Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060065.seq
(694 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 122 2e-28
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 122 2e-28
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 2.2
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 29 2.9
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 29 2.9
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 29 3.9
At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like... 29 3.9
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 5.1
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s... 28 5.1
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 28 6.8
At3g12430.1 68416.m01548 expressed protein ; expression supporte... 28 6.8
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 28 6.8
At3g07890.1 68416.m00964 RabGAP/TBC domain-containing protein si... 27 8.9
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 27 8.9
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 122 bits (295), Expect = 2e-28
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = +3
Query: 255 SKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 428
SK+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 61 SKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 118
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/60 (46%), Positives = 39/60 (65%)
Frame = +1
Query: 511 GHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLXAWSDILKVYKSQRLRAGXGKMRNRR 690
GH IE +PE+PLVV+D + + KT A+ L+++ A+ D K S +R G GKMRNRR
Sbjct: 147 GHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRR 206
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +1
Query: 94 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVARR 264
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY V+++
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKK 63
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 122 bits (295), Expect = 2e-28
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = +3
Query: 255 SKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 428
SK+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 60 SKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 117
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/60 (46%), Positives = 39/60 (65%)
Frame = +1
Query: 511 GHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLXAWSDILKVYKSQRLRAGXGKMRNRR 690
GH IE +PE+PLVV+D + + KT A+ L+++ A+ D K S +R G GKMRNRR
Sbjct: 146 GHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRR 205
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Frame = +1
Query: 85 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVA 258
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY V+
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 259 RR 264
++
Sbjct: 61 KK 62
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 109 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 255
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 399 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 280
R++ H + +H D + E+HHH H R+H ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 399 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 280
R++ H + +H D + E+HHH H R+H ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +3
Query: 234 LEAALLRSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAP 404
+ AL+R + G + +AE + + + ++P G G G+ G FGN GG F
Sbjct: 76 MAVALIR-RRMGAKPTAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134
Query: 405 TKPW 416
W
Sbjct: 135 ISKW 138
>At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like
protein kinase GB:CAB16796 GI:4006878 from [Arabidopsis
thaliana]
Length = 359
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +3
Query: 240 AALLRSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK 410
A+LL S + +Q + + W AV R GGG ++ A GN+ G FA K
Sbjct: 297 ASLLESIKTCYQAAGQRWPNFIAVDFYKRSDGGGAPQAVDVANGNLICGCDNFAACK 353
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 160 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 255
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 160 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 255
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 587 CLVLLISWTLSATTKGSSGIFS 522
CLVLL+S +A TK SGIF+
Sbjct: 9 CLVLLVSILRAAVTKPDSGIFT 30
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 387 HHDTCYRRHPDRTYEYHHHGHAEF 316
HH Y H Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At3g12430.1 68416.m01548 expressed protein ; expression supported
by MPSS
Length = 238
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 163 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPLKY 50
G W+H SH+ ++ L VG+ + Y+S + P++Y
Sbjct: 38 GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 389 TYVRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVQAEDTLLKRFPS 538
T ++P + A +P PT S L ++ ++G P + ED KR PS
Sbjct: 1996 TDIKPETSAATTSPVSTAPTTSSTLASAITSSGAP---ETEDP--KRAPS 2040
>At3g07890.1 68416.m00964 RabGAP/TBC domain-containing protein
similar to plant adhesion molecule 1 [Arabidopsis
thaliana] GI:3511223; contains Pfam profile PF00566: TBC
domain
Length = 400
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 416 AALAPSRQPPTAESGLGGSVAATGVPALVQAEDTLLKRFPSFPWL 550
AA S P + S L +V PA Q + L + FP PWL
Sbjct: 132 AAKKKSTVPESYYSDLTKAVEGMVTPATRQIDHDLPRTFPGHPWL 176
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -2
Query: 387 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 304
HHD + H D +++ HH H H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,182,758
Number of Sequences: 28952
Number of extensions: 291945
Number of successful extensions: 980
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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