Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30036
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 124 7e-29
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 123 1e-28
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 123 2e-28
07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993 29 4.7
06_03_0290 - 19193707-19193752,19193822-19194090 29 4.7
02_04_0307 - 21905897-21906490,21906581-21906722,21907116-219072... 29 4.7
01_05_0462 - 22451250-22451525,22451788-22451958,22452182-22452457 28 6.2
11_06_0666 + 26055471-26056290,26066462-26067192 28 8.2
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 8.2
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 124 bits (299), Expect = 7e-29
Identities = 58/104 (55%), Positives = 75/104 (72%)
Frame = +1
Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435
VL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+FCIGFT + ++TCY
Sbjct: 96 VLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCY 155
Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FPDSIAKDIEK 567
AQ +Q+R IR+KM EI+ ++ D + P+ I K+IEK
Sbjct: 156 AQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEK 199
Score = 123 bits (296), Expect = 2e-28
Identities = 60/84 (71%), Positives = 70/84 (83%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KKG KKK VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLAD
Sbjct: 13 KKGSKKKTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLAD 72
Query: 182 LQADTDAERSFRKFRLIAEYVQGR 253
LQ D D +++RK RL AE VQG+
Sbjct: 73 LQNDED--QAYRKIRLRAEDVQGK 94
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 123 bits (297), Expect = 1e-28
Identities = 61/84 (72%), Positives = 70/84 (83%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KKG KKK VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLAD
Sbjct: 13 KKGSKKKTVDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLAD 72
Query: 182 LQADTDAERSFRKFRLIAEYVQGR 253
LQ D D +++RK RL AE VQG+
Sbjct: 73 LQNDED--QAYRKIRLRAEDVQGK 94
Score = 122 bits (293), Expect = 4e-28
Identities = 57/104 (54%), Positives = 74/104 (71%)
Frame = +1
Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435
VL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCY
Sbjct: 96 VLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCY 155
Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FPDSIAKDIEK 567
AQ +Q+R IR+KM EI+ ++ D + P+ I K+IEK
Sbjct: 156 AQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEK 199
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 123 bits (296), Expect = 2e-28
Identities = 60/84 (71%), Positives = 71/84 (84%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
+KG KKK VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLAD
Sbjct: 13 RKGSKKKTVDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLAD 72
Query: 182 LQADTDAERSFRKFRLIAEYVQGR 253
LQ D D +++RK RL AE VQGR
Sbjct: 73 LQNDED--QAYRKVRLRAEDVQGR 94
Score = 122 bits (293), Expect = 4e-28
Identities = 63/122 (51%), Positives = 80/122 (65%)
Frame = +1
Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435
VL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCY
Sbjct: 96 VLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCY 155
Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FPDSIAKDIEKGLPWHLTLCAMFGIRK 615
AQ +Q+R IR+KM EI+ + D + P+ I K+IEK L +F IRK
Sbjct: 156 AQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVF-IRK 214
Query: 616 *K 621
K
Sbjct: 215 VK 216
>07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993
Length = 678
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 696 PCLHRLRR-ESSQSTSRSPKTGPSSTLSLSDAKHRAEGK 583
P LH S+ S+SRS + G S+ S+ D EGK
Sbjct: 140 PMLHTFHHLRSATSSSRSSQDGDSNDSSIEDGNENQEGK 178
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/76 (30%), Positives = 31/76 (40%)
Frame = +2
Query: 122 GTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRMCSATSTAWTSQPISS 301
GT AS GL G + + + SF R+ A G S A T P S
Sbjct: 30 GTPAASRGLPGWP---GFCGVGCGSSSSSSFAPPRMQARRAAG------SAARTRSPSQS 80
Query: 302 GGWLKNGRLSSKPTLM 349
GW+ G S+ P+L+
Sbjct: 81 NGWITGGSASAMPSLV 96
>02_04_0307 -
21905897-21906490,21906581-21906722,21907116-21907247,
21907303-21907433,21908028-21908185,21908299-21908396,
21908511-21908631,21908748-21908965,21909230-21909429
Length = 597
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 217 QIQINRRICARTYVLCNFHGMDLTTDKLRWMVKK 318
++ ++ R CA + L HG D+T+D + V++
Sbjct: 188 ELMLDMRTCAMAFRLLRMHGYDITSDGMAQFVEQ 221
>01_05_0462 - 22451250-22451525,22451788-22451958,22452182-22452457
Length = 240
Score = 28.3 bits (60), Expect = 6.2
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 16/101 (15%)
Frame = +2
Query: 443 TLRSEQSER-KCVKSLHATSLTLTQGGGEQVDFLTPLPRTSRRACHG------ILPSARC 601
TL +E +ER K ++S L + GE V ++ RT + CHG +LP
Sbjct: 121 TLTTEVAERLKAIRSTWREQL-IESANGETVQYV----RT--KICHGMICPLFVLPDGLS 173
Query: 602 LASESESVEEGPV---------FGDLEVDWELSRRRRWRQG 697
S E+ V F D E DW+ + R RWR G
Sbjct: 174 YFHHGRSSEKDIVGTSILEVDDFSDAEEDWKDAGRSRWRVG 214
>11_06_0666 + 26055471-26056290,26066462-26067192
Length = 516
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 558 HREGPAMASYPLRDVWHPKVKVL 626
H P+ +S PLR WH ++K L
Sbjct: 294 HLHDPSFSSSPLRASWHMRIKTL 316
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 169 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 77
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,425,581
Number of Sequences: 37544
Number of extensions: 452162
Number of successful extensions: 1406
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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