Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A12
         (1062 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32350.1 68417.m04605 expressed protein contains Pfam profile...    32   0.56 
At1g75140.1 68414.m08728 expressed protein                             31   1.3  
At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family...    29   3.9  
At4g00840.1 68417.m00115 zinc finger (DHHC type) family protein ...    28   9.1  
At3g51290.1 68416.m05614 proline-rich family protein                   28   9.1  
At3g43583.1 68416.m04636 hypothetical protein                          28   9.1  
At1g20130.1 68414.m02518 family II extracellular lipase, putativ...    28   9.1  

>At4g32350.1 68417.m04605 expressed protein contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 732

 Score = 32.3 bits (70), Expect = 0.56
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 134 ERSSFYASWLRREVSD-HQPIFKVSPTPSRYSRLCHLGQGNGGREGLRD 277
           ER  FY    +    + HQPIF    T        +LGQGNG R G+ D
Sbjct: 279 ERKEFYLHSKQNPAREKHQPIFNEGDTIVMKVNYGNLGQGNGHRPGVVD 327


>At1g75140.1 68414.m08728 expressed protein
          Length = 617

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +2

Query: 95  PRCCYPAALLXMRERSSFYASWLRREVSDHQPIFKVSP-TPSRYSRLCHLGQGNG 256
           PR  +PAAL  +R  S+F +     + +DHQ + KV+P   S   +L  +G G+G
Sbjct: 402 PRLLFPAALEDIR--STFLSHRESTKTTDHQKLEKVTPLIASDREKLLVMGLGDG 454


>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 205

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +1

Query: 829 HRXPXXHXXXPXXXPSPXPXPXPXPPPXXXXXXP 930
           H  P  H   P   P P P P P PPP      P
Sbjct: 42  HHPPPPHFSPPHQPP-PSPYPHPHPPPPSPYPHP 74


>At4g00840.1 68417.m00115 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 262

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 246 REMGGGKVFGTLGESDQGLFGKGGY 320
           REMGGG        +DQG FG  GY
Sbjct: 23  REMGGGDSLEAGTSTDQGAFGSLGY 47


>At3g51290.1 68416.m05614 proline-rich family protein 
          Length = 602

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 847 HXXXPXXXPSPXPXPXPXPPP 909
           H   P   P P P P P PPP
Sbjct: 65  HHNPPSPSPPPPPPPRPPPPP 85


>At3g43583.1 68416.m04636 hypothetical protein
          Length = 100

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 859 PXXXPSPXPXPXPXPPP 909
           P   PSP P P P PPP
Sbjct: 23  PEKPPSPEPPPSPEPPP 39


>At1g20130.1 68414.m02518 family II extracellular lipase, putative
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
          Length = 1006

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 859 PXXXPSPXPXPXPXPPP 909
           P   PSP P P P PPP
Sbjct: 28  PSPCPSPPPKPQPKPPP 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,669,835
Number of Sequences: 28952
Number of extensions: 364697
Number of successful extensions: 1735
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2627750416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)