Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060089.seq
(692 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 96 2e-20
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 88 5e-18
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 88 5e-18
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 69 2e-12
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 69 2e-12
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 68 7e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 68 7e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 68 7e-12
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 66 3e-11
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 64 1e-10
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 57 1e-08
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 52 3e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 49 3e-06
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 48 4e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 48 8e-06
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 47 1e-05
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 45 4e-05
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 44 7e-05
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 44 1e-04
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 43 2e-04
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 43 2e-04
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 43 2e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 42 3e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 42 4e-04
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 42 5e-04
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 42 5e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 42 5e-04
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 42 5e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 41 9e-04
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 41 9e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 40 0.001
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 40 0.002
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 40 0.002
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 40 0.002
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 40 0.002
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 39 0.003
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 38 0.006
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 38 0.008
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 38 0.008
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 38 0.008
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 37 0.011
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 36 0.019
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 36 0.019
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 36 0.025
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 36 0.025
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 35 0.059
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 32 0.31
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 32 0.31
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 32 0.31
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 32 0.41
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 31 0.55
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 31 0.55
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 31 0.96
At1g47330.1 68414.m05240 expressed protein contains Pfam profile... 31 0.96
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 30 1.3
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 30 1.3
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 30 1.3
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 30 1.3
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 30 1.3
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 30 1.7
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote... 29 3.9
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 29 3.9
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 29 3.9
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 29 3.9
At5g48950.2 68418.m06055 thioesterase family protein contains Pf... 27 8.9
At2g25460.1 68415.m03049 expressed protein 27 8.9
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 95.9 bits (228), Expect = 2e-20
Identities = 45/91 (49%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Frame = +3
Query: 246 SPR-WDSVSLQPFNKNFYDPHPTVLKRSPYEVEXYRNNHEVTVSGVEVXNPIQYFEEANF 422
SPR D L PF KNFY P V + EVE YR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 423 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
PDYV + VK G+ EPTPIQ+QGWP+AM R
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGR 137
Score = 80.6 bits (190), Expect = 9e-16
Identities = 37/52 (71%), Positives = 43/52 (82%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAADF 687
+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA IQQ A+ F
Sbjct: 144 ETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKF 195
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 88.2 bits (209), Expect = 5e-18
Identities = 37/89 (41%), Positives = 57/89 (64%)
Frame = +3
Query: 249 PRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEXYRNNHEVTVSGVEVXNPIQYFEEANFPD 428
P+ + +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 429 YVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + + +G+ EPTPIQAQGWP+A+ R
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
Score = 72.5 bits (170), Expect = 2e-13
