Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A06
         (936 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24260.1 68417.m03481 endo-1,4-beta-glucanase, putative / cel...    29   3.4  
At3g63220.2 68416.m07103 kelch repeat-containing F-box family pr...    29   5.9  
At3g63220.1 68416.m07102 kelch repeat-containing F-box family pr...    29   5.9  
At5g49720.1 68418.m06157 endo-1,4-beta-glucanase KORRIGAN (KOR) ...    28   7.7  
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF...    28   7.7  
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF...    28   7.7  

>At4g24260.1 68417.m03481 endo-1,4-beta-glucanase, putative /
           cellulase, putative similar to
           endo-1,4-beta-D-glucanase; cellulase GI:5689613 from
           [Brassica napus]
          Length = 620

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 311 SDVAFSHSAALAIAKTN*ADNTILCKVFSHGVNTSYDYGST 189
           SD+A   +AALA A     DN +  K   HG  T Y + +T
Sbjct: 268 SDLAAEMAAALASASIVFKDNRLYSKNLVHGAKTLYRFATT 308


>At3g63220.2 68416.m07103 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 352

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 21/85 (24%), Positives = 38/85 (44%)
 Frame = +1

Query: 241 KIVLSAQFVLAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRE 420
           KIV++  F     S +  E     + +  S+   +   +   S +VVN  +H+ H  +  
Sbjct: 168 KIVVAGGFTTCRKSISGAEMYDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGL-- 225

Query: 421 SESTVRILADLQMNWIDKRLSWNAG 495
             STV++L  +++ W  K   W  G
Sbjct: 226 --STVQVLESVKLGWDVKDYGWPQG 248


>At3g63220.1 68416.m07102 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 345

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 21/85 (24%), Positives = 38/85 (44%)
 Frame = +1

Query: 241 KIVLSAQFVLAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRE 420
           KIV++  F     S +  E     + +  S+   +   +   S +VVN  +H+ H  +  
Sbjct: 161 KIVVAGGFTTCRKSISGAEMYDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGL-- 218

Query: 421 SESTVRILADLQMNWIDKRLSWNAG 495
             STV++L  +++ W  K   W  G
Sbjct: 219 --STVQVLESVKLGWDVKDYGWPQG 241


>At5g49720.1 68418.m06157 endo-1,4-beta-glucanase KORRIGAN (KOR) /
           cellulase (OR16pep) identical to
           endo-1,4-beta-D-glucanase KORRIGAN [Arabidopsis
           thaliana] GI:3978258; similar to
           endo-1,4-beta-D-glucanase; cellulase GI:5689613 from
           [Brassica napus]; identical to cDNA cellulase (OR16pep) 
           GI:1022806
          Length = 621

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -2

Query: 311 SDVAFSHSAALAIAKTN*ADNTILCKVFSHGVNTSYDYGST 189
           SD+A   +AALA A     DN    K   HG    Y +G T
Sbjct: 267 SDLAAEMAAALASASIVFKDNKEYSKKLVHGAKVVYQFGRT 307


>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 604 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 515
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 604 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 515
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,590,275
Number of Sequences: 28952
Number of extensions: 395162
Number of successful extensions: 975
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2236853040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)