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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021011
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ...   112   2e-25
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica...   105   2e-23
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica...   105   2e-23
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ...    81   8e-16
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ...    81   8e-16
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ...    81   8e-16
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila...    81   1e-15
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar...    80   1e-15
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...    78   7e-15
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila...    77   1e-14
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar...    73   2e-13
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar...    69   3e-12
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila...    62   5e-10
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar...    61   7e-10
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    60   1e-09
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ...    59   4e-09
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ...    59   4e-09
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar...    57   1e-08
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s...    56   3e-08
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA...    55   4e-08
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he...    54   1e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)...    53   2e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id...    52   3e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative           52   5e-07
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden...    50   2e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c...    48   7e-06
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c...    48   7e-06
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila...    48   7e-06
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)...    46   4e-05
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co...    46   4e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim...    45   5e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila...    45   5e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)...    45   6e-05
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila...    44   8e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila...    44   1e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ...    43   3e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ...    42   3e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai...    42   3e-04
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai...    42   4e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai...    42   6e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)       41   8e-04
At1g72730.1 68414.m08410 eukaryotic translation initiation facto...    40   0.001
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar...    40   0.001
At1g54270.1 68414.m06187 eukaryotic translation initiation facto...    40   0.001
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)...    40   0.002
At3g13920.1 68416.m01758 eukaryotic translation initiation facto...    40   0.002
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative              39   0.003
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila...    39   0.004
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila...    39   0.004
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila...    39   0.004
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar...    39   0.004
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY...    37   0.012
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)...    37   0.017
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)...    37   0.017
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative              37   0.017
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he...    35   0.067
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /...    33   0.15 
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)...    32   0.47 
At1g51380.1 68414.m05780 eukaryotic translation initiation facto...    31   0.62 
At3g19760.1 68416.m02501 eukaryotic translation initiation facto...    31   0.82 
At5g43990.2 68418.m05382 SET domain-containing protein identical...    29   2.5  
At5g43990.1 68418.m05383 SET domain-containing protein identical...    29   2.5  
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative              29   3.3  
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)...    29   3.3  
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)...    29   3.3  
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide...    29   3.3  
At3g04670.1 68416.m00500 WRKY family transcription factor simila...    28   5.8  
At2g33420.1 68415.m04096 expressed protein                             28   5.8  
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote...    28   7.7  
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical...    28   7.7  
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical...    28   7.7  
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical...    28   7.7  
At1g47330.1 68414.m05240 expressed protein contains Pfam profile...    28   7.7  
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes...    28   7.7  

>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
           similar to ethylene-responsive RNA helicase GI:5669638
           from [Lycopersicon esculentum]; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 501

 Score =  112 bits (270), Expect = 2e-25
 Identities = 50/76 (65%), Positives = 61/76 (80%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
           +TGSGKTL+Y+LPAIVH+N QP +  GDGPI LVLAPTRELA QIQQ A+ FG +S ++ 
Sbjct: 144 ETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKT 203

Query: 704 TCVFGGAPKREQARDL 751
           TC++GG PK  Q RDL
Sbjct: 204 TCIYGGVPKGPQVRDL 219



 Score =  100 bits (240), Expect = 9e-22
 Identities = 46/91 (50%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
 Frame = +1

Query: 238 SPR-LGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANF 414
           SPR L    L PF KNFY   P V   +  EVEEYR   E+TV G ++  P++ F +  F
Sbjct: 47  SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106

Query: 415 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
           PDYV + VK  G+ EPTPIQ+QGWP+AM G+
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGR 137


>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 591

 Score =  105 bits (253), Expect = 2e-23
 Identities = 48/76 (63%), Positives = 61/76 (80%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
           +TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ +  FG  S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269

Query: 704 TCVFGGAPKREQARDL 751
           TC++GGAPK  Q RDL
Sbjct: 270 TCIYGGAPKGPQIRDL 285



 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 38/89 (42%), Positives = 58/89 (65%)
 Frame = +1

Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPD 420
           P+  F +L  F KNFY   PTV   +  +V  YR   +++V G +V  P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174

Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
            + + +  +G+ EPTPIQAQGWP+A+ G+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203


>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 484

 Score =  105 bits (253), Expect = 2e-23
 Identities = 48/76 (63%), Positives = 61/76 (80%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
           +TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ +  FG  S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269

Query: 704 TCVFGGAPKREQARDL 751
           TC++GGAPK  Q RDL
Sbjct: 270 TCIYGGAPKGPQIRDL 285



 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 38/89 (42%), Positives = 58/89 (65%)
 Frame = +1

Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPD 420
           P+  F +L  F KNFY   PTV   +  +V  YR   +++V G +V  P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174

Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
            + + +  +G+ EPTPIQAQGWP+A+ G+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203


