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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0024
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38590.1 68417.m05462 glycosyl hydrolase family 35 protein si...    33   0.14 
At5g02950.1 68418.m00238 PWWP domain-containing protein predicte...    33   0.24 
At5g27280.1 68418.m03256 zinc finger (DNL type) family protein c...    32   0.42 
At5g67140.1 68418.m08464 F-box family protein similar to unknown...    31   0.97 
At3g60110.1 68416.m06712 DNA-binding bromodomain-containing prot...    31   0.97 
At2g34300.1 68415.m04196 dehydration-responsive protein-related ...    30   1.7  
At5g64980.1 68418.m08173 expressed protein                             29   3.0  
At5g05610.2 68418.m00611 PHD finger family protein contains Pfam...    29   3.9  
At5g05610.1 68418.m00610 PHD finger family protein contains Pfam...    29   3.9  
At5g33898.1 68418.m04020 hypothetical protein                          28   6.8  
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso...    28   6.8  
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains...    28   6.8  
At2g35700.1 68415.m04378 AP2 domain-containing transcription fac...    28   6.8  
At1g63430.1 68414.m07173 leucine-rich repeat transmembrane prote...    28   6.8  
At1g01440.1 68414.m00059 extra-large G-protein-related weak simi...    28   6.8  
At5g26210.1 68418.m03119 PHD finger family protein contains Pfam...    27   9.0  
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains...    27   9.0  
At3g57300.1 68416.m06378 transcriptional activator, putative sim...    27   9.0  

>At4g38590.1 68417.m05462 glycosyl hydrolase family 35 protein
           similar to beta-galactosidase GI:7939621 from
           [Lycopersicon esculentum]; contains Pfam profile PF01301
           : Glycosyl hydrolases family 35
          Length = 988

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +1

Query: 460 KTCSELIKAGLKLSIESKRKMSGSDTDVSVKRLKKEESDE-DYDSSHTQQAKNEGNNRTT 636
           K C E++K    L+++ K +      D   K+  K+E +E D D    ++ +++ N  T 
Sbjct: 752 KGCPEIVKT---LAVQVKCEKKEGKQDEKKKKEDKDEEEEDDEDDDEEEEEEDKENKDTK 808

Query: 637 DSHQELCDLLDS 672
           D   +  D+LDS
Sbjct: 809 DMENKNQDILDS 820


>At5g02950.1 68418.m00238 PWWP domain-containing protein predicted
           protein, Arabidopsis thaliana
          Length = 632

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 505 ESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQ 606
           E KRK+  S++  S KR+KK +  ED  S H+ +
Sbjct: 350 EKKRKVESSESGKSEKRIKKSQQKEDSVSKHSNE 383


>At5g27280.1 68418.m03256 zinc finger (DNL type) family protein
           contains Pfam profile PF05180: DNL zinc finger
          Length = 212

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +1

Query: 496 LSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQELCDLL 666
           LSI S +K + S     + RL  ++ D+DYD  H++   +      T S+ E   L+
Sbjct: 20  LSIFSPKKRTDSSPPPRIVRLSNKKEDKDYDPQHSESNSSSLFRNRTLSNDEAMGLV 76


>At5g67140.1 68418.m08464 F-box family protein similar to unknown
           protein (dbj|BAA78736.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 228

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = -2

Query: 351 VIILVQGVCHGDDIVYNLRRTKRSICSLGGQHVYHSST*IHINTQIVRSTFSVRS*--SN 178
           V+    GVC       N    +R   S  G  +   ST     +++V   F+++    S 
Sbjct: 27  VLAQASGVCKKWRKAVNQSMARRETLSFAGWKMDDDST-----SRLVHLAFNLKELDISR 81

Query: 177 RRWRCILTFNCRYSRAHARCV 115
            RW C +T N  Y  A ARCV
Sbjct: 82  SRWGCHITDNGLYQIASARCV 102


>At3g60110.1 68416.m06712 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 438

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 547 VKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQELCD 660
           +KR+KK    +  +++   Q KN+GN +  + HQ+  D
Sbjct: 333 LKRIKKNSPQKGKETTSKNQKKNDGNVKKENDHQKKSD 370


>At2g34300.1 68415.m04196 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 770

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 523 SGSDT--DVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQELCD 660
           S +DT  DVS   L+KEE D D    +    KNE N   T+++Q   D
Sbjct: 51  SSTDTAKDVSKNDLRKEEGDRD--PKNFSDEKNEENEAATENNQVKTD 96


>At5g64980.1 68418.m08173 expressed protein
          Length = 344

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/68 (17%), Positives = 37/68 (54%)
 Frame = +1

Query: 469 SELIKAGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQ 648
           S L+K  +++   +  ++SGS + V  +R    +S + +   ++++ ++    R+ ++++
Sbjct: 144 SSLVKPSIRVQSRTNNELSGSSSKVPGRRRSSRKSVQPWSPDYSEKLRS-WKKRSNNNNR 202

Query: 649 ELCDLLDS 672
           +   L D+
Sbjct: 203 DFSQLFDN 210


>At5g05610.2 68418.m00611 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 241

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +1

Query: 565 EESDEDYDSSHTQQAKNE-GNNRTTDSHQELCDLLDSMYTGK 687
           EES ED D  H        G N T D     CD+ +  Y GK
Sbjct: 173 EESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGK 214


