Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0030
(588 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02600.2 68418.m00195 heavy-metal-associated domain-containin... 31 0.43
At5g02600.1 68418.m00196 heavy-metal-associated domain-containin... 31 0.43
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 30 1.00
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 29 2.3
At4g16144.1 68417.m02448 expressed protein 29 3.0
At3g54220.1 68416.m05993 scarecrow transcription factor, putativ... 29 3.0
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family... 28 4.0
At5g16140.1 68418.m01885 peptidyl-tRNA hydrolase family protein ... 28 4.0
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 28 4.0
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 28 4.0
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 28 4.0
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 28 4.0
At5g58010.1 68418.m07258 basic helix-loop-helix (bHLH) family pr... 28 5.3
At4g29230.1 68417.m04181 no apical meristem (NAM) family protein... 28 5.3
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99... 28 5.3
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t... 28 5.3
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 28 5.3
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 27 7.0
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 27 7.0
At1g54170.1 68414.m06175 ataxin-2-related similar to SCA2 (GI:17... 27 7.0
At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger) fa... 27 9.3
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa... 27 9.3
At2g35050.1 68415.m04300 protein kinase family protein contains ... 27 9.3
At1g61080.1 68414.m06877 proline-rich family protein 27 9.3
At1g23230.1 68414.m02906 expressed protein 27 9.3
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family... 27 9.3
>At5g02600.2 68418.m00195 heavy-metal-associated domain-containing
protein low similarity to gi:3168840 copper homeostasis
factor; contains Pfam heavy-metal-associated domain
PF00403; predicted proteins, Arabidopsis thaliana
Length = 319
Score = 31.5 bits (68), Expect = 0.43
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +3
Query: 213 EPALQVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPP 392
EP L + F P++ T LS + +++ P P PPP P Q ++ P
Sbjct: 187 EPVLSPDNPFSEPTKASPTASLSSLEDKDVSSPDFKFSPPPPPPPSPPQ------SSPPS 240
Query: 393 QPENN 407
PE N
Sbjct: 241 PPEKN 245
>At5g02600.1 68418.m00196 heavy-metal-associated domain-containing
protein low similarity to gi:3168840 copper homeostasis
factor; contains Pfam heavy-metal-associated domain
PF00403; predicted proteins, Arabidopsis thaliana
Length = 319
Score = 31.5 bits (68), Expect = 0.43
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +3
Query: 213 EPALQVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPP 392
EP L + F P++ T LS + +++ P P PPP P Q ++ P
Sbjct: 187 EPVLSPDNPFSEPTKASPTASLSSLEDKDVSSPDFKFSPPPPPPPSPPQ------SSPPS 240
Query: 393 QPENN 407
PE N
Sbjct: 241 PPEKN 245
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 30.3 bits (65), Expect = 1.00
Identities = 25/70 (35%), Positives = 34/70 (48%)
Frame = +1
Query: 235 VNSSTQARTVVLSSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKTTGH 414
V + A+ V S P S R SS ++H P+ L SS A SP HPHSL H
Sbjct: 20 VKPKSTAKPVSESETPES--RYWSSFKNHSTPN----LVSSVAALAFSPVHPHSL-AVAH 72
Query: 415 NYSVNLLKKR 444
+ +V+L +
Sbjct: 73 SATVSLFSSQ 82
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 306 QPQGSHLPTPPPIPEVIQRALAYLATAPPQPE 401
+P P+PPP P VIQ L PPQ E
Sbjct: 340 EPSRVQSPSPPPPPPVIQPELPQPQPPPPQLE 371
>At4g16144.1 68417.m02448 expressed protein
Length = 390
Score = 28.7 bits (61), Expect = 3.0
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +3
Query: 171 SAAERGALKNIGAEEPALQVE-GQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIP 347
SA+ G + + L ++ G++Q SE + Q A E+ FQ G P+PPP+
Sbjct: 236 SASLNGDSQEVSTLNSVLSLDDGRWQRHSEAVNS-QFISDATEDPFQFVGMKQPSPPPVL 294
Query: 348 EVIQRALAYLA---TAPPQP 398
+ + LA + A P+P
Sbjct: 295 AQVHQELAQICPSKVADPRP 314
>At3g54220.1 68416.m05993 scarecrow transcription factor, putative
nearly identical to SCARECROW [Arabidopsis thaliana]
GI:1497987
Length = 653
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +3
Query: 306 QPQGSHLPTPPPIPEVIQRALAYLATAPPQPE 401
Q Q H P PPPI + Q APPQPE
Sbjct: 225 QQQQQHKPPPPPIQQ--QERENSSTDAPPQPE 254
>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 162
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/65 (30%), Positives = 26/65 (40%)
Frame = +3
Query: 216 PALQVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPPQ 395
P Q G +YP GG Q Y P + PTPPP ++ Y T PP
Sbjct: 84 PPSQSGGGSKYPPPYGGGGQGYYYP-----PPYSGNYPTPPPPNPIVPYFPFYYHTPPPG 138
Query: 396 PENNR 410
++R
Sbjct: 139 SGSDR 143
>At5g16140.1 68418.m01885 peptidyl-tRNA hydrolase family protein
contains Pfam profile PF01195: peptidyl-tRNA hydrolase
Length = 240
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 168 YHFQSHKSIGRTHQARCCSPASG 100
YHFQ+ K + R + R CS SG
Sbjct: 11 YHFQTQKPVFRKQRFRVCSSTSG 33
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 210 EEPALQVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPI 344
+E + + P + TI+L+ + NG+ P+ P PPP+