>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 619

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 40/76 (52%), Positives = 51/76 (67%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
           +TGSGKTL Y++P  +H+       R  GP  LVL+PTRELA QIQ+ A  FG +S +  
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261

Query: 704 TCVFGGAPKREQARDL 751
           TC++GGAPK  Q RDL
Sbjct: 262 TCLYGGAPKGPQLRDL 277



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 32/72 (44%), Positives = 41/72 (56%)
 Frame = +1

Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPI 471
           P P+    S    E Y   HE+TVSG +V  P+  FE   FP  + + V + G+  PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184

Query: 472 QAQGWPIAMSGK 507
           QAQ WPIAM G+
Sbjct: 185 QAQSWPIAMQGR 196


>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 619

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 40/76 (52%), Positives = 51/76 (67%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
           +TGSGKTL Y++P  +H+       R  GP  LVL+PTRELA QIQ+ A  FG +S +  
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261

Query: 704 TCVFGGAPKREQARDL 751
           TC++GGAPK  Q RDL
Sbjct: 262 TCLYGGAPKGPQLRDL 277



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 32/72 (44%), Positives = 41/72 (56%)
 Frame = +1

Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPI 471
           P P+    S    E Y   HE+TVSG +V  P+  FE   FP  + + V + G+  PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184

Query: 472 QAQGWPIAMSGK 507
           QAQ WPIAM G+
Sbjct: 185 QAQSWPIAMQGR 196


>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 618

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 40/76 (52%), Positives = 51/76 (67%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
           +TGSGKTL Y++P  +H+       R  GP  LVL+PTRELA QIQ+ A  FG +S +  
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261

Query: 704 TCVFGGAPKREQARDL 751
           TC++GGAPK  Q RDL
Sbjct: 262 TCLYGGAPKGPQLRDL 277



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 32/72 (44%), Positives = 41/72 (56%)
 Frame = +1

Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPI 471
           P P+    S    E Y   HE+TVSG +V  P+  FE   FP  + + V + G+  PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184

Query: 472 QAQGWPIAMSGK 507
           QAQ WPIAM G+
Sbjct: 185 QAQSWPIAMQGR 196


>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
           to RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 760

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 38/76 (50%), Positives = 52/76 (68%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
           +TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI   A  F     +R 
Sbjct: 273 KTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRV 332

Query: 704 TCVFGGAPKREQARDL 751
           + V+GG  K EQ ++L
Sbjct: 333 SAVYGGMSKHEQFKEL 348



 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 28/84 (33%), Positives = 47/84 (55%)
 Frame = +1

Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQG 435
           +  +P NK+FY+   ++   +  E  +YR    + VSG +VH P++ FE+  F   +   
Sbjct: 183 IDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSA 242

Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
           +K   Y++PT IQ Q  PI +SG+
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGR 266


>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
           RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 1166

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 37/76 (48%), Positives = 49/76 (64%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
           +TGSGKTL ++LP + HI +QPP+  GDGPI LV+APTREL QQI      F     +R 
Sbjct: 574 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRC 633

Query: 704 TCVFGGAPKREQARDL 751
             V+GG+   +Q  +L
Sbjct: 634 VPVYGGSGVAQQISEL 649



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 28/84 (33%), Positives = 44/84 (52%)
 Frame = +1

Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQG 435
           +  +PF KNFY     + + +  EV  YR   E+ V G +V  PI+ + +      +   
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543

Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
           +K + Y++P PIQ Q  PI MSG+
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGR 567


>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 1088

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 38/76 (50%), Positives = 52/76 (68%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
           +TGSGKTL Y++PA + + +     R +GP  L+LAPTRELA QIQ  A  FG +S +  
Sbjct: 480 KTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRISC 538

Query: 704 TCVFGGAPKREQARDL 751
           TC++GGAPK  Q ++L
Sbjct: 539 TCLYGGAPKGPQLKEL 554



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
 Frame = +1

Query: 274 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVK 441
           NK+   PH    P V   SP E+  YR  HEVT +G  +  P   FE +  P  + + + 
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451

Query: 442 TMGYKEPTPIQAQGWPIAMSGK 507
           + G+  PTPIQAQ WPIA+  +
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSR 473


>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
           to RNA helicase GB:A57514 GI:897915 from [Rattus
           norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 989

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 36/76 (47%), Positives = 48/76 (63%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
           +TGSGKTL ++LP + HI +QPP+  GDGPI LV+APTREL QQI      F     +  
Sbjct: 441 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIIC 500

Query: 704 TCVFGGAPKREQARDL 751
             V+GG+   +Q  +L
Sbjct: 501 VPVYGGSGVAQQISEL 516



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 29/84 (34%), Positives = 44/84 (52%)
 Frame = +1

Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQG 435
           +  +PF KNFY     + + +   V  YR   E+ V G +V  PIQ + +      +   
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410

Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
           +K + Y++P PIQAQ  PI MSG+
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGR 434


>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 713

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 36/76 (47%), Positives = 49/76 (64%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
           +TGSGKTL Y++P  +H+       R  GP  LVL+PTRELA QIQ  A  FG +S +  
Sbjct: 274 KTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFGKSSKISC 332

Query: 704 TCVFGGAPKREQARDL 751
            C++GGAPK  Q +++
Sbjct: 333 ACLYGGAPKGPQLKEI 348



 Score = 34.7 bits (76), Expect = 0.067
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
           V + G+  P+PIQAQ WPIAM  +
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNR 267



 Score = 31.5 bits (68), Expect = 0.62
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 331 EEYRNNHEVTVSGVEVHNPIQXFEEANFPD 420
           E Y   HE+TVSG +V  P+  FE    P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170


>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
           SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 733

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 694
           +TGSGKT A++LP + +I+  PP+      +GP A+V+APTRELAQQI++    F H   
Sbjct: 358 ETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLG 417

Query: 695 VRNTCVFGGAPKREQ 739
            R T + GG    EQ
Sbjct: 418 FRVTSIVGGQSIEEQ 432



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +1

Query: 337 YRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
           +R +  ++  G  +  P++ +EE+     + + V+  GYK+P+PIQ    P+ +
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGL 348


>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
           to p68 RNA helicase [Schizosaccharomyces pombe]
           GI:173419
          Length = 537

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTS 691
           +TGSGKTLA+ +PAI+H+      I  G     P  LVL+PTRELA QI  V  + G   
Sbjct: 159 KTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPC 218

Query: 692 YVRNTCVFGGAPKREQ 739
            +++ CV+GG+ K  Q
Sbjct: 219 GLKSICVYGGSSKGPQ 234



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 325 EVEEYRNNHEVTVSGVEV--HNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
           E E  +    VT  GVE   +  ++ F E+N P+ V    KT  +++P+PIQ+  WP  +
Sbjct: 92  EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149

Query: 499 SGK 507
            G+
Sbjct: 150 DGR 152


>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 633

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 688
           QTGSGKT A+  P I  I     ++R  G     P+A++L+PTRELA QI   A  F + 
Sbjct: 204 QTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQ 263

Query: 689 SYVRNTCVFGGAPKREQARDL 751
           + V+    +GG P  +Q R+L
Sbjct: 264 TGVKVVVAYGGTPINQQLREL 284



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +1

Query: 262 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGV 438
           + PF  +  +P P   ++    +  +   +  +  SG  V  P+  F E +  + +   +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174

Query: 439 KTMGYKEPTPIQAQGWPIAMSGK 507
           +   Y +PTP+Q    PI + G+
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGR 197


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 688
           QTGSGKT A+  P I  I     I R  G     P+A++L+PTRELA QI   A  F + 
Sbjct: 191 QTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQ 250

Query: 689 SYVRNTCVFGGAPKREQARDL 751
           + V+    +GG P  +Q R+L
Sbjct: 251 TGVKVVVAYGGTPVNQQIREL 271



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +1

Query: 268 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVKT 444
           PF N    DP     + +    E Y +   +  SG  V  P+  F E +  + +   ++ 
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163

Query: 445 MGYKEPTPIQAQGWPIAMSGK 507
             Y +PTP+Q    PI  +G+
Sbjct: 164 CKYVKPTPVQRNAIPILAAGR 184


>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 688
           QTGSGKT A+  P I  I     + R  G     P A++L+PTRELA QI   A  F + 
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ 255

Query: 689 SYVRNTCVFGGAPKREQARDL 751
           + V+    +GG P  +Q R+L
Sbjct: 256 TGVKVVVAYGGTPIHQQLREL 276



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 355 VTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
           V  SG +V  P+  F + +  D +   ++   Y  PTP+Q    PI ++
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLA 187


>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 688
           QTGSGKT A+  P I  I     + R  G     P A++L+PTRELA QI   A  F + 
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ 255

Query: 689 SYVRNTCVFGGAPKREQARDL 751
           + V+    +GG P  +Q R+L
Sbjct: 256 TGVKVVVAYGGTPIHQQLREL 276



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 355 VTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
           V  SG +V  P+  F + +  D +   ++   Y  PTP+Q    PI ++
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLA 187


>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
           RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 616

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 694
           R +TG+GKTLA+ +P I  I        RG  P+ LVLAPTRELA+Q+++   +F  ++ 
Sbjct: 147 RARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK---EFRESAP 203

Query: 695 VRNT-CVFGGAPKREQARDL 751
             +T C++GG P  +Q R L
Sbjct: 204 SLDTICLYGGTPIGQQMRQL 223


>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
           similar to RNA helicases GI:3775995, GI:3775987
           [Arabidopsis thaliana]; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 610

