Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0013
         (472 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12920.1 68418.m01482 expressed protein contains 3 weak WD-40...    27   6.4  
At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom...    27   8.5  

>At5g12920.1 68418.m01482 expressed protein contains 3 weak WD-40
           repeats (PF00400); low similarity to MEK kinase alpha
           (GI:4028547); transcriptional repressor TUP1
           (GI:3406654) [Dictyostelium discoideum]; Eukaryotic
           translation initiation factor 3 subunit 2 (eIF-3 beta)
           (eIF3 p36) (TGF-beta receptor interacting protein 1)
           (TRIP-1) (SP:Q38884) [Arabidopsis thaliana]
          Length = 442

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 213 KETSRNAKKEKCQ*KDWFIPTRKKTQGC 296
           ++T RN K++KC  ++ F+   +   GC
Sbjct: 378 EDTQRNEKRDKCNHRNKFVSLSETVTGC 405


>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
           domain-containing protein contains Pfam profiles
           PF00168: C2 domain; contains PF02893: GRAM domain;
           similar to Chain A, Crystal Structure Of Synaptotagmin
           Iii C2aC2B Length(GI:6980525); similar to Synaptotagmin
           III (SytIII) (Swiss-Prot:P40748) [Rattus norvegicus]
          Length = 1859

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 184 QRDLARAKNQKKQVEMQKKKNASEKTGLSLQ 276
           Q+++ +AKN++ Q+E   K+  + K  LS Q
Sbjct: 653 QKEVTKAKNRQNQIEAALKQERTAKGKLSAQ 683


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,822,386
Number of Sequences: 28952
Number of extensions: 123722
Number of successful extensions: 273
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)