Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021005
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28850.1 68418.m03549 calcium-binding EF hand family protein ...    29   2.4  
At1g67500.1 68414.m07688 DNA polymerase family B protein similar...    28   7.4  
At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1 ...    27   9.8  
At1g23540.1 68414.m02960 protein kinase family protein contains ...    27   9.8  

>At5g28850.1 68418.m03549 calcium-binding EF hand family protein
           contains Pfam profile: PF00036 EF hand
          Length = 324

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
 Frame = +1

Query: 466 IFTRRYSFLYFKYSQVD----MKKLLGGQIGLEDFIFAHRKGRPKEIEIVKTEDALGLTI 633
           +++R YSFL+F   Q D    +K+LL    GLE F+ +  + + +  E V     +   I
Sbjct: 5   LYSRFYSFLFFFSWQDDFKPLLKELLATHPGLE-FLQSTPEFQERYAETVTYR--IFYYI 61

Query: 634 TDNGAGYAFIKRIKEGSIVXRIPHIEVGDHIEK 732
             +G G    + +K G+++  + H +  + I K
Sbjct: 62  NRSGNGRITFRELKRGNLIDAMLHADEEEDINK 94


>At1g67500.1 68414.m07688 DNA polymerase family B protein similar to
            SP|Q61493 DNA polymerase zeta catalytic subunit (EC
            2.7.7.7) {Mus musculus}; contains Pfam profile PF00136:
            DNA polymerase family B
          Length = 1890

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 460  LRIFTRRYSFLYFK-YSQVDMKKLLGGQIGLEDFIFA 567
            LR+F  + +    K Y     K++L G++ L+DFIFA
Sbjct: 1616 LRLFFEQKNISKVKSYLYRQWKRILSGRVSLQDFIFA 1652


>At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1
           subunit-related contains similarity to Swiss-Prot:P80387
           5'-AMP-activated protein kinase, beta-1 subunit (AMPK
           beta-1 chain) (AMPKb) (40 kDa subunit) [Sus scrofa]
          Length = 591

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 598 IVKTEDALGLTITDNGAGYAFIKRIKEGSIVXRIPHIEVGDHIEK 732
           +V  E  LG+    +  G  F+  IK+GS   +   I VGD ++K
Sbjct: 78  MVTLEKPLGIRFALSADGKIFVHAIKKGSNAEKARIIMVGDTLKK 122


>At1g23540.1 68414.m02960 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 320 QST*VDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYE-FSPEDIL 487
           Q + + NS GT       H  Q+ G+P   I G       YE++AE  + F+ ++IL
Sbjct: 321 QQSSMGNSYGTAGGGYPHHQMQSSGTPDSAILGSGQTHFSYEELAEITQGFARKNIL 377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,614,790
Number of Sequences: 28952
Number of extensions: 293188
Number of successful extensions: 699
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)