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 694
           R +TG+GKTLA+ +P I  I        RG  P  LVLAPTRELA+Q+++   +F  ++ 
Sbjct: 159 RARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK---EFRESAP 215

Query: 695 VRNT-CVFGGAPKREQARDL 751
             +T C++GG P  +Q R+L
Sbjct: 216 SLDTICLYGGTPIGQQMREL 235


>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
           helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
          Length = 542

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
 Frame = +2

Query: 527 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ----IQQVAADFGH 685
           TGSGKTL ++LP I+    +    PI  G+GPIALV+ P+RELA+Q    ++Q  A    
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVE 202

Query: 686 TSY--VRNTCVFGGAPKREQ 739
             Y  +R+    GG   R Q
Sbjct: 203 DGYPRLRSLLCIGGVDMRSQ 222



 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 27/86 (31%), Positives = 46/86 (53%)
 Frame = +1

Query: 250 GFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQ 429
           G    +P +  ++ P   V K S  +++  R    +TV+G ++  PI+ F +  FP  + 
Sbjct: 51  GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109

Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGK 507
           + +K  G   PTPIQ QG P+ +SG+
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGR 135


>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
           helicase -Mus musculus,PIR2:I84741
          Length = 621

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
 Frame = +2

Query: 521 TQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 685
           + TGSGKTLAY+LP IV +  +     G       P  +VL PTREL++Q+ +VA    H
Sbjct: 156 SHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH 214

Query: 686 TSYVRNTCVFGGAPKREQARDL 751
            +  R+  V GG+  R Q   L
Sbjct: 215 HARFRSILVSGGSRIRPQEDSL 236


>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
           identical to GB:CAA09207, contains a DEAD/DEAH box
           family ATP-dependent helicas signature; identical to
           cDNA DEAD box RNA helicase, RH17 GI:3776008
          Length = 609

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
 Frame = +2

Query: 527 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SYVR 700
           TG+GKT+AY+ P I H+  + P + R  G  ALV+ PTREL  Q+ +      H   ++ 
Sbjct: 76  TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIV 135

Query: 701 NTCVFGGAPK-REQAR 745
              V GG  K +E+AR
Sbjct: 136 PGYVMGGEKKAKEKAR 151



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 445 MGYKEPTPIQAQGWPIAMSGK 507
           MG++ PT +QAQ  P+ +SG+
Sbjct: 48  MGFEAPTLVQAQAIPVILSGR 68


>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 671

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADFG 682
           R +TG GKTLA++LP +  + N P   +     G  P  LVL PTRELA+Q+      +G
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYG 198

Query: 683 HTSYVRNTCVFGG 721
            +  + + C++GG
Sbjct: 199 GSLGLSSCCLYGG 211


>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 
          Length = 591

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
 Frame = +2

Query: 527 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 679
           TGSGKTL ++LP I+    +    PI  G+GPI L++ P+RELA+Q  +V   F
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQF 245



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 23/74 (31%), Positives = 40/74 (54%)
 Frame = +1

Query: 286 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPT 465
           + P   + K S  + +  R    + V+G ++  PI+ F++  FP  V   +K  G  +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170

Query: 466 PIQAQGWPIAMSGK 507
           PIQ QG P+ ++G+
Sbjct: 171 PIQVQGLPVILAGR 184


>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain, PF00098: Zinc knuckle
          Length = 747

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQVAADFG 682
           R +TG+GKTLA+ +P I  +  +       RR G  P  LVLAPTRELA+Q+++   +  
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE-- 202

Query: 683 HTSYVRNTCVFGG 721
              Y+   CV+GG
Sbjct: 203 SAPYLSTVCVYGG 215


>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
           contains Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 505

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
 Frame = +2

Query: 527 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
           TGSGKT ++++P I      +++ P  +   P+A+VLAPTREL  Q++  A   G     
Sbjct: 156 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPF 215

Query: 698 RNTCVFGGAPKREQ 739
           +   V GG P   Q
Sbjct: 216 KTALVVGGDPMSGQ 229



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +1

Query: 316 SPYEVEEYRNNHEVTVSGV--EVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 489
           S ++ +  R   ++ V G    V  P+  F     P  +   ++T GY  PTPIQ Q  P
Sbjct: 83  SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142

Query: 490 IAMSGKI*LA 519
            A++GK  LA
Sbjct: 143 AALTGKSLLA 152


>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
           contains Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 368

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
 Frame = +2

Query: 527 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
           TGSGKT ++++P I      +++ P  +   P+A+VLAPTREL  Q++  A   G     
Sbjct: 19  TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPF 78

