Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_A09
(809 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 45 7e-05
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 42 5e-04
At3g28730.1 68416.m03587 structure-specific recognition protein ... 40 0.003
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 33 0.30
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 33 0.30
At5g19810.1 68418.m02354 proline-rich extensin-like family prote... 31 0.90
At5g03140.1 68418.m00262 lectin protein kinase family protein co... 31 0.90
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 31 0.90
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 31 1.2
At1g05730.1 68414.m00597 expressed protein contains Pfam profile... 31 1.2
At5g66840.1 68418.m08427 SAP domain-containing protein contains ... 30 1.6
At2g44430.1 68415.m05525 DNA-binding bromodomain-containing prot... 30 1.6
At5g13210.1 68418.m01516 expressed protein 30 2.1
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 30 2.1
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 30 2.1
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 29 2.8
At2g31725.1 68415.m03872 expressed protein 29 2.8
At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1) domain... 29 2.8
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 29 2.8
At1g48950.1 68414.m05485 expressed protein 29 3.7
At1g28540.1 68414.m03511 expressed protein 29 3.7
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 29 3.7
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ... 29 4.8
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 29 4.8
At5g38560.1 68418.m04662 protein kinase family protein contains ... 28 6.4
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 28 6.4
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 28 6.4
At2g40070.1 68415.m04923 expressed protein 28 6.4
At2g16440.1 68415.m01883 DNA replication licensing factor, putat... 28 6.4
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family... 28 6.4
At1g15770.1 68414.m01892 expressed protein 28 6.4
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 28 8.4
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 28 8.4
At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase, pu... 28 8.4
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro... 28 8.4
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 44.8 bits (101), Expect = 7e-05
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = +1
Query: 511 TGYILYSSEVRKAVIANNPEATFGDISRIVGNEWRSLPAATKQSWEERAARCNEETAARL 690
+ Y+L+ + V NPEA F + S I+G +W+SL A K+ +EER E +
Sbjct: 143 SSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEERYQVEKEAYLQVI 202
Query: 691 ADEMRE 708
A E RE
Sbjct: 203 AKEKRE 208
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = +1
Query: 511 TGYILYSSEVRKAVIANNPEATFGDISRIVGNEWRSLPAATKQSWEERAARCNEETAARL 690
T YIL+ + V NPEA F + S I+G +W+ + A K+ +EE+ E +
Sbjct: 134 TPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEKYQADKEAYLQVI 193
Query: 691 ADEMRE 708
E RE
Sbjct: 194 TKEKRE 199
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 39.5 bits (88), Expect = 0.003
Identities = 13/50 (26%), Positives = 31/50 (62%)
Frame = +1
Query: 508 VTGYILYSSEVRKAVIANNPEATFGDISRIVGNEWRSLPAATKQSWEERA 657
++G++ +S R + +P FG++ +++G++WR + A K+ +E +A
Sbjct: 566 MSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKA 615
