Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021003
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10280.1 68416.m01232 fatty acid elongase 3-ketoacyl-CoA synt...    30   1.4  
At2g46720.1 68415.m05829 fatty acid elongase 3-ketoacyl-CoA synt...    30   1.4  
At5g48360.1 68418.m05975 formin homology 2 domain-containing pro...    28   5.7  
At5g13830.1 68418.m01617 FtsJ-like methyltransferase family prot...    28   5.7  
At1g27090.1 68414.m03302 glycine-rich protein                          28   5.7  
At4g32630.1 68417.m04645 hypothetical protein                          27   7.5  
At2g26640.1 68415.m03196 beta-ketoacyl-CoA synthase, putative si...    27   10.0 

>At3g10280.1 68416.m01232 fatty acid elongase 3-ketoacyl-CoA
           synthase, putative similar to fatty acid elongase
           3-ketoacyl-CoA synthase 1 GB:AAC99312 [Arabidopsis
           thaliana]
          Length = 459

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 134 YHDAYVGAMVTVGTMALTLIMI-YGAARGKPAYLLPFFCLQ 253
           +HD +    V +G + +++    Y   R KP YL+ F C Q
Sbjct: 29  HHDFFSPFPVKIGLLLISIFFYAYSTTRSKPVYLVDFSCHQ 69


>At2g46720.1 68415.m05829 fatty acid elongase 3-ketoacyl-CoA
           synthase, putative similar to GI:4091810; contains Pfam
           profile PF02797: Chalcone and stilbene synthases,
           C-terminal domain
          Length = 466

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 134 YHDAYVGAMVTVGTMALTLIMI-YGAARGKPAYLLPFFCLQ 253
           +HD +    V +G + +++    Y   R KP YL+ F C Q
Sbjct: 29  HHDFFSPFPVKIGLLLISIFFYAYSTTRSKPVYLVDFSCHQ 69


>At5g48360.1 68418.m05975 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 782

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = +2

Query: 47  VLPTPLSNVETRPSPYSQHASHPSDHSLIYHDAYVGAMVTVGTMALTLIMIYGAARGKPA 226
           V PT  +N+     P S    H S   L+     + A++ + T+    + +YG  RG+  
Sbjct: 76  VFPTFPANISALVLPRSSKPHHTSPTLLL---PALSAVLVIATVIGLALFLYGRHRGQTR 132

Query: 227 YLLPFFCLQTST 262
           +L    C  ++T
Sbjct: 133 HLKNSHCSSSNT 144


>At5g13830.1 68418.m01617 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 224

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 457 ALLQVPDDEDGGPAKPHPFVISSDG 531
           A+ Q P+D+DGGP +  P V+   G
Sbjct: 151 AISQSPNDDDGGPNESRPGVLRHGG 175


>At1g27090.1 68414.m03302 glycine-rich protein
          Length = 420

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 43  RCTAHTTVKCGNSSQPILSTCFTS 114
           RC  H  +   NS QPI S C TS
Sbjct: 200 RCVEHAKLWLANSEQPIESNCNTS 223


>At4g32630.1 68417.m04645 hypothetical protein 
          Length = 531

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 2   SSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSL 130
           +SP ++ ++ G +G V+P    N+ T+ +    +   PSD S+
Sbjct: 361 TSPTTAHAHSGSSGPVVPVAPDNLNTKETATLANNQGPSDFSM 403


>At2g26640.1 68415.m03196 beta-ketoacyl-CoA synthase, putative
           similar to beta-ketoacyl-CoA synthase [Simmondsia
           chinensis][GI:1045614]
          Length = 509

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 125 SLIYHDAYVGAMVTVGTMALTLIM-IYGAARGKPAYLLPFFCLQ 253
           SL  H  Y    V V +M L  +M IY   R +P YL+ F C +
Sbjct: 66  SLWEHLQYNLISVVVCSMLLVFLMTIYFMTRPRPVYLVNFSCFK 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,314,232
Number of Sequences: 28952
Number of extensions: 209143
Number of successful extensions: 648
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)