Query: 698 RNTCVFGGAPKREQ 739
           +   V GG P   Q
Sbjct: 79  KTALVVGGDPMSGQ 92


>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
           to RNA helicase GI:3776027 from [Arabidopsis thaliana]
          Length = 513

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 26/76 (34%), Positives = 45/76 (59%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
           +TGSGKT A+++P +  +    P  +G G  AL+L+PTR+LA+Q  +   + G  + +R 
Sbjct: 73  RTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLRV 129

Query: 704 TCVFGGAPKREQARDL 751
           + + GG    +Q  +L
Sbjct: 130 SLLVGGDSMEDQFEEL 145



 Score = 35.9 bits (79), Expect = 0.029
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
           FE  N    V   +K  GYK PTPIQ +  P+ +SG
Sbjct: 30  FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG 65


>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
           identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
          Length = 789

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 26/71 (36%), Positives = 38/71 (53%)
 Frame = +2

Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 706
           TGSGKT A+ LP +  +  +P  +R      L+L PTRELA QI  +  +    + ++  
Sbjct: 213 TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCG 270

Query: 707 CVFGGAPKREQ 739
            + GG   REQ
Sbjct: 271 LIVGGLSVREQ 281



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 21/50 (42%), Positives = 30/50 (60%)
 Frame = +1

Query: 358 TVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
           TV GV  H     F E N    + +  +T+GYK+PTPIQA   P+A++G+
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205


>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
           non-consensus acceptor splice site AT at exon 2; similar
           to DEAD box helicase protein GB:NP_006764 from [Homo
           sapiens], contains Pfam profile: PF00270  DEAD/DEAH box
           helicase
          Length = 568

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 700
           +TGSGKTLA+++PA+ +    +   R G G   +V+ PTRELA Q + VA +        
Sbjct: 134 RTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEELLKHHSQT 191

Query: 701 NTCVFGGAPKREQAR 745
            + V GG  +R +A+
Sbjct: 192 VSMVIGGNNRRSEAQ 206


>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
           similarity to RNA helicase RH26 [Arabidopsis thaliana]
           GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH26
           GI:3776024
          Length = 850

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 655
           + +TG+GKT+A++LPAI  +   PP  R       I LV+ PTRELA Q
Sbjct: 425 KAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473


>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicase GB:6321111 from (S.
           cerevisiae)
          Length = 558

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
 Frame = +2

Query: 527 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 694
           TGSGKTLA++LP I  I   N+ PP  +    + ++++PTREL+ QI +VA  F  T   
Sbjct: 62  TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPN 119

Query: 695 VRNTCVFGG 721
           V +  + GG
Sbjct: 120 VNSVLLVGG 128


>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
           identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
          Length = 626

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 658
           R +TGSGKTLAY+LP +  + +   + ++   P A +L P+REL QQ+
Sbjct: 89  RAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +1

Query: 325 EVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
           EVEE RN+ E      E   P + FEE      + + +   G ++PT IQ    P  + G
Sbjct: 25  EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83

Query: 505 K 507
           K
Sbjct: 84  K 84


>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
           to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
           melanogaster and is a member of PF|00270 DEAD/DEAH box
           helicase family
          Length = 491

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 30/76 (39%), Positives = 39/76 (51%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
           QTGSGKT A+ LP I+H   + P     G  ALV+ PTRELA Q+ +     G    +R 
Sbjct: 103 QTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLRC 157

Query: 704 TCVFGGAPKREQARDL 751
           + + GG     Q   L
Sbjct: 158 SVIVGGMDMLTQTMSL 173


>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
           to RNA helicase involved in rRNA processing GB:6321267
           from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
           box domain
          Length = 541

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
 Frame = +1

Query: 340 RNNHEVTVSGVEVHNPIQXFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
           R  + + VSG  +  P++ F E +       Y+ + +  +G+KEPTPIQ Q  PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179



 Score = 36.7 bits (81), Expect = 0.017
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +2

Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 655
           TGSGKT A+I P ++ +         DG  A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225


>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
           similarity to RNA helicase RH25 [Arabidopsis thaliana]
           GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH31
           GI:3776030
          Length = 522

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 655
           + +TG+GKT+A++LP+I  +   PP    +   PI ALV+ PTRELA Q
Sbjct: 97  KAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145


>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
           RNA helicase [Arabidopsis thaliana] GI:3776023; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 563

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 655
           + +TG+GKT+A++LP+I  +   PP  R +     I LV+ PTRELA Q
Sbjct: 123 KAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171


>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
           Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 465

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
 Frame = +2

Query: 527 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 670
           TGSGKTLA++LP I  I   N+ PP  +    + ++++PTREL+ QI +VA
Sbjct: 63  TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111


>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
           Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 781

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQIQQVAADFGHTS 691
           Q+GSGKTLAY++P I  +     Q   +   G P  +VL PT ELA Q+         + 
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSG 478