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 32.7 bits (71), Expect = 0.30
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +2
Query: 527 TPARCGRRS*PTTRRLHSATYRASWATSGARCPPPPSRAGRSEPRAATR-RPPPGSPTRC 703
+P+R RS +R L S++ + +SG+R PP R G+S A R R PP P++
Sbjct: 29 SPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPP---RRGKSPAGPARRGRSPPPPPSKG 85
Query: 704 AS 709
AS
Sbjct: 86 AS 87
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 32.7 bits (71), Expect = 0.30
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +2
Query: 527 TPARCGRRS*PTTRRLHSATYRASWATSGARCPPPPSRAGRSEPRAATR-RPPPGSPTRC 703
+P+R RS +R L S++ + +SG+R PP R G+S A R R PP P++
Sbjct: 29 SPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPP---RRGKSPAGPARRGRSPPPPPSKG 85
Query: 704 AS 709
AS
Sbjct: 86 AS 87
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 249
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 623 PPPPSRAGRSEPRAATRRPPPGSPTRCASWRNT 721
PPPP+ P TR PPP P A ++ T
Sbjct: 161 PPPPTVTRPPPPPTITRSPPPPRPQAAAYYKKT 193
>At5g03140.1 68418.m00262 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 711
Score = 31.1 bits (67), Expect = 0.90
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 280 FTNLINTTIGSQDVEMILENSLDDSSLASPATPLSTGGNSNPYNPSLSVTPSQERIASQT 459
F +T GS ++ + S S S +P + P +PS S+TPS + +T
Sbjct: 238 FVGFSGSTQGSTEIHSVDWWSFSSSFEESSESPPPMPNSPPPSSPSSSITPSLSTVRRKT 297
Query: 460 ATP 468
A P
Sbjct: 298 ADP 300
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 31.1 bits (67), Expect = 0.90
Identities = 22/51 (43%), Positives = 23/51 (45%)
Frame = +2
Query: 530 PARCGRRS*PTTRRLHSATYRASWATSGARCPPPPSRAGRSEPRAATRRPP 682
PAR R P RR S T A R P PP+R RS P A RR P
Sbjct: 326 PARRRRSPSPPARRHRSPTPPARQR----RSPSPPARRHRSPPPARRRRSP 372
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +2
Query: 566 RRLHSATYRASWATSGARCPPPPSRAGRSEPRAATRRPPPGSPTR 700
R H ++ + R P PP+R RS A RR P P R
Sbjct: 294 RPTHEGRRQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPAR 338
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +2
Query: 527 TPARCGRRS*PTTRRLHSATY--RASWATSGARCP-PPPSRAGRSEPRAATRRPPP 685
+P+ R PT RL S + R R P PPP RAG P A R P P
Sbjct: 427 SPSPVARLRDPTGARLPSPSIEQRLPSPPVAQRLPSPPPRRAGLPSPPPAQRLPSP 482
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 623 PPPPSRAGRSEPRAATRRPPPGSPTRCASWRNTQQ 727
PPPP + RS P + PPP P S N +Q
Sbjct: 602 PPPPPPSSRSIPSPSAPPPPPPPPPSFGSTGNKRQ 636
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +2
Query: 533 ARCGRRS*PTTRRLHSATYRASWATSGARCPPPPSRAGRSE-PRAATRRPPPGSPTR 700
A+C P HS + R ++ PPPP +A S P+ P P S TR
Sbjct: 654 AKCAPPPPPPPPTSHSGSIRVGPPSTPPPPPPPPPKANISNAPKPPAPPPLPPSSTR 710
>At1g05730.1 68414.m00597 expressed protein contains Pfam profile
PF05811: Eukaryotic protein of unknown function (DUF842)
Length = 149
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +1
Query: 619 LPAATKQSWEERAARCNEETAARLADEMRELAQHT--TMEMTY-ECXWDTCDC--QFEDL 783
+ AA +Q ER R EE A ++ + H T++ Y +C ++ D + E++
Sbjct: 4 IAAAEEQIVTERIRRKLEEVNATAQSQLSPIQDHINFTLQQAYFKCAYECFDRNRKQEEI 63
Query: 784 TDCMEHC 804
+C+EHC
Sbjct: 64 ANCVEHC 70
>At5g66840.1 68418.m08427 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 551
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/57 (31%), Positives = 22/57 (38%)
Frame = +2
Query: 557 PTTRRLHSATYRASWATSGARCPPPPSRAGRSEPRAATRRPPPGSPTRCASWRNTQQ 727
P HS TY + R PPP S ++ +RPPP S T T Q
Sbjct: 373 PNIPPYHSYTYSEQQNQTNQR-PPPASYTYSTQQNQTNQRPPPASYTYPTQQNQTNQ 428
