Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021015
         (778 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family...    29   4.5  
At5g58450.1 68418.m07320 expressed protein predicted proteins fr...    28   6.0  
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont...    28   7.9  
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi...    28   7.9  

>At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family
           protein
          Length = 558

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +2

Query: 602 VQNLSEQDLRNLDLSRINEVQLQNLRTDIPLHHESNV--SQGGRQLDQELMQAES 760
           ++ L E+ + N  L +  ++Q+ NL+T++     SNV      R+L Q+L+ AE+
Sbjct: 118 MEELEEKLVVNESLIKDLQLQVLNLKTELEEARNSNVELELNNRKLSQDLVSAEA 172


>At5g58450.1 68418.m07320 expressed protein predicted proteins from
           D.melanogaster, C.elegans and S.pombe
          Length = 1065

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 518 RHEEALRNLDVTLFRNELELQNNLSQALVQNLSEQDLRNLDLSRINEVQLQNLRTDIPLH 697
           RH    + ++  LF+  L+  N    A V+    Q  +N D     E  L+NL++ + L 
Sbjct: 649 RHRNYSKVIEFVLFKQRLQHSNQYQAARVEASVLQLKQNADSFEEEERILENLKSGVQLV 708

Query: 698 HESN 709
             SN
Sbjct: 709 ELSN 712


>At1g58190.1 68414.m06605 leucine-rich repeat family protein contains
            leucine rich-repeat (LRR) domains Pfam:PF00560,
            INTERPRO:IPR001611; contains similarity to Cf-2.2
            [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 1784

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 512  NLRHEEALRNLDVTLFRNELELQN-NLSQALVQNLSEQDLRNLDLSRINEVQLQNLRTDI 688
            NL H  +L  L    F N  ++++ +LS  L++    QDL  LD   +  V   NL   I
Sbjct: 1627 NLSHN-SLSGLIPQSFSNLTDIESIDLSFNLLRGPIPQDLSKLDYMVVFNVSYNNLSGSI 1685

Query: 689  PLH 697
            P H
Sbjct: 1686 PSH 1688


>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
           to CREB-binding protein GB:AAC51770 GI:2443859 from
           [Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
           profile; contains Pfam PF00569: Zinc finger, ZZ type
           domain; identical to histone acetyltransferase HAC4
           (GI:14794966) {Arabidopsis thaliana}
          Length = 1456

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 219 NGFCEKRRT*CREENYKMYMDSLQKHQLESEYHTQISMEQLHQAMQSSL 365
           N F +KRRT  R   Y +     ++HQ+  +   Q   +++  A Q +L
Sbjct: 32  NNFIKKRRTALRNRIYAIVRHKQKQHQIFLDKKNQQQQQRVDDATQRAL 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,801,070
Number of Sequences: 28952
Number of extensions: 316946
Number of successful extensions: 840
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)