Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30014
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 134 1e-32
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 131 7e-32
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 110 2e-25
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 96 4e-21
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 82 7e-17
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 33 0.025
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 30 0.30
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 29 0.53
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 28 0.93
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 27 1.6
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 27 1.6
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 27 1.6
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 27 2.1
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 27 2.1
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 27 2.8
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 3.7
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 3.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 4.9
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 26 4.9
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 26 4.9
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 6.5
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 6.5
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 8.6
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 25 8.6
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 134 bits (323), Expect = 1e-32
Identities = 72/144 (50%), Positives = 92/144 (63%)
Frame = +2
Query: 47 YSDNQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSA 226
YSDNQPGVLIQVFEGERA TKD NLLGKFEL+GIPPAPRGVPQIEVTFD+DANGILNVSA
Sbjct: 429 YSDNQPGVLIQVFEGERARTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSA 488
Query: 227 IEKSTNKENRSPLPTTKVVSPRKRSSVWLMRQRSTETRMTRQKETIQGQECIGILLASA* 406
+EK T K + + K ++ + + + IQ + + S
Sbjct: 489 LEKGTGKTQKITITNDKGRLSKEEIDRMVAEAEKYKAEDEAESGRIQAKNHLESYAYSL- 547
Query: 407 SATMEDEKLKEKILLNSDKQTIPR 478
+++D LK+K+ SDK+T+ +
Sbjct: 548 RNSLDDPNLKDKVDA-SDKETVDK 570
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 131 bits (317), Expect = 7e-32
Identities = 71/144 (49%), Positives = 91/144 (63%)
Frame = +2
Query: 47 YSDNQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSA 226
Y+DNQPGVLIQVFEGERA TKD NLLGKFEL+GIPPAPRGVPQIEVTFD+DANGILNVSA
Sbjct: 429 YADNQPGVLIQVFEGERARTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSA 488
Query: 227 IEKSTNKENRSPLPTTKVVSPRKRSSVWLMRQRSTETRMTRQKETIQGQECIGILLASA* 406
+EK T K + + K ++ + + + IQ + + S
Sbjct: 489 LEKGTGKTQKITITNDKGRLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSL- 547
Query: 407 SATMEDEKLKEKILLNSDKQTIPR 478
+++D LK+K+ SDK+ I +
Sbjct: 548 RNSLDDPNLKDKVDA-SDKEAIDK 570
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 110 bits (264), Expect = 2e-25
Identities = 49/62 (79%), Positives = 57/62 (91%)
Frame = +2
Query: 53 DNQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIE 232
DNQ VLIQV+EGER +TKDNNLLGKF+L GIPPAPRGVPQIEVTF++DANG+L VSA++
Sbjct: 460 DNQNTVLIQVYEGERTLTKDNNLLGKFDLRGIPPAPRGVPQIEVTFEVDANGVLTVSAVD 519