Query: 692 Y-VRNTCVFGGAPKREQARDL 751
              R+  V GG  +R Q  +L
Sbjct: 479 VPFRSMVVTGGFRQRTQLENL 499


>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
           Pfam profiles  PF00270:DEAD/DEAH box helicase and
           PF00271:  Helicase conserved C-terminal domain;
           identical to cDNA RH27 helicase, partial GI:4033334
          Length = 633

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF--GHTSYV 697
           +TGSGKTLA+++PA V +  +      +G   LV+ PTRELA Q   VA +    H+  V
Sbjct: 199 RTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTV 257

Query: 698 RNTCVFGGAPKREQARDL 751
               V GG  ++ +A  L
Sbjct: 258 GK--VIGGEKRKTEAEIL 273



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/81 (24%), Positives = 34/81 (41%)
 Frame = +1

Query: 265 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVKT 444
           +P  K       T  K    EVE+     ++  + +  +   + FE  +  D   + +K 
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTN---KTFESLSLSDNTYKSIKE 171

Query: 445 MGYKEPTPIQAQGWPIAMSGK 507
           MG+   T IQA+  P  M G+
Sbjct: 172 MGFARMTQIQAKAIPPLMMGE 192


>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 
          Length = 593

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
 Frame = +2

Query: 527 TGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 694
           TGSGKTLA+++P +  +      PP  +    + ++++PTREL+ QI  VA  F  T + 
Sbjct: 62  TGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVAQPFVSTLAN 119

Query: 695 VRNTCVFGG 721
           V +  + GG
Sbjct: 120 VNSVLLVGG 128


>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative similar to Eukaryotic
           initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
           identical to (putative) RNA helicase GB:CAA09211
           [Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
           628-636 (1999))
          Length = 414

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 23/45 (51%), Positives = 26/45 (57%)
 Frame = +2

Query: 617 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 751
           ALVLAPTRELAQQI++V    G    V+     GG   RE  R L
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVL 156


>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
           RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 798

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 658
           + +TG+GK++A++LPAI  +    N+   + +     AL+L PTRELA QI
Sbjct: 371 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421


>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
           4A-2 / eIF-4A-2 similar to eukaryotic translation
           initiation factor 4A GI:19696 from [Nicotiana
           plumbaginifolia]
          Length = 412

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 23/45 (51%), Positives = 26/45 (57%)
 Frame = +2

Query: 617 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 751
           ALVLAPTRELAQQI++V    G    V+     GG   RE  R L
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRIL 154


>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
           probable replication protein A1, Oryza sativa,
           EMBL:AF009179
          Length = 456

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQVAADFG 682
           QTGSGKT A+ +P +  +     +++P   R   P   A VL+PTRELA QI +     G
Sbjct: 54  QTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALG 113

Query: 683 HTSYVRNTCVFGGAPKREQ 739
               +R   + GG  + +Q
Sbjct: 114 ADISLRCAVLVGGIDRMQQ 132



 Score = 31.9 bits (69), Expect = 0.47
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 373 EVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
           E +  ++ F E    + + +  + +G+K P+ IQA+  P A+ GK
Sbjct: 3   EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGK 47


>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
           4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
           contains Pfam profile PF00270: DEAD/DEAH box helicase;
           contains Pfam profile PF00271: Helicase conserved
           C-terminal domain
          Length = 412

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 23/45 (51%), Positives = 26/45 (57%)
 Frame = +2

Query: 617 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 751
           ALVLAPTRELAQQI++V    G    V+     GG   RE  R L
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 154


>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 
          Length = 739

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/54 (37%), Positives = 32/54 (59%)
 Frame = +2

Query: 494 LCLERFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 655
           LC        +TGSGKTLA+++P +  ++ +      DG   ++++PTRELA Q
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158


>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
           to D-E-A-D box protein [Drosophila melanogaster]
           GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 512

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 24/47 (51%), Positives = 31/47 (65%)
 Frame = +2

Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 667
           TGSGKTL+Y LP IV +    P+R      ALV+ PTR+LA Q++ V
Sbjct: 71  TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113


>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/73 (28%), Positives = 37/73 (50%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
           R + G+GKT A+ +P +  I+    + +     A+++ PTRELA Q  QV  + G    +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKI 228

Query: 698 RNTCVFGGAPKRE 736
           +     GG   ++
Sbjct: 229 QVMVTTGGTSLKD 241



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
           FE+      +  G+   G++ P+PIQ +  PIA++G+  LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173


>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/73 (28%), Positives = 37/73 (50%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
           R + G+GKT A+ +P +  I+    + +     A+++ PTRELA Q  QV  + G    +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKI 228

Query: 698 RNTCVFGGAPKRE 736
           +     GG   ++
Sbjct: 229 QVMVTTGGTSLKD 241



