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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0009
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56450.1 68414.m06492 20S proteasome beta subunit G1 (PBG1) (...   132   2e-31
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P...    36   0.020
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P...    35   0.060
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P...    35   0.060
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id...    35   0.060
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id...    35   0.060
At5g45430.1 68418.m05582 protein kinase, putative contains simil...    29   3.0  
At3g55140.2 68416.m06124 pectate lyase family protein similar to...    29   3.9  
At3g55140.1 68416.m06123 pectate lyase family protein similar to...    29   3.9  
At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR cla...    29   3.9  
At1g07725.1 68414.m00833 exocyst subunit EXO70 family protein co...    28   5.2  
At5g04140.2 68418.m00402 glutamate synthase (GLU1) / ferredoxin-...    27   9.0  
At5g04140.1 68418.m00401 glutamate synthase (GLU1) / ferredoxin-...    27   9.0  
At4g05090.1 68417.m00756 inositol monophosphatase family protein...    27   9.0  
At1g01620.1 68414.m00079 plasma membrane intrinsic protein 1C (P...    27   9.0  

>At1g56450.1 68414.m06492 20S proteasome beta subunit G1 (PBG1)
           (PRCH) identical to 20S proteasome beta subunit (PBG1)
           GI:3421123 [Arabidopsis thaliana]; identical to cDNA
           proteasome subunit prch GI:2511597
          Length = 246

 Score =  132 bits (319), Expect = 2e-31
 Identities = 55/149 (36%), Positives = 96/149 (64%)
 Frame = +1

Query: 208 PITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYL 387
           P  T T+++ +K+  G ++A D  GSYGS  R+++  RV  +    LLG  G+ +DFQ +
Sbjct: 27  PYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEI 86

Query: 388 KDIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQDGEPFLG 567
              + +  +++    DG  L P+ +H +LTRV+YN+R+K +PLWN+ V+ G+++G+ +LG
Sbjct: 87  LRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNGKSYLG 146

Query: 568 AVDKLGTAYEDAVISNGLGAYMATPLLRD 654
            V  +G ++ED  ++ G G ++A P+LRD
Sbjct: 147 MVSMIGVSFEDDHVATGFGNHLARPILRD 175


>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
           (PRCD) identical to cDNA proteasome subunit prcd
           GI:2511593
          Length = 233

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 18/66 (27%), Positives = 34/66 (51%)
 Frame = +1

Query: 205 SPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQY 384
           +P +  TT+IGV ++ G V+  D+  S G     R   ++ ++ D + +   G  AD Q 
Sbjct: 7   APHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQV 66

Query: 385 LKDIIQ 402
           + D ++
Sbjct: 67  VSDYVR 72


>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
           (PRCFC) identical to 20S proteasome beta subunit PBB2
           [Arabidopsis thaliana] GI:3421104, cDNA proteasome
           subunit prcfc GI:2511575
          Length = 274

 Score = 34.7 bits (76), Expect = 0.060
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +1

Query: 211 ITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 390
           + T TT++G+ F  G ++  DT  + G +   ++C ++  +   I     G  AD + + 
Sbjct: 36  LKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 95

Query: 391 DIIQQKI 411
           D++  ++
Sbjct: 96  DMVSSQL 102


>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
           (PRCFC) identical to 20S proteasome beta subunit PBB2
           [Arabidopsis thaliana] GI:3421104, cDNA proteasome
           subunit prcfc GI:2511575
          Length = 274

 Score = 34.7 bits (76), Expect = 0.060
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +1

Query: 211 ITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 390
           + T TT++G+ F  G ++  DT  + G +   ++C ++  +   I     G  AD + + 
Sbjct: 36  LKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 95

Query: 391 DIIQQKI 411
           D++  ++
Sbjct: 96  DMVSSQL 102


>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
           identical to 20S proteasome beta subunit PBB1 (PBB1)
           GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
           677-692 (1998)); contains Pfam profile: PF00227
           proteasome A-type and B-type;
          Length = 273

 Score = 34.7 bits (76), Expect = 0.060
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +1

Query: 211 ITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 390
           + T TT++G+ F  G ++  DT  + G +   ++C ++  +   I     G  AD + + 
Sbjct: 36  LKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 95

Query: 391 DIIQQKI 411
           D++  ++
Sbjct: 96  DMVSSQL 102


>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
           identical to 20S proteasome beta subunit PBB1 (PBB1)
           GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
           677-692 (1998)); contains Pfam profile: PF00227
           proteasome A-type and B-type;
          Length = 267

 Score = 34.7 bits (76), Expect = 0.060
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +1

Query: 211 ITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 390
           + T TT++G+ F  G ++  DT  + G +   ++C ++  +   I     G  AD + + 
Sbjct: 36  LKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 95