Sbjct: 333 KETEFALSALMEIPQQYKATIELNLLGRRNGYIPE--RFPLPPPM 375
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 210 EEPALQVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPI 344
+E + + P + TI+L+ + NG+ P+ P PPP+
Sbjct: 333 KETEFALSALMEIPQQYKATIELNLLGRRNGYIPE--RFPLPPPM 375
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 210 EEPALQVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPI 344
+E + + P + TI+L+ + NG+ P+ P PPP+
Sbjct: 333 KETEFALSALMEIPQQYKATIELNLLGRRNGYIPE--RFPLPPPM 375
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 210 EEPALQVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPI 344
+E + + P + TI+L+ + NG+ P+ P PPP+
Sbjct: 333 KETEFALSALMEIPQQYKATIELNLLGRRNGYIPE--RFPLPPPM 375
>At5g58010.1 68418.m07258 basic helix-loop-helix (bHLH) family
protein bHLH transcription factor GBOF-1, Tulipa
gesneriana, EMBL:AF185269; contains Pfam profile
PF00010: Helix-loop-helix DNA-binding domain
Length = 297
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 237 QFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPI 344
QF +P E GG + ++ G QPQG+ T P+
Sbjct: 61 QFHHPQESGGPT----MGSQEGLQPQGTVSTTSAPV 92
>At4g29230.1 68417.m04181 no apical meristem (NAM) family protein
similar to NAM family proteins GP|12751304|,
GP|6223650|, GP|9758909 - Arabidopsis
thaliana,PIR2:T04621
Length = 498
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +1
Query: 316 DHIYPHHPQFLKSSSALSHTSPPHPHSL----KTTGHNYSVNLL 435
DH + HH Q + A + + P HP S T+ H+ S+N+L
Sbjct: 360 DHHHHHHQQQQQRHHAFNISQPTHPISTIISPSTSLHHASINIL 403
>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 489
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 195 KNIGAEEPALQVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPI 344
K+ +E + + P + TI+L+ + NG PQ +P PPP+
Sbjct: 362 KDQSRKETEFALSALMEIPPQYKATIELNLLGVRNGNIPQ--RIPLPPPV 409
>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein low similarity to
glucoamylase S1/S2 [Precursor] from Saccharomyces
cerevisiae [SP|P08640], proteophosphoglycan from
Leishmania major [GI:5420387]; contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 256
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 244 STQARTVVLSSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKTTGHN 417
ST A + +S SP + SS + P SS A+SH+ PP HS H+
Sbjct: 124 STPAASTPVSPPVESPTTSPSSAKS------PAITPSSPAVSHSPPPVRHSSPPVSHS 175
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = +3
Query: 204 GAEEPALQVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLAT 383
G EEP ++ SED G S + Q SH P ++ + AYLA
Sbjct: 375 GGEEPLYIARRLIRFASEDIGLADPSALTQAVACY-QASHFLGMPECNVILAQCTAYLAL 433
Query: 384 AP 389
AP
Sbjct: 434 AP 435
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +1
Query: 271 SSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKTTGHNYSVN 429
S+C + P + S H P P + S SHT PH S T H N
Sbjct: 56 SNCGSPPYDPSPSTPSH--PSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCN 106
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +1
Query: 271 SSCPTSPMRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKTTGHNYSVN 429
S+C + P + S H P P + S SHT PH S T H N
Sbjct: 56 SNCGSPPYDPSPSTPSH--PSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCN 106
>At1g54170.1 68414.m06175 ataxin-2-related similar to SCA2
(GI:1770390) [Homo sapiens]; similar to ataxin-2
(GI:3005020) [Mus musculus]
Length = 587
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 243 QYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPPQPE 401
Q+P T QLS N+ + P P P + + QR + ++ P QPE
Sbjct: 530 QHPMMYNNTTQLS--PNQTYYSPNSPQYPQPMMVTQ--QRPILFMPPTPYQPE 578
>At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 341
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 309 PQGSHLPTPPPIPEVIQRALAYLATAPPQPENN 407
P S LP PPP+P IQ A P P N
Sbjct: 29 PPSSSLP-PPPLPTEIQANPIVFAAVTPYPNPN 60
>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 388
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 309 PQGSHLPTPPPIPEVIQRALAYLATAPPQPENN 407
P S LP PPP+P IQ A P P N
Sbjct: 29 PPSSSLP-PPPLPTEIQANPIVFAAVTPYPNPN 60
>At2g35050.1 68415.m04300 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 1257
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 81 PTEPIPILKQESSIEPDGSYQYSYETGNGISAAERGALKNIGAEEPALQVE 233
P E PI+ Q SS PD S E + +E N+ A+EP ++ E
Sbjct: 525 PKEEAPIVTQTSSSTPDPSSSTLSE--KSLRKSEDHVENNLSAKEPKMRKE 573
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 324 LPTPPPIPEVIQRALAYLATAPPQP 398
LP+PPP P + A++ PP P
Sbjct: 437 LPSPPPTPPIADIAISMPPPPPPPP 461
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +1
Query: 229 LKVNSSTQARTVVLSSC-----PTSPMRTASSLRDHIYPHHPQFLKSSSAL 366
L + + QA T V++ C P++ S+ H +P H Q+L + + L
Sbjct: 915 LSIQAWQQAETTVINQCTQLLSPSAEPAYVSTYLSHSFPQHRQYLCAGACL 965
>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 554
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 309 PQGSHLPTPPPIPEVIQRALAYLATAPP 392
P + LP PPP+P +++ +A PP
Sbjct: 227 PGRAALPPPPPLPMAVRKGVAAPPLPPP 254
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,004,204
Number of Sequences: 28952
Number of extensions: 295972
Number of successful extensions: 1149
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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