Identities = 32/52 (61%), Positives = 42/52 (80%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAADF 687
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA IQ+ + F
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKF 261
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 88.2 bits (209), Expect = 5e-18
Identities = 37/89 (41%), Positives = 57/89 (64%)
Frame = +3
Query: 249 PRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEXYRNNHEVTVSGVEVXNPIQYFEEANFPD 428
P+ + +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 429 YVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + + +G+ EPTPIQAQGWP+A+ R
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
Score = 72.5 bits (170), Expect = 2e-13
Identities = 32/52 (61%), Positives = 42/52 (80%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAADF 687
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA IQ+ + F
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKF 261
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/45 (64%), Positives = 36/45 (80%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXI 666
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL Q I
Sbjct: 441 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485
Score = 62.1 bits (144), Expect = 3e-10
Identities = 29/84 (34%), Positives = 44/84 (52%)
Frame = +3
Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEXYRNNHEVTVSGVEVXNPIQYFEEANFPDYVQQG 443
+ +PF KNFY + + + V YR E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 444 VKTMGYKEPTPIQAQGWPIAMSER 515
+K + Y++P PIQAQ PI MS R
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGR 434
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/45 (64%), Positives = 36/45 (80%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXI 666
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL Q I
Sbjct: 574 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 618
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/84 (33%), Positives = 44/84 (52%)
Frame = +3
Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEXYRNNHEVTVSGVEVXNPIQYFEEANFPDYVQQG 443
+ +PF KNFY + + + EV YR E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 444 VKTMGYKEPTPIQAQGWPIAMSER 515
+K + Y++P PIQ Q PI MS R
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGR 567
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/72 (44%), Positives = 40/72 (55%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEXYRNNHEVTVSGVEVXNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 479
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSER 515
QAQ WPIAM R
Sbjct: 185 QAQSWPIAMQGR 196
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/52 (50%), Positives = 33/52 (63%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAADF 687
+TGSGKTL Y++P +H+ R GP LVL+PTRELA IQ+ A F
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKF 253
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/72 (44%), Positives = 40/72 (55%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEXYRNNHEVTVSGVEVXNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 479
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSER 515
QAQ WPIAM R
Sbjct: 185 QAQSWPIAMQGR 196
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/52 (50%), Positives = 33/52 (63%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAADF 687
+TGSGKTL Y++P +H+ R GP LVL+PTRELA IQ+ A F
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKF 253
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/72 (44%), Positives = 40/72 (55%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEXYRNNHEVTVSGVEVXNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 479
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSER 515
QAQ WPIAM R
Sbjct: 185 QAQSWPIAMQGR 196
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/52 (50%), Positives = 33/52 (63%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAADF 687
+TGSGKTL Y++P +H+ R GP LVL+PTRELA IQ+ A F
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKF 253
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 65.7 bits (153), Expect = 3e-11
Identities = 28/85 (32%), Positives = 45/85 (52%)
Frame = +3
Query: 261 SVSLQPFNKNFYDPHPTVLKRSPYEVEXYRNNHEVTVSGVEVXNPIQYFEEANFPDYVQQ 440
S+ +P NK+FY+ ++ + E YR + VSG +V P++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 441 GVKTMGYKEPTPIQAQGWPIAMSER 515
+K Y++PT IQ Q PI +S R
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGR 266
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAADF 687
+TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA I A F
Sbjct: 273 KTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKF 324
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 63.7 bits (148), Expect = 1e-10
Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +3
Query: 282 NKNFYDPH----PTVLKRSPYEVEXYRNNHEVTVSGVEVXNPIQYFEEANFPDYVQQGVK 449
NK+ PH P V SP VE YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSP--VEIYRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 450 TMGYKEPTPIQAQGWPIAMSER 515
+ G+ PTPIQAQ WPIA+ R
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSR 473
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/52 (50%), Positives = 34/52 (65%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAADF 687
+TGSGKTL Y++PA + + + R +GP L+LAPTRELA IQ A F
Sbjct: 480 KTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRF 530
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 3/55 (5%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQXIQQVAADF 687
+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQ I++ F