Query: 233 KS 238
KS
Sbjct: 520 KS 521
Score = 46.8 bits (106), Expect = 2e-06
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +1
Query: 250 EQITITNDKGRLSKEEIERMVNEAEKYRNED 342
E++ I NDKGRLS+E+IERMV EAE++ ED
Sbjct: 527 EKLVIKNDKGRLSEEDIERMVKEAEEFAEED 557
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 95.9 bits (228), Expect = 4e-21
Identities = 41/68 (60%), Positives = 57/68 (83%)
Frame = +2
Query: 50 SDNQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAI 229
+D Q V I+VF+GER + +DN L+G F+LTGI PAP+G PQIEV+FD+DA+GI+NVSA
Sbjct: 473 ADGQTAVEIRVFQGERELVRDNKLIGNFQLTGIAPAPKGQPQIEVSFDVDADGIINVSAR 532
Query: 230 EKSTNKEN 253
+K+TNK++
Sbjct: 533 DKATNKDS 540
Score = 29.5 bits (63), Expect = 0.40
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 256 ITITNDKGRLSKEEIERMVNEAEKYRNED 342
IT+ G L+ EIE MV +AEKYR D
Sbjct: 542 ITVAGSSG-LTDSEIEAMVADAEKYRASD 569
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 81.8 bits (193), Expect = 7e-17
Identities = 35/66 (53%), Positives = 49/66 (74%)
Frame = +2
Query: 50 SDNQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAI 229
+DNQ V V++GER +N LG+F+LTGIPP PRG ++E TF++DANGIL V+A+
Sbjct: 435 ADNQTTVTFPVYQGERVNCAENEPLGEFQLTGIPPMPRGQAELEATFELDANGILKVTAV 494
Query: 230 EKSTNK 247
EK+T +
Sbjct: 495 EKTTGR 500
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 33.5 bits (73), Expect = 0.025
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = -3
Query: 309 HTLDLFLGET-TFVVGNGDLFSLLVDFSIAETLRIPLASMSKVTSI*GTPRGAGGIPVSS 133
H++ L ET T V GNG++ DFS+++ + + L + S S +P + +SS
Sbjct: 392 HSIFSALSETPTPVSGNGNVADAPPDFSLSQVMPLDLIAPSMQPSAVSSPMSESHVQISS 451
Query: 132 NLPSKLLSLVIARSPS 85
+P +S + R S
Sbjct: 452 EMPRTGMSALPMRPRS 467
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 29.9 bits (64), Expect = 0.30
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 181 GHLRHRCQRYPQRFRYREVHQQGEQITITNDKGRLSKEEIERM-VNEAEKYRN-EDDKAK 354
G + CQ+Y + YR+ +++ +++ ND ++ E+M + E RN DD +
Sbjct: 27 GDVCFECQKYNENCVYRQFYRKIKRLKYNNDNSKIDNFSNEQMNIPEFISVRNLNDDSSS 86
Query: 355 GDHPGP 372
+ GP
Sbjct: 87 IEFFGP 92
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 29.1 bits (62), Expect = 0.53
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 274 KGRLSKEEIERMVNEAEKYRNEDD 345
KG LSKEE+ER V +A K N D
Sbjct: 525 KGTLSKEELERRVYDAAKLANAYD 548
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 28.3 bits (60), Expect = 0.93
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 354 RRPSRAKNALESYWLQHEVLPWRMRSSR--KRFS*TLTSRPFLEQVQHPPIQVDGISS 521
R+ R+K A E+ +L+ V +R + R RF+ + R F + PPI + I++
Sbjct: 11 RKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAA 68
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 27.5 bits (58), Expect = 1.6
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +3
Query: 345 QGKRRPSRAKNALESYWLQHEVLPWRMRSSRKRFS*TLTSRPFLEQVQHPPIQVDG 512
Q R K L W HEVL WR+ S RF + E + H I DG
Sbjct: 339 QRPRMAVAPKARLFMLWNDHEVLLWRIGSPGYRFLLKIVLAD-EENISHAAISPDG 393
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +2
Query: 416 MEDEKLKEKILLNSDKQTIPRTSATSTHSSGWDFQSRLAEQGGV*AQGRKNWEGHLTIPI 595
+E K KEK + K ++ ++G SR + V G +W G + + +
Sbjct: 15 LETSKNKEKNIKGKKKNSLDPIEKNKQETAGLQTTSRPTAKQLV---GGSSWTGKIPVVL 71
Query: 596 INEDC 610
