Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A10
         (858 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    31   0.98 
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    29   5.2  
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   5.2  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   5.2  
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    28   6.9  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   9.1  
At3g62370.1 68416.m07006 expressed protein                             28   9.1  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    28   9.1  

>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 507 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 361
           LG +H  PA +I+R P PP  +S   +++++F     E    +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -3

Query: 178 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 68
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 33  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -3

Query: 178 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 68
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 32  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 610 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 494
           +P  SNS P +VL   + A  + GD     H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 190 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLF 330
           G  +P + +SD +  INE+   P   +AK   +E   +   GK+  F
Sbjct: 70  GGGLPNNGVSDTNSQINEVTVTP-QVIAKETVKENGLQKNGGKRDEF 115


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 471 DRAPLPPNRVSNETMKVVVFQRRSRET 391
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 595 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 500
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 522 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 385
           S LC LG+  R PAD I+   L   R+    M  +V  R S + I+
Sbjct: 54  SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,037,935
Number of Sequences: 28952
Number of extensions: 380772
Number of successful extensions: 916
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)