Sbjct: 358 ETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKF 412
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/93 (21%), Positives = 48/93 (51%)
Frame = +3
Query: 237 EHASPRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEXYRNNHEVTVSGVEVXNPIQYFEEA 416
E A+ +DS ++ ++++ D + + + +R + ++ G + P++ +EE+
Sbjct: 262 EEAADTYDSFDMR-VDRHWSDKRLEEMTERDWRI--FREDFNISYKGSRIPRPMRSWEES 318
Query: 417 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + V+ GYK+P+PIQ P+ + +R
Sbjct: 319 KLTSELLKAVERAGYKKPSPIQMAAIPLGLQQR 351
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/75 (33%), Positives = 41/75 (54%)
Frame = +3
Query: 291 FYDPHPTVLKRSPYEVEXYRNNHEVTVSGVEVXNPIQYFEEANFPDYVQQGVKTMGYKEP 470
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 471 TPIQAQGWPIAMSER 515
TPIQ QG P+ +S R
Sbjct: 121 TPIQVQGLPVVLSGR 135
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQXIQQVAADF 687
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+ V F
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQF 196
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQXIQQVAADF 687
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+ +V F
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQF 245
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEXYRNNHEVTVSGVEVXNPIQYFEEANFPDYVQQGVKTMGYKEPT 473
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 474 PIQAQGWPIAMSER 515
PIQ QG P+ ++ R
Sbjct: 171 PIQVQGLPVILAGR 184
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/52 (50%), Positives = 32/52 (61%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAADF 687
+TGSGKTL Y++P +H+ R GP LVL+PTRELA IQ A F
Sbjct: 274 KTGSGKTLGYLIPGFMHLQRIHNDSR-MGPTILVLSPTRELATQIQVEALKF 324
Score = 35.9 bits (79), Expect = 0.025
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 444 VKTMGYKEPTPIQAQGWPIAMSER 515
V + G+ P+PIQAQ WPIAM R
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNR 267
Score = 31.5 bits (68), Expect = 0.55
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 339 EXYRNNHEVTVSGVEVXNPIQYFEEANFPD 428
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 47.6 bits (108), Expect = 8e-06
Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Frame = +1
Query: 526 RXQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQXIQQVAADF 687
R +TG GKTLA++LP + + N P + G P LVL PTRELA +QVAADF
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELA---KQVAADF 194
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQXIQQ 672
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL + +
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYE 122
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +1
Query: 526 RXQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQXIQQ 672
R +TG+GKTLA+ +P I I RG P+ LVLAPTRELA+ +++
Sbjct: 147 RARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK 196
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQXIQQV 675
+TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA I V
Sbjct: 159 KTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDV 210
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 363 VTVSGVEVXN--PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
VT GVE ++ F E+N P+ V KT +++P+PIQ+ WP + R
Sbjct: 102 VTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGR 152
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQXIQQVAADF 687
QTGSGKT A+ P I I ++R G P+A++L+PTRELA I A F
Sbjct: 204 QTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKF 260
Score = 34.3 bits (75), Expect = 0.078
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Frame = +3
Query: 255 WD--SVSLQPFNKNFYDPHPTVLKRSPYEVEXYR-NNHEVTVSGVEVXNPIQYFEEANFP 425
WD + PF + +P P ++ + + + SG V P+ F E +
Sbjct: 108 WDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLG 167
Query: 426 DYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + ++ Y +PTP+Q PI + R
Sbjct: 168 EALNLNIRRCKYVKPTPVQRHAIPILLEGR 197
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = +1
Query: 511 KEFSWRXQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELA 657
K+ + +TG+GKT+A++LPAI + PP R I LV+ PTRELA
Sbjct: 420 KDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELA 471
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 526 RXQTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQXIQQ 672
R +TG+GKTLA+ +P I I RG P LVLAPTRELA+ +++
Sbjct: 159 RARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK 208
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQXIQQVAADF 687
QTGSGKT A+ P I I I R G P+A++L+PTRELA I A F
Sbjct: 191 QTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKF 247
Score = 33.1 bits (72), Expect = 0.18
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Frame = +3
Query: 255 WD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEXYRNNHEVTVSGVEVXNPIQYFEEANFP 425
WD PF N DP + + E Y + + SG V P+ F E +
Sbjct: 96 WDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLG 154
Query: 426 DYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + ++ Y +PTP+Q PI + R
Sbjct: 155 EALNLNIQRCKYVKPTPVQRNAIPILAAGR 184
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +1
Query: 511 KEFSWRXQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQXI 666
K+ R +TGSGKTLAY+LP + + + + ++ P A +L P+REL Q +
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Frame = +1
Query: 511 KEFSWRXQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELA 657
K+ + +TG+GKT+A++LP+I + PP R + I LV+ PTRELA
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELA 169
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQXIQQVAADF 687
QTGSGKT A+ P I I + R G P A++L+PTRELA I A F