+NE C
Sbjct: 72 LNEHC 76
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 152 PAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENRSPLPTTK 277
PA + +P V D+ L S EK K+ +SPLP+ +
Sbjct: 461 PAVKSLPTESVGIDVVMEPKLQPSVKEKKPTKDLQSPLPSVE 502
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 222 ETLRIPLASMSKVTSI*GTPRGAGGIPVSSNLPSKLLSLVIARSPS 85
E L PLA MS TSI G G GG P + + + + +SPS
Sbjct: 76 EVLVDPLADMSAGTSIMGNNFGFGGFPRMNRRQRRRMG-IFDQSPS 120
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 354 RRPSRAKNALESYWLQHEVLPWRMRSSR--KRFS*TLTSRPFLEQVQHPPIQVDGISS 521
++ R+K A E+ +L+ V +R + R RF+ + R F + PPI + I++
Sbjct: 11 KKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAA 68
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 456 LTSRPFLEQVQHPPIQVDGISSPGWP-SKEEY 548
L P L+ + VDG+S PG P SKE Y
Sbjct: 464 LRLNPMLDGYSNSVAVVDGVSGPGEPGSKENY 495
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 461 KQTIPRTSATSTHSSGWDFQS 523
K+ + SAT HS GW+F++
Sbjct: 642 KKLVLEVSATKAHSLGWEFKA 662
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 6 TLPSPLNRLRHSPPTLITNPEYSSKYLR 89
T P RLRH+P I E KYLR
Sbjct: 43 TYGQPFKRLRHAPEKYIEFLELRLKYLR 70
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +1
Query: 241 QQGEQITITNDKGRLSKEEIERMVNEAEKYRNEDDKAKGDHPG 369
+ EQ N+ +SKE+ + + + ++ ED++ D G
Sbjct: 4018 KSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVG 4060
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 25.8 bits (54), Expect = 4.9
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = -2
Query: 226 SGNVEDTVGIDVEGDLNLRHATRRRWDPGQLEFTEQVVIFGH--STLTLKYLDEYSGLVI 53
+GN +D+ L+ RR+D G + F + + FG + T + Y+
Sbjct: 361 NGNQVKPTKLDLFSSGELKIFMNRRFDQGMVAFLDYLHQFGDFCAAKTPSAVLPYAIEND 420
Query: 52 RVGGECLSL-FSGDGSVT 2
R+GG+C+ L F+ D + T
Sbjct: 421 RIGGKCIRLAFNQDENWT 438
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -3
Query: 540 PCSASLDWKSHPLEWVD 490
P L WK HPL W D
Sbjct: 491 PILLRLKWKKHPLAWSD 507
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +2
Query: 194 IDANGILNVSAIEKSTNKENRSPLPTTKVVSPRKRSSVWLMRQRSTETRMTRQKETIQGQ 373
+D + ++ + E TNK + LP + PRK V L + +T R+ + + I Q
Sbjct: 850 VDISSLVGIDINEAVTNKYEANILPYIAGLGPRKADYV-LKKIAATGGRIDNRSDLISKQ 908
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 25.4 bits (53), Expect = 6.5
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = -3
Query: 237 DFSIAETLRIPLASMSKVTSI*GTPRGAGGIPVSSNLPSKLLSLVIARSPSNTWMSTPGW 58
+ S L IP+AS K S T G G S + P L++ + R+ S +
Sbjct: 479 NLSRRNNLAIPIASRRKSVSAVNTLYGVGSSYTSESFPFSKLTVPVERNSFRETESPKPF 538
Query: 57 LS 52
LS
Sbjct: 539 LS 540
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 134 ELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENRSPLPT 271
E+ PP PR VP + + + +++ K +++ R LPT
Sbjct: 75 EIPSDPPLPRAVPTVRLGRSTSSRSRNSLNLDMKDPSEKPRRSLPT 120
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -2
Query: 151 WDPGQLEFTEQVVIFGHSTLTLKYLDEYSGLVIRVGGECLS 29
WD G+ ++ I GHS +L L+ S L +S
Sbjct: 61 WDNGKFSLVDRFTIDGHSPTSLCVLENGSVLTANYNSASIS 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,337
Number of Sequences: 5004
Number of extensions: 55545
Number of successful extensions: 209
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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