++L+FS  + +N ES  ++ 
Sbjct: 125 EVSTGEATNPASDPHEVDPENAQVLIIPDVIIYGDIYCTNSKLTFSR-NCMNVESSSVNA 183

Query: 263 TSARL--DWSI 237
           T       W+I
Sbjct: 184 TKGTFSCQWTI 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,070,918
Number of Sequences: 28952
Number of extensions: 237348
Number of successful extensions: 626
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)