Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060077.seq
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide...    32   0.31 
At1g11090.1 68414.m01270 hydrolase, alpha/beta fold family prote...    32   0.31 
At5g36920.1 68418.m04425 expressed protein predicted protein, Ar...    29   2.9  
At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to ...    29   2.9  
At4g36010.1 68417.m05127 pathogenesis-related thaumatin family p...    28   5.1  
At2g17860.1 68415.m02069 pathogenesis-related thaumatin family p...    28   5.1  
At5g44650.1 68418.m05471 expressed protein                             28   6.8  
At2g04080.1 68415.m00391 MATE efflux family protein similar to h...    28   6.8  
At1g34170.1 68414.m04238 transcriptional factor B3 family protei...    28   6.8  
At2g24810.1 68415.m02968 pathogenesis-related thaumatin family p...    27   8.9  

>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
           identical to like heterochromatin protein LHP1
           [Arabidopsis thaliana] GI:15625407; contains Pfam
           profile PF00385: 'chromo' (CHRromatin Organization
           MOdifier)
          Length = 445

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +2

Query: 383 IKQPEWPSSPAMWDLVKNTPELADFVFIFDHTEKMGKKMADRRHRRLQATTQQFQRAKKD 562
           IK   WP +   W+ ++N   +AD +  F+ + K GK    R+ +R  A     Q  KK 
Sbjct: 127 IKWRGWPETANTWEPLENLQSIADVIDAFEGSLKPGK--PGRKRKRKYAGPHS-QMKKKQ 183

Query: 563 RL 568
           RL
Sbjct: 184 RL 185


>At1g11090.1 68414.m01270 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 324

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +3

Query: 402 LVARPCGIW*KTRPNWQILCSFLITLKRWVKKW---PTDDIVVFKRQRSNSSEQKK 560
           LVA  C I  K RP W +   FLI + R++  W   PT+D++    ++S   E+KK
Sbjct: 161 LVAPMCKISDKVRPKWPV-DQFLIMISRFLPTWAIVPTEDLL----EKSIKVEEKK 211


>At5g36920.1 68418.m04425 expressed protein predicted protein,
           Arabidopsis thaliana; expression supported by MPSS
          Length = 82

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 599 NSAKFALVSTAVCLFLLAGIAALSLEDDDVVGRPFFYPSFQC 474
           N++   L+S  +CL  + G+   S+ DDD+    +  PS  C
Sbjct: 5   NTSHVLLLSLLLCLMFVIGLVEASIPDDDMGPAIYTPPSGSC 46


>At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to
           GP:3172044:gnl:PID:d1029570:AB010080
          Length = 1332

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = -3

Query: 508 SVGHFFTHLFSVIKNEHKICQF-GRVFHQIPHGRATRPLGLLDLSVPTVKQNVFIVVNHL 332
           +VG+ F   + +I++ H+IC       H   H    + L  L  S   ++ N F  +   
Sbjct: 509 AVGYLFEFFYPLIESGHRICSLDSGNKHNNSHVDTVKSLPFLSSSQQVLESNEFKPIGEA 568

Query: 331 LLAFGHFAFVLHDRHYVEDI 272
           ++  G       +  +V+DI
Sbjct: 569 VIKVGAALQASGEAVFVDDI 588


>At4g36010.1 68417.m05127 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 301

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 145 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCDEDT 17
           E CCSG F   D CKP +      +     CP A+ +  D+ T
Sbjct: 196 EYCCSGAFGTPDTCKPSEYSQFFKNA----CPRAYSYAYDDGT 234


>At2g17860.1 68415.m02069 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 253

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 145 EDCCSGMFTMFDFCKPLKRPACILDDIFF--*CPTAWQFVCDEDT 17
           E CC+G F   D C+P +        +FF   CPTA+ +  D+ T
Sbjct: 195 EFCCNGAFGTPDTCQPSEY------SVFFKKTCPTAYSYAYDDGT 233


>At5g44650.1 68418.m05471 expressed protein
          Length = 280

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 495 KWPTDDIVVFKRQRSNSSEQKKTDCG 572
           +WP  ++ V K+QR  S   K TD G
Sbjct: 190 RWPNLEVEVSKKQRGKSMYAKSTDTG 215


>At2g04080.1 68415.m00391 MATE efflux family protein similar to
           hypothetical protein GB:AAC27412; contains Pfam profile
           PF01554: Uncharacterized membrane protein family
          Length = 476

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 342 TTINTFCLTVGTLRSSSPSGLVA 410
           T++ + CLT+GTL    PSG+ A
Sbjct: 287 TSVLSICLTIGTLHYVIPSGVAA 309


>At1g34170.1 68414.m04238 transcriptional factor B3 family protein
           contains Pfam profile: PF02362 B3 DNA binding domain;
           contains non-consensus GA donor splice site at intron 12
          Length = 623

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = +2

Query: 239 YCKFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAM 418
           Y KF++  N NYI+     MQ E K    K+    +   I  N      K  EW S    
Sbjct: 279 YDKFVDAMNNNYIVGSRFRMQFEGKDFSEKR---YDGTIIGVNDMSPHWKDSEWRSLKVQ 335

Query: 419 WD 424
           WD
Sbjct: 336 WD 337


>At2g24810.1 68415.m02968 pathogenesis-related thaumatin family
           protein similar to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile PF00314:
           Thaumatin family
          Length = 193

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 145 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCD 26
           E CC+G F+  + C P K            CPTA+ +V D
Sbjct: 139 EYCCTGAFSKPETCPPTKYSKIFKGA----CPTAYSYVYD 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,411,247
Number of Sequences: 28952
Number of extensions: 331577
Number of successful extensions: 1025
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)