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF 252
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 363 VTVSGVEVXNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ER
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQXIQQVAADF 687
QTGSGKT A+ P I I + R G P A++L+PTRELA I A F
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF 252
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 363 VTVSGVEVXNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ER
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +3
Query: 348 RNNHEVTVSGVEVXNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +S R
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 35.1 bits (77), Expect = 0.045
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 657
TGSGKT A+I P ++ + DG A++L+P RELA
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELA 223
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQXIQQVAADF 687
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ I +VA F
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPF 113
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 40.7 bits (91), Expect = 9e-04
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +1
Query: 511 KEFSWRXQTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELA 657
K+ + +TG+GKT+A++LP+I + PP + PI ALV+ PTRELA
Sbjct: 92 KDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELA 143
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 40.7 bits (91), Expect = 9e-04
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +1
Query: 508 RKEFSWRXQTGSGKTLAYILPAIVHINNQPPIRRGD-----GPIALVLAPTRELAQXIQQ 672
RK TGSGKTLAY+LP IV + + G P +VL PTREL++ + +
Sbjct: 149 RKSVVLGSHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYR 207
Query: 673 VA 678
VA
Sbjct: 208 VA 209
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/52 (36%), Positives = 33/52 (63%)
Frame = +1
Query: 502 LCRKEFSWRXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 657
LC ++ +TGSGKTLA+++P + ++ + DG ++++PTRELA
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELA 156
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQXIQQVA 678
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ I +VA
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Frame = +1
Query: 526 RXQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQXIQQ 672
R +TG+GKTLA+ +P I + + RR G P LVLAPTRELA+ +++
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEK 198
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQXIQQVA 678
TGSGKT ++++P I +++ P + P+A+VLAPTREL ++ A
Sbjct: 156 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQA 206
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 324 SPYEVEXYRNNHEVTVSGV--EVXNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 497
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 498 IAMSERI*LAXSN 536
A++ + LA ++
Sbjct: 143 AALTGKSLLASAD 155
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQXIQQVA 678
TGSGKT ++++P I +++ P + P+A+VLAPTREL ++ A
Sbjct: 19 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQA 69
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +1
Query: 532 QTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAAD 684
+TGSGKTLA+++PA+ + + R G G +V+ PTRELA + VA +
Sbjct: 134 RTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEE 183
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA-QXIQQVAA 681
QTGSGKT A+ LP I+H + P G ALV+ PTRELA Q +Q A
Sbjct: 103 QTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAEQFKA 148
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 657
+TGSGKTLA+++PA V + + +G LV+ PTRELA
Sbjct: 199 RTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELA 239
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 660
+TGSGKT A+++P + + P +G G AL+L+PTR+LA+
Sbjct: 73 RTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAE 112
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 509
FE N V +K GYK PTPIQ + P+ +S
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILS 64
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +1
Query: 526 RXQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQXI 666
+ +TG+GK++A++LPAI + N+ + + AL+L PTRELA I
Sbjct: 371 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Frame = +1
Query: 502 LCR-KEFSWRXQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQXIQ 669
LC K+ + TGSGKTLA+++P + + PP + + ++++PTREL+ I
Sbjct: 50 LCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIY 107
Query: 670 QVAADF 687
VA F
Sbjct: 108 NVAQPF 113
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 36.3 bits (80), Expect = 0.019
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQV 675
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA ++ V
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQXI 666
Q+GSGKTLAY++P I + Q + G P +VL PT ELA +
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +3
Query: 366 TVSGVEVXNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
TV GV F E N + + +T+GYK+PTPIQA P+A++ R
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
Score = 35.5 bits (78), Expect = 0.034
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQV 675
TGSGKT A+ LP + + +P +R L+L PTRELA I +
Sbjct: 213 TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSM 257
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = +1
Query: 526 RXQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQXI 666
+ +TG+GK++A++LPAI + N+ + + L+L PTRELA I
Sbjct: 418 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 34.7 bits (76), Expect = 0.059