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
           FE+      +  G+   G++ P+PIQ +  PIA++G+  LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173


>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
           RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 845

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 658
           + +TG+GK++A++LPAI  +    N+   + +      L+L PTRELA QI
Sbjct: 418 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468


>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
           EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
           sapiens, SWISSPROT:IF42_HUMAN
          Length = 472

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 22/49 (44%), Positives = 28/49 (57%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 670
           QTGSGKTL Y+L     IN Q          A+++ PTREL  Q+ +VA
Sbjct: 121 QTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164


>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
           identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
          Length = 498

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 22/73 (30%), Positives = 36/73 (49%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
           R + G+GKT A+ +P +  I+    + +     A++L PTRELA Q  QV  +      +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNI 221

Query: 698 RNTCVFGGAPKRE 736
           +     GG   R+
Sbjct: 222 QVMVTTGGTSLRD 234



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
           FE+      + +G+   G+++P+PIQ +  PIA++G   LA
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166


>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
           identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
          Length = 498

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 22/73 (30%), Positives = 36/73 (49%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
           R + G+GKT A+ +P +  I+    + +     A++L PTRELA Q  QV  +      +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNI 221

Query: 698 RNTCVFGGAPKRE 736
           +     GG   R+
Sbjct: 222 QVMVTTGGTSLRD 234



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
           FE+      + +G+   G+++P+PIQ +  PIA++G   LA
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166


>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
          Length = 528

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 22/73 (30%), Positives = 36/73 (49%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
           R + G+GKT A+ +P +  I+ +  + +     A++L PTRELA Q  QV  +      +
Sbjct: 197 RAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYLKI 251

Query: 698 RNTCVFGGAPKRE 736
                 GG   R+
Sbjct: 252 EVMVTTGGTSLRD 264



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
           FE+      + +G+   G+++P+PIQ +  PIA++G   LA
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILA 196


>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
           helicase, Mus musculus, PIR:I49731
          Length = 496

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 682
           +   GSGKT  ++L  +  ++  P +R    P AL + PTRELA Q  +V    G
Sbjct: 137 QAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186


>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles:  PF00271 helicase conserved
           C-terminal domain, PF01535 PPR repeat, PF00270:
           DEAD/DEAH box helicase
          Length = 1145

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI-QQVA 670
           ++ TGSGKTLAY+LP +  I       R             A+++AP+REL  QI ++V 
Sbjct: 153 QSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVE 212

Query: 671 ADFGHTSYVRNTCVFGGAPKREQARDL 751
              G         + GGA +  Q   L
Sbjct: 213 KLLGPVHRRMVQQLVGGANRMRQEEAL 239



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
           FEE   PD +   ++  G+  PT +Q+   P  + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147


>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
           similar to RNA helicase GB:CAA09204 from [Arabidopsis
           thaliana]; identical to cDNA DEAD box RNA helicase, RH13
           GI:3776002
          Length = 832

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
 Frame = +2

Query: 524 QTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALVLAPTRELAQQI 658
           +TGSGKTLA+ LP +  +                +      DG + AL++ PTRELA Q+
Sbjct: 236 ETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQV 295

Query: 659 QQVAADFGHTSYVRNTCVFGGAPKREQARDL 751
            +   +      V+   + GG    +Q R L
Sbjct: 296 TEHLENAAKNLSVKVVPIVGGMFSEKQERRL 326


>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative
          Length = 392

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 385 PIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
           PI+ F++    D V +GV   GYK+P+ IQ +     + G+
Sbjct: 20  PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGR 60



 Score = 31.1 bits (67), Expect = 0.82
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
 Frame = +2

Query: 518 RTQTGSGKT--LAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HT 688
           + Q+G+GKT  +A  +  IV+I+++           LVL+P+RELA Q ++     G HT
Sbjct: 65  QAQSGTGKTSMIAISVCQIVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHT 117

Query: 689 SYVRNTCVFG 718
           +   + C+ G
Sbjct: 118 NIQAHACIGG 127


>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative / DEAD box RNA helicase,
           putative contains DEAD/DEAH helicase domain; similar to
           RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
           identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
          Length = 408

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 617 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDL 751
           AL+L+PTRELA Q ++     G H +   + C+ GG    E  R L
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACI-GGNSVGEDIRKL 150


>At5g43990.2 68418.m05382 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 740

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +1

Query: 235 ASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANF 414
           ASP LG  +L+  + N  +  P +L   P  +E   +  E+ ++ VE   PI     ++ 
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202

Query: 415 PDYVQQGVKTM 447
           PD V +G  +M
Sbjct: 203 PDSVDRGDSSM 213


>At5g43990.1 68418.m05383 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 717

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +1

Query: 235 ASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANF 414
           ASP LG  +L+  + N  +  P +L   P  +E   +  E+ ++ VE   PI     ++ 
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179

