Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A11
         (915 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55220.1 68416.m06133 splicing factor, putative contains CPSF...    28   7.5  
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF...    28   7.5  
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P...    28   9.9  
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P...    28   9.9  

>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 395 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 306
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 395 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 306
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
           (PRCFC) identical to 20S proteasome beta subunit PBB2
           [Arabidopsis thaliana] GI:3421104, cDNA proteasome
           subunit prcfc GI:2511575
          Length = 274

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +2

Query: 11  KNVDDLYYSCYLFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHL 190
           KN + ++Y     +  C   +AA+ E  T    M+ S L  +  ++  DS++V  LTL  
Sbjct: 68  KNCEKIHYMAPN-IYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVVTALTLLK 123

Query: 191 RH 196
           +H
Sbjct: 124 KH 125


>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
           (PRCFC) identical to 20S proteasome beta subunit PBB2
           [Arabidopsis thaliana] GI:3421104, cDNA proteasome
           subunit prcfc GI:2511575
          Length = 274

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +2

Query: 11  KNVDDLYYSCYLFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHL 190
           KN + ++Y     +  C   +AA+ E  T    M+ S L  +  ++  DS++V  LTL  
Sbjct: 68  KNCEKIHYMAPN-IYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVVTALTLLK 123

Query: 191 RH 196
           +H
Sbjct: 124 KH 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,073,168
Number of Sequences: 28952
Number of extensions: 423749
Number of successful extensions: 1167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)