>At2g44430.1 68415.m05525 DNA-binding bromodomain-containing protein
contains Pfam domains, Pfam PF00439: Bromodomain and
PF00249: Myb-like DNA-binding domain
Length = 646
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 408 QPVPERNAQSGTDRKPDRDPGHREEEEGTEAKDRHRLHTVLQRGAEGGHSQQPG 569
+P R SG D+ PD DP +++ E + + RG+E HS + G
Sbjct: 233 EPSQTREDDSGNDKNPDPDPVNKDATAAEEEEGS------VSRGSEASHSDELG 280
>At5g13210.1 68418.m01516 expressed protein
Length = 673
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +3
Query: 423 RNAQSGTDRKPDRDPGHREEEEGTEAK---DRHRLHTVLQRGAEGGHSQQPGGYIRRHIA 593
R Q RK + + + E + + D H H L G G S +P R+ +A
Sbjct: 160 RILQGSEIRKIQKSERFKRKSEALDRRAPYDGHCYHGRLY-GGRGRGSSRPSSK-RKPVA 217
Query: 594 HRGQRVALAARRHQAELGGAS 656
R RVA A R++QAE AS
Sbjct: 218 TRALRVANAERKNQAEKARAS 238
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +2
Query: 536 RCGRRS*PTTRRLHSATYRASWATSGARCPPPPSRAGRSEP----RAATRRPPP 685
R RS R S +Y + AR PPPP R S P R+ +R PPP
Sbjct: 124 RSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRSPPP 177
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 444 DRKPDRDPGHREEEEGTEAKDRHRLHTVLQRGAE 545
DR+PDR +E EE +A+++ R+ +++R E
Sbjct: 124 DREPDRRNREKEREEEVKAREKARVEKLVEREKE 157
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 623 PPPPSRAGRSEPRAATRRPPPGSP 694
P PP++ S P+ T +PPP +P
Sbjct: 128 PKPPTKPPPSTPKPPTTKPPPSTP 151
>At2g31725.1 68415.m03872 expressed protein
Length = 149
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +1
Query: 619 LPAATKQSWEERAARCNEETAARLADEMRELAQHT--TMEMTY-ECXWDTCDCQF--EDL 783
+ AA +Q ER R EE ++ + H T++ Y +C ++ D + E++
Sbjct: 4 IAAAEEQIVSERLRRKLEEVNVAAQTQLSPIQDHINFTLQQAYFKCAYECFDRRRKQEEI 63
Query: 784 TDCMEHC 804
++C+EHC
Sbjct: 64 SNCVEHC 70
>At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile PF00564:
PB1 domain
Length = 174
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 614 ARCPPPPSRAGRSEPRAATRRPP-PGSPTRCAS 709
A PPPS S ++ +R PP P +P C S
Sbjct: 115 ANSSPPPSTTSSSSSKSRSRSPPSPSTPETCPS 147
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 629 PPSRAGRSEPRAATRRPPPGSPTRCASWRNTQQW 730
PP+ AG + P + PP + W+ QQW
Sbjct: 15 PPTSAGTTPPPPLQQSTPPPQQQQQQQWQQQQQW 48
>At1g48950.1 68414.m05485 expressed protein
Length = 608
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 265 DCKPQFTNLINTTIGSQDVEMILENSLDDSSLASPATPLSTGGNSNPYNPSLSVT 429
DCK + L T G++ ++++ E + + S +TP+ G + N NP+L T
Sbjct: 293 DCKDK---LSETARGTETIDLLPETATRELLSISESTPIPNGISGNNENPTLPDT 344
>At1g28540.1 68414.m03511 expressed protein
Length = 103
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 328 ILENSLDDSSLASPATP-LSTGGNSNPYNPSLSVTPSQERIASQ 456
I +N+ + SS A TP + +G YNP SV P Q + Q
Sbjct: 7 IPDNNNNTSSSAKKPTPEIGSGSGKRYYNPPESVNPDQATLREQ 50
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 420 ERNAQSGTDRKPDRDPGHREEEEGTEAKDRHR 515
E G DRK DR+ R+++E KDR R
Sbjct: 125 EHERDRGKDRKRDREREERKDKEREREKDRER 156
>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
contains Pfam domain, PF01207: Dihydrouridine synthase
(Dus)
Length = 700
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 620 CPPPPSRAGRSEPRAATRRPPPG 688
CPPPPSR+ + A R P G
Sbjct: 54 CPPPPSRSVKQNDAADVRAPQSG 76
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 533 ARCGRRS*PTTRRLHSATYRASWATSGARCPPPPSRAGRS-EPRAATRRPPP 685
+R RS P R+ + R S++ AR PPPP R S R +R PPP
Sbjct: 123 SRSRSRSPPRYRKSPTYGGRRSYSPR-ARSPPPPRRRSPSPRGRNYSRSPPP 173
