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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A04
         (963 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta...   126   2e-29
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta...   124   7e-29
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta...    41   0.001
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta...    40   0.002
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati...    39   0.004
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati...    35   0.070
At2g36650.1 68415.m04495 expressed protein                             30   2.6  
At2g16640.1 68415.m01910 chloroplast outer membrane protein, put...    29   3.5  
At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putati...    29   6.1  
At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putati...    29   6.1  
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati...    28   8.0  

>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
           putative / snRNP-E, putative / Sm protein E, putative
           similar to SWISS-PROT:P08578 small nuclear
           ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
           [Chicken]
          Length = 88

 Score =  126 bits (305), Expect = 2e-29
 Identities = 55/79 (69%), Positives = 70/79 (88%)
 Frame = +2

Query: 164 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 343
           KVQ++M QPINLIFR+LQ+++R+QIWL+E  +LRIEG I GFDEYMN+VLDEAEEV +K 
Sbjct: 5   KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKK 64

Query: 344 KNRKQIGRIMMKGDNITLI 400
           K RK +GRI++KGDNITL+
Sbjct: 65  KTRKPLGRILLKGDNITLM 83


>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
           putative / snRNP-E, putative / Sm protein E, putative
           similar to SWISS-PROT:P08578 small nuclear
           ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
           [Chicken]
          Length = 88

 Score =  124 bits (300), Expect = 7e-29
 Identities = 54/79 (68%), Positives = 69/79 (87%)
 Frame = +2

Query: 164 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 343
           KVQ++M QPINLIFR+LQ+++R+QIWL+E  +LRIEG I GFDEYMN+VLDEAEEV +K 
Sbjct: 5   KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKK 64

Query: 344 KNRKQIGRIMMKGDNITLI 400
             RK +GRI++KGDNITL+
Sbjct: 65  NTRKPLGRILLKGDNITLM 83


>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
           putative / snRNP-G, putative / Sm protein G, putative
           similar to small nuclear ribonucleoprotein G (snRNP-G,
           Sm protein G, Sm-G, SmG) [Homo sapiens]
           SWISS-PROT:Q15357
          Length = 80

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/66 (25%), Positives = 41/66 (62%)
 Frame = +2

Query: 206 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGD 385
           +Y+  + ++++    N N  + G + GFD++MN+V+D   EV+    ++  IG ++++G+
Sbjct: 12  KYMDKKLQIKL----NANRMVTGTLRGFDQFMNLVVDNTVEVN--GNDKTDIGMVVIRGN 65

Query: 386 NITLIQ 403
           +I  ++
Sbjct: 66  SIVTVE 71


>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
           putative / snRNP-G, putative / Sm protein G, putative
           similar to SWISS-PROT:Q15357 small nuclear
           ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
           [Homo sapiens]
          Length = 79

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/66 (25%), Positives = 41/66 (62%)
 Frame = +2

Query: 206 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGD 385
           +Y+  + ++++    N N  + G + GFD++MN+V+D   EV+    ++  IG ++++G+
Sbjct: 12  KYMDKKLQIKL----NANRMVVGTLRGFDQFMNLVVDNTVEVN--GDDKTDIGMVVIRGN 65

Query: 386 NITLIQ 403
           +I  ++
Sbjct: 66  SIVTVE 71


>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to U6
           snRNA-associated Sm-like protein LSm5 [Homo sapiens]
           SWISS-PROT:Q9Y4Y9
          Length = 88

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 16/58 (27%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
 Frame = +2

Query: 233 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRK--QIGRIMMKGDNITLI 400
           +IW+    +  + G + GFD Y+N+VL++  E  + ++ R+  ++ +I++ G+NI ++
Sbjct: 21  KIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAIL 78


>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to U6
           snRNA-associated Sm-like protein LSm8 [Homo sapiens]
           SWISS-PROT:O95777
          Length = 98

 Score = 35.1 bits (77), Expect = 0.070
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +2

Query: 251 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQ---IGRIMMKGDNITLI 400
           N    I G + GFD+  NI+LDE+ E    +K   Q   +G  +++GDNI +I
Sbjct: 20  NDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVI 72


>At2g36650.1 68415.m04495 expressed protein
          Length = 373

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 251 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKN 349
           N+   +EG +   + Y++++ +E EE+ MKS N
Sbjct: 210 NIVKELEGKVKDMEAYVDVLQEEKEELFMKSSN 242


>At2g16640.1 68415.m01910 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 1206

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 337 EIEKQKTNRKNNDEGRQHNTHTEREPQRVS 426
           E+EKQ+++R + D     N+H E EP+ VS
Sbjct: 404 ELEKQQSSRVHVDPEITENSHVETEPEVVS 433


>At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to U6
           snRNA-associated Sm-like protein LSm7 [Homo sapiens]
           SWISS-PROT:Q9UK45
          Length = 99

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 7/53 (13%)
 Frame = +2

Query: 263 RIEGHIVGFDEYMNIVLDEAEEV---H---MKSKNR-KQIGRIMMKGDNITLI 400
           ++ G + G+D+ +N+VLDEA E    H   +K+ ++ +++G I+ +G  + L+
Sbjct: 28  QVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLV 80


>At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to U6
           snRNA-associated Sm-like protein LSm7 [Homo sapiens]
           SWISS-PROT:Q9UK45
          Length = 99

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 7/53 (13%)
 Frame = +2

Query: 263 RIEGHIVGFDEYMNIVLDEAEEV---H---MKSKNR-KQIGRIMMKGDNITLI 400
           ++ G + G+D+ +N+VLDEA E    H   +K+ ++ +++G I+ +G  + L+
Sbjct: 28  QVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLV 80


>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to
           SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
           LSm3 (MDS017) [Mouse]
          Length = 97

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +2

Query: 185 QPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEV 331
           +P++LI   L    R+ + L  +  LR  G +  FD+++N++L + EEV
Sbjct: 11  EPLDLI--RLSIEERIYVKLRSDRELR--GKLHAFDQHLNMILGDVEEV 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,871,741
Number of Sequences: 28952
Number of extensions: 267944
Number of successful extensions: 827
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2324382072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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