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVA 678
QTGSGKTL Y+L IN Q A+++ PTREL + +VA
Sbjct: 121 QTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 32.3 bits (70), Expect = 0.31
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQXIQQ 672
QTGSGKT A+ +P + + +++P R P A VL+PTRELA I +
Sbjct: 54 QTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAE 107
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 526 RXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAAD 684
R + G+GKT A+ +P + I+ + + A+++ PTRELA QV +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKE 221
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LAXS-NG 539
FE+ + G+ G++ P+PIQ + PIA++ R LA + NG
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNG 178
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 526 RXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAAD 684
R + G+GKT A+ +P + I+ + + A+++ PTRELA QV +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKE 221
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LAXS-NG 539
FE+ + G+ G++ P+PIQ + PIA++ R LA + NG
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNG 178
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 31.9 bits (69), Expect = 0.41
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +1
Query: 526 RXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAAD 684
R + G+GKT A+ +P + I+ + + + A++L PTRELA QV +
Sbjct: 197 RAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKE 244
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 509
FE+ + +G+ G+++P+PIQ + PIA++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALT 190
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 526 RXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAAD 684
R + G+GKT A+ +P + I+ + + A++L PTRELA QV +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 509
FE+ + +G+ G+++P+PIQ + PIA++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALT 160
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 526 RXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAAD 684
R + G+GKT A+ +P + I+ + + A++L PTRELA QV +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 509
FE+ + +G+ G+++P+PIQ + PIA++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALT 160
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 30.7 bits (66), Expect = 0.96
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +1
Query: 538 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQV 675
GSGKT ++L + ++ P +R P AL + PTRELA +V
Sbjct: 141 GSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEV 181
>At1g47330.1 68414.m05240 expressed protein contains Pfam profile
PF01595: Domain of unknown function
Length = 527
Score = 30.7 bits (66), Expect = 0.96
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 409 KKQIFLIMCNKV*RQWVTKNRRLFKLKAGR*LCRKEFSWRXQTGSGKTLAYILPA 573
K ++F C K Q+ + +FK++ G K + Q GSGKT PA
Sbjct: 332 KDELFKDSCRKPKAQFEVSEKEVFKIETGDAKSGKSENGEEQQGSGKTSLLAAPA 386
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +1
Query: 625 ALVLAPTRELAQXIQQV 675
ALVLAPTRELAQ I++V
Sbjct: 110 ALVLAPTRELAQQIEKV 126
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +1
Query: 625 ALVLAPTRELAQXIQQV 675
ALVLAPTRELAQ I++V
Sbjct: 112 ALVLAPTRELAQQIEKV 128
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +1
Query: 625 ALVLAPTRELAQXIQQV 675
ALVLAPTRELAQ I++V
Sbjct: 110 ALVLAPTRELAQQIEKV 126
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 393 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 482
PI+ F++ D V +GV GYK+P+ IQ
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQ 49
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQXI 666
TGSGKTLAY+LP + I R A+++AP+REL I
Sbjct: 156 TGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 188 LEDLEDLVGKKNSLEVRTCVAQMGFCFTPTF 280
+ D++ +GK V C A+MG CF+ T+
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTY 560
>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 - Oryza sativa,
PIR:A57676
Length = 1011
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 431 CATRCKDNGLQRTDAYSSSRLADSYVGKNLVGVXKR 538
C T + GL+ + Y ++RLA S V K L+ + +R
Sbjct: 966 CLTLVLEVGLRCCEEYPTNRLATSEVAKELISIRER 1001
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEXYRNNHE-VTVSGVEVXNPIQYFEEANFPDYVQQGVKTMGYKEP 470
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 471 TPIQAQGWPIAMSE 512
+P++ + P+ S+
Sbjct: 232 SPVRDEYAPVIFSQ 245
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEXYRNNHE-VTVSGVEVXNPIQYFEEANFPDYVQQGVKTMGYKEP 470
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 471 TPIQAQGWPIAMSE 512
+P++ + P+ S+
Sbjct: 255 SPVRDEYAPVIFSQ 268
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEXYRNNHE-VTVSGVEVXNPIQYFEEANFPDYVQQGVKTMGYKEP 470
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 471 TPIQAQGWPIAMSE 512
+P++ + P+ S+
Sbjct: 232 SPVRDEYAPVIFSQ 245
>At5g48950.2 68418.m06055 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein
Length = 127
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 531 SNGFRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSAS 674
++GF++ G+HL+ H H +P A E +++ F + + + T + S
Sbjct: 66 ASGFKRVAGIHLSIH--HLRPAALGEIVFAESFPVSVGKNIQTEDLKS 111
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 8.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 163 ETNYRRICCLLQIWNHRFHGYY 98
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,367,884
Number of Sequences: 28952
Number of extensions: 262616
Number of successful extensions: 810
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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