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 623 PPPPSRAGRSEPRAATRRPPP 685
PPPP A S P T PPP
Sbjct: 115 PPPPPDASPSPPAPTTTNPPP 135
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 511 TGYILYSSEVRKAVIANNPEA-TFGDISRIVGNEWRSLPAATKQSWEERAARCNEE 675
+ + ++ + R NP + + G +W+S+ A K +EE+AA+ E
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAE 113
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 511 TGYILYSSEVRKAVIANNPEA-TFGDISRIVGNEWRSLPAATKQSWEERAARCNEE 675
+ + ++ + R NP + + G +W+S+ A K +EE+AA+ E
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAE 113
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 28.3 bits (60), Expect = 6.4
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Frame = +2
Query: 560 TTRRLHSATYRASWATSGARCPPPPSRAGRSEPRAATRRPP--------PGSPTRCASWR 715
T+R +S+T A A + S G S A+RRP P +PT +S
Sbjct: 139 TSRLANSSTESA--ARNHLTSRQQTSSPGLSSSSGASRRPSSSGGPGSRPATPTGRSSTL 196
Query: 716 NTQQWR*RTNAPGTRATVSSRT*PTAWSTAS 808
R + P +RATVSS T P+ ++ S
Sbjct: 197 TANSKSSRPSTPTSRATVSSATRPSLTNSRS 227
>At2g16440.1 68415.m01883 DNA replication licensing factor, putative
similar to SP|P49717 DNA replication licensing factor
MCM4 (CDC21 homolog) {Mus musculus}, SP|P29458 Cdc21
protein {Schizosaccharomyces pombe}; contains Pfam
profile PF00493: MCM2/3/5 family
Length = 847
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 590 RASWATSGARCPPPPSRAGRSEPRAATRRP 679
R+S T A PPPPSR S T RP
Sbjct: 42 RSSTPTQFATPPPPPSRLASSNSTPPTSRP 71
>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 185
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +2
Query: 557 PTTRRL-HSATYRASWATSGARCPPPPSR-AGRSEPRAATRRPPPGSP 694
PTT + H +R T+ + PPPP+ R A +P P SP
Sbjct: 26 PTTNTINHHYNHRRRLTTAAGQPPPPPANHLRRRTTTAVAGQPQPPSP 73
>At1g15770.1 68414.m01892 expressed protein
Length = 332
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 76 RVARKLKSGLRKFEHTKDVTVDEIYFFPKPLGPPALASTHDVQS 207
RVA KL+ LRK +T EI +PL +HD Q+
Sbjct: 121 RVAAKLQQSLRKTVQKLQLTKSEIQPMQQPLSQTVQDQSHDDQT 164
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 614 ARCPPPPSRAGRSEPRAATRRPPPGSP 694
A PPPP A + A RPPP +P
Sbjct: 367 ASAPPPPVPAPQMPSSAGPPRPPPPAP 393
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 614 ARCPPPPSRAGRSEPRAATRRPPPGSP 694
A PPPP A + A RPPP +P
Sbjct: 367 ASAPPPPVPAPQMPSSAGPPRPPPPAP 393
>At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase,
putative similar to cytosine-5 methyltransferase (METII)
[Arabidopsis thaliana] GI:6523846; contains Pfam profiles
PF01426: BAH domain, PF00145: C-5 cytosine-specific DNA
methylase
Length = 1404
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 40 VYVCESIYDESNRVARKLKSGLR-KFEHTKDVTV 138
VY C+ YD SN +KL + KF KD T+
Sbjct: 911 VYFCDRFYDSSNGCLKKLPYNMMLKFSTIKDDTL 944
>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
protein similar to mavicyanin SP:P80728 from [Cucurbita
pepo]
Length = 310
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +2
Query: 623 PPPPSRAGRSEPRAATRRPPPGSPTRCASWRNT 721
PPPPS+ R T PPP S T S NT
Sbjct: 123 PPPPSKT-HERSRPITPSPPPPSKTHEPSRPNT 154
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.127 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,208,723
Number of Sequences: 28952
Number of extensions: 310623
Number of successful extensions: 1337
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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