Query: 415 PDYVQQGVKTM 447
           PD V +G  +M
Sbjct: 180 PDSVDRGDSSM 190


>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
          Length = 427

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 658
           + ++G GKT  ++L  +  I   P      G + ALVL  TRELA QI
Sbjct: 89  QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130


>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
           DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
           EMBL:ATH010466
          Length = 344

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 658
           + ++G GKT  ++L  +  I   P      G + ALVL  TRELA QI
Sbjct: 6   QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47


>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
           DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
           EMBL:ATH010466
          Length = 427

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 658
           + ++G GKT  ++L  +  I   P      G + ALVL  TRELA QI
Sbjct: 89  QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130


>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
           identical to RNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|8248473|gb|AAF74208
          Length = 1196

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 180 LEDLEDLVGKKNSLEVRTCVAQIGICFTPTF 272
           + D++  +GK     V  C A++G+CF+ T+
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTY 560


>At3g04670.1 68416.m00500 WRKY family transcription factor similar
           to elicitor response element binding protein WRKY3
           isolog GB:AAB63078 [Arabidopsis thaliana]
          Length = 330

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 657 ICCANSLVGAKTKAIGPSPLRI 592
           ICC N L G  T+ + P PL++
Sbjct: 79  ICCGNDLSGDYTQVLAPEPLQM 100


>At2g33420.1 68415.m04096 expressed protein
          Length = 1039

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 19  SKRIHSLNKHLQLNPKI 69
           S  IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805


>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
            kinase, putative protein kinase Xa21 - Oryza sativa,
            PIR:A57676
          Length = 1011

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 423  CATRCKDNGLQRTDAYSSSRLADSYVWKDLVGVLKR 530
            C T   + GL+  + Y ++RLA S V K+L+ + +R
Sbjct: 966  CLTLVLEVGLRCCEEYPTNRLATSEVAKELISIRER 1001


>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
           histidine kinase AHK4 [Arabidopsis thaliana]
           gi|13537200|dbj|BAB40776; contains Pfam profiles
           PF03924: CHASE domain,  PF02518:  ATPase, histidine
           kinase-, DNA gyrase B-, and HSP90-like domain protein,
           PF00512:  His Kinase A (phosphoacceptor) domain,
           PF00072:  Response regulator receiver domain
          Length = 1057

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +1

Query: 286 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEP 462
           Y  +P+ + +  +     R   E   +SGV     +  FE   F       +KTM   EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231

Query: 463 TPIQAQGWPIAMS 501
           +P++ +  P+  S
Sbjct: 232 SPVRDEYAPVIFS 244


>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
           histidine kinase AHK4 [Arabidopsis thaliana]
           gi|13537200|dbj|BAB40776; contains Pfam profiles
           PF03924: CHASE domain,  PF02518:  ATPase, histidine
           kinase-, DNA gyrase B-, and HSP90-like domain protein,
           PF00512:  His Kinase A (phosphoacceptor) domain,
           PF00072:  Response regulator receiver domain
          Length = 1080

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +1

Query: 286 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEP 462
           Y  +P+ + +  +     R   E   +SGV     +  FE   F       +KTM   EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254

Query: 463 TPIQAQGWPIAMS 501
           +P++ +  P+  S
Sbjct: 255 SPVRDEYAPVIFS 267


>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
           histidine kinase AHK4 [Arabidopsis thaliana]
           gi|13537200|dbj|BAB40776; contains Pfam profiles
           PF03924: CHASE domain,  PF02518:  ATPase, histidine
           kinase-, DNA gyrase B-, and HSP90-like domain protein,
           PF00512:  His Kinase A (phosphoacceptor) domain,
           PF00072:  Response regulator receiver domain
          Length = 1057

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +1

Query: 286 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEP 462
           Y  +P+ + +  +     R   E   +SGV     +  FE   F       +KTM   EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231

Query: 463 TPIQAQGWPIAMS 501
           +P++ +  P+  S
Sbjct: 232 SPVRDEYAPVIFS 244


>At1g47330.1 68414.m05240 expressed protein contains Pfam profile
           PF01595: Domain of unknown function
          Length = 527

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 401 KKQIFLIMCNKV*RQWVTKNRRLFKLKAGR*LCLERFSWRTQTGSGKTLAYILPA 565
           K ++F   C K   Q+    + +FK++ G     +  +   Q GSGKT     PA
Sbjct: 332 KDELFKDSCRKPKAQFEVSEKEVFKIETGDAKSGKSENGEEQQGSGKTSLLAAPA 386


>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
           from this gene
          Length = 1035

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 19  SKRIHSLNKHLQLNPKI 69
           S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,587,312
Number of Sequences: 28952
Number of extensions: 322182
Number of successful extensions: 1071
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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