>At5g05610.1 68418.m00610 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 241

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +1

Query: 565 EESDEDYDSSHTQQAKNE-GNNRTTDSHQELCDLLDSMYTGK 687
           EES ED D  H        G N T D     CD+ +  Y GK
Sbjct: 173 EESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGK 214


>At5g33898.1 68418.m04020 hypothetical protein
          Length = 248

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 562 KEESDEDYDSSHTQQAKNEGNNRTTDSHQE 651
           +E+ DED DS+  ++ KN+  N  ++S+ E
Sbjct: 92  EEDDDEDEDSNPWKRVKNDKKNEASNSNLE 121


>At4g37820.1 68417.m05351 expressed protein Kaposi's
           sarcoma-associated herpes-like virus ORF73gene, Kaposi's
           sarcoma-associated herpesvirus, U52064
          Length = 532

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 454 IQKTCSELIKAGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRT 633
           ++ T S   + G +   +  ++ SG+DT        KE  D   DSS T+  K E NNR 
Sbjct: 432 VESTDSSNTQKGDEQKTDESKRESGNDTS------NKETED---DSSKTESEKKEENNRN 482

Query: 634 TDSHQ 648
            ++ +
Sbjct: 483 GETEE 487


>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 500

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = +1

Query: 550 KRLKKEESDEDYDSSHT----QQAKNEGNNRTTD-SHQELCDLLDSMYT 681
           +R KKEE +ED D  +T       KNEG N+ +  +   L + +D +++
Sbjct: 309 QRKKKEEEEEDGDDKNTIEKKMMMKNEGENKESKVTLSGLLNFIDGLWS 357


>At2g35700.1 68415.m04378 AP2 domain-containing transcription
           factor, putative pFAM domain (PF00847)
          Length = 194

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 121 TSMSSTIPTIKCEDTSPSPVALGSDGESGTYNLSVNVN 234
           TS  S  PT+  E +SP+ +AL  D  S   +L +NVN
Sbjct: 137 TSSPSPSPTVT-ETSSPAMIALSDDAFSDLPDLLLNVN 173


>At1g63430.1 68414.m07173 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00069
           Eukaryotic protein kinase domain, PF00560 Leucine Rich
           Repeat; contains 1 predicted transmembrane domain
          Length = 664

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +1

Query: 502 IESKRKMSGSDTDVSVKRLKKEESD---EDYDSSHTQQAKNEGNNRTTDSHQELCDLLDS 672
           +E+   MSG   D  +K   +E+ +   E       +   N  NN    S QELC+ L+S
Sbjct: 582 LEAPEAMSGL-VDPELKHFNQEDLETVCEVASQCLNRDPTNNNNNHNKPSVQELCETLES 640

Query: 673 MYTGKLTPE 699
             +  ++ E
Sbjct: 641 RISLSISAE 649


>At1g01440.1 68414.m00059 extra-large G-protein-related weak
           similarity to extra-large G-protein  (AtXLG1)
           (GI:3201682) [Arabidopsis thaliana]
          Length = 664

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +1

Query: 469 SELIKAGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQ 648
           +E   + ++  ++      GS   V   R K+EE+D D  SS     +N     T     
Sbjct: 28  NESATSPMRNRLDDSNSRPGSQRFVKSSR-KEEETDSDSSSSKNTTTRNNPIQYTDKQQA 86

Query: 649 ELCDLLDSM 675
           EL   LDS+
Sbjct: 87  ELLRKLDSI 95


>At5g26210.1 68418.m03119 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 255

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/78 (23%), Positives = 29/78 (37%)
 Frame = +1

Query: 454 IQKTCSELIKAGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRT 633
           +    S   K+  K   ES+ K S  +     +  ++   +ED D     Q    G +  
Sbjct: 151 VSNNSSNRSKSSSKRGSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYA 210

Query: 634 TDSHQELCDLLDSMYTGK 687
            D     CDL +  + GK
Sbjct: 211 ADEFWICCDLCEMWFHGK 228


>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family; similar to
           Spastin (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin
           (Fragment) (Swiss-Prot:Q9QYY8) [Mus musculus]; similar
           to mitochondrial sorting protein 1 (MSP1) protein
           (TAT-binding homolog 4) (Swiss-Prot:P28737)
           [Saccharomyces cerevisiae]
          Length = 1265

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -2

Query: 390 VISASVLETGILFVIILVQGVCHGDDIVYNLRRTKRSICSLGGQHVY 250
           V S  +L  G   VI+ V G C+      +LR     I SL G+H Y
Sbjct: 198 VASLEILGNG---VIVHVNGKCYQKSTCVHLRGGDEVIFSLNGKHAY 241


>At3g57300.1 68416.m06378 transcriptional activator, putative
           similar to transcriptional activator SRCAP [Homo
           sapiens] GI:5106572; contains Pfam profiles PF00271:
           Helicase conserved C-terminal domain, PF00176: SNF2
           family N-terminal domain
          Length = 1507

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 198 SVRS*SNRRWRCILTFNCR 142
           +++S S+ RW+ +L+FNCR
Sbjct: 724 AIKSSSSIRWKTLLSFNCR 742


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.309    0.125    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,511,843
Number of Sequences: 28952
Number of extensions: 271755
Number of successful extensions: 818
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)

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