Query: 391 DIIQQKI 411
           D++  ++
Sbjct: 96  DMVSSQL 102


>At5g45430.1 68418.m05582 protein kinase, putative contains
           similarity to male germ cell-associated kinase [Homo
           sapiens] gi|23268497|gb|AAN16405
          Length = 499

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +1

Query: 520 NSYVVAGIQDGEPFLGAVDKLGTAYEDAVISNGLGAYMATPLLRDAVDKGPLDQE 684
           NSYV    +   PF   V+   TA  +A  SNG+  Y+A P +    D G   Q+
Sbjct: 342 NSYVTP--KTNAPFSNGVNSYVTAKTNAPFSNGVNNYVA-PKMNAPFDNGATQQK 393


>At3g55140.2 68416.m06124 pectate lyase family protein similar to
           pollen allergen Amb a 1.3 SP:P27761 from [Ambrosia
           artemisiifolia]
          Length = 307

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 433 DGLQLKPRSLHCWLTR 480
           DG+Q+KP+S H W+ R
Sbjct: 97  DGIQIKPKSRHIWIDR 112


>At3g55140.1 68416.m06123 pectate lyase family protein similar to
           pollen allergen Amb a 1.3 SP:P27761 from [Ambrosia
           artemisiifolia]
          Length = 331

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 433 DGLQLKPRSLHCWLTR 480
           DG+Q+KP+S H W+ R
Sbjct: 121 DGIQIKPKSRHIWIDR 136


>At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR class),
            putative domain signature NBS-LRR exists, suggestive of a
            disease resistance protein.
          Length = 1054

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 583  PIYQQLRERVHHPEYRQPHSCSRGDPSCSSCCRGHESTSSA 461
            P+ QQ   + HHP++  P S   G P      R ++S SS+
Sbjct: 1013 PMEQQ--PQYHHPQFHLPRSNVSGSPKSHGSHRSYDSRSSS 1051


>At1g07725.1 68414.m00833 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 566

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/79 (25%), Positives = 33/79 (41%)
 Frame = +1

Query: 400 QQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQDGEPFLGAVDK 579
           QQ+   E  +GD ++     +  W+T  L +  S    L + +      +G  FL  + K
Sbjct: 19  QQQGFSESLIGDSVEAADAFICQWVTPHLCDSSSSSCSLSSLFSAQNRLEGRRFLEVLGK 78

Query: 580 LGTAYEDAVISNGLGAYMA 636
           L  A +  V  N   A +A
Sbjct: 79  LQYAIQSTVAMNPDSAKLA 97


>At5g04140.2 68418.m00402 glutamate synthase (GLU1) /
            ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
            identical to ferredoxin-dependent glutamate synthase
            precursor [Arabidopsis thaliana] GI:3869251
          Length = 1648

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 520  NSYVVAGIQDGEPFLGAVDKLGTAYEDAVISNGLGAYMAT 639
            N YV  G+  GE  +  V+K+G   E+A I      Y AT
Sbjct: 1456 NDYVGKGMAGGEIVVTPVEKIGFVPEEATIVGNTCLYGAT 1495


>At5g04140.1 68418.m00401 glutamate synthase (GLU1) /
            ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
            identical to ferredoxin-dependent glutamate synthase
            precursor [Arabidopsis thaliana] GI:3869251
          Length = 1622

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 520  NSYVVAGIQDGEPFLGAVDKLGTAYEDAVISNGLGAYMAT 639
            N YV  G+  GE  +  V+K+G   E+A I      Y AT
Sbjct: 1430 NDYVGKGMAGGEIVVTPVEKIGFVPEEATIVGNTCLYGAT 1469


>At4g05090.1 68417.m00756 inositol monophosphatase family protein
           low similarity to SP|Q42546 3'(2'),5'-bisphosphate
           nucleotidase (EC 3.1.3.7) (DPNPase) {Arabidopsis
           thaliana}; contains Pfam profile PF00459: Inositol
           monophosphatase family
          Length = 397

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 362 ETMLIFSI*RISFNKKSLMSAVLEMVSSSSPVL 460
           E  LIF    +  +  SL + +LEM+SS+SP L
Sbjct: 365 ERRLIFPAGGVVVSNGSLHNQILEMISSASPTL 397


>At1g01620.1 68414.m00079 plasma membrane intrinsic protein 1C
           (PIP1C) / aquaporin PIP1.3 (PIP1.3) / transmembrane
           protein B (TMPB) identical to plasma membrane intrinsic
           protein 1c SP:Q08733 from [Arabidopsis thaliana]
          Length = 286

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 112 PSPGAFYNFPGNASTIAPSRHGVQDFTAHSASPITTTTTVIGVK 243
           P P  F+  PG  S+ +  R G+ +F A       T  TV+GVK
Sbjct: 34  PPPAPFFE-PGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVK 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,752,644
Number of Sequences: 28952
Number of extensions: 338782
Number of successful extensions: 1078
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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