Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30011
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 75 1e-14
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 43 6e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 42 7e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 42 1e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 42 1e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 41 2e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 41 2e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 40 4e-04
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 40 5e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 39 7e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 38 0.001
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 37 0.004
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 36 0.005
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.005
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.006
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 35 0.011
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 35 0.015
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 34 0.026
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 32 0.078
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.14
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.14
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 31 0.18
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.31
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 29 0.55
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 29 0.96
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 2.2
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.9
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 2.9
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 27 2.9
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 27 3.9
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 26 5.1
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 26 6.8
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 6.8
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 6.8
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 26 6.8
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 9.0
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 9.0
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 74.9 bits (176), Expect = 1e-14
Identities = 35/87 (40%), Positives = 56/87 (64%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIK 434
+GE++D VM+D T RS+GFGF+T+ V+E ++ H +DG+I++PKRA+PREE +
Sbjct: 186 FGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKIIDPKRAIPREEQE 244
Query: 435 RPEASATVKKLFVAGLKQDIEEEDLES 515
+ K+FV G+ D EE+ +
Sbjct: 245 K------TAKMFVGGVPGDCTEEEFRN 265
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIVEPKRAVPREEI 431
+G ++D +M D T R +GFGF+TY V EA ++P+ I G+ VE KRA P+ +
Sbjct: 270 FGRVLDATLMMDKDTGRPRGFGFVTYENESAV-EATMSQPYITIHGKPVEVKRATPKASL 328
Query: 432 K 434
+
Sbjct: 329 R 329
Score = 47.2 bits (107), Expect = 3e-06
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH 649
LR+YF FG ++ +V+ D TG+ RGFGF+ F + V+ V +++H
Sbjct: 179 LRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHH 226
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/44 (36%), Positives = 29/44 (65%)
Frame = +2
Query: 509 REYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 640
R +F+ FG ++ +++ DK+TG+ RGFGFV +++ V+ Q
Sbjct: 264 RNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Score = 35.1 bits (77), Expect = 0.011
Identities = 15/27 (55%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Frame = +1
Query: 190 KLFIGGLDYRTTDSSLKEFYEH-GEKL 267
K+FIGGL++ TTD SL++++E GE L
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVL 190
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 169 EEPEHTRKLFIGGLDYRTTDSSLKEFY 249
EE E T K+F+GG+ T+ + F+
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFF 267
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 42.7 bits (96), Expect = 6e-05
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 628
FS FG I+S V+ DKETG + F+EFD+ + V++
Sbjct: 264 FSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 42.3 bits (95), Expect = 7e-05
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
FS FG V +++V DKETGK +GF F++++D
Sbjct: 51 FSEFGEPVDINLVRDKETGKSKGFAFLKYED 81
Score = 32.7 bits (71), Expect = 0.059
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIV 398
+GE VD+ +++D +T +SKGF F+ Y A +N + K+ R+V
Sbjct: 54 FGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLV 102
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 616
L+E+F G I V ++T ++TGK +GFGFV+F D D
Sbjct: 244 LKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDID 280
Score = 30.3 bits (65), Expect = 0.31
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 193 LFIGGLDYRTTDSSLKEFY 249
LF+G LD+ TTD+ LKE +
Sbjct: 230 LFVGNLDFETTDADLKEHF 248
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
RL+ FS FG I S ++TD E GK +GFGFV + + ++ + N ++
Sbjct: 379 RLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRM 428
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 616
+ L + FS FG I+S V D E G +G+GFV FD +
Sbjct: 182 KALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVE 219
Score = 33.9 bits (74), Expect = 0.026
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 512 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 616
+ F FG I S+S+V D + K RGFGFV + +++
Sbjct: 279 DLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHE 312
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 252 AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAVPREE 428
A+G I +M D + K SKGFGF+ Y+ ++A + + G+ + A R+E
Sbjct: 386 AFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA-QRKE 443
Query: 429 IKRPEASATVKKLFVAGLKQDI 494
++R + A ++ L+Q +
Sbjct: 444 VRRSQLEAQIQARNQFRLQQQV 465
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 41.1 bits (92), Expect = 2e-04
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVPREEIK 434
G I VV+ +P+T ++G+GF+T+S A + K+ GRI+ A PR K
Sbjct: 29 GPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPR---K 85
Query: 435 RPEASATVKKLFVAGLKQD 491
R E K ++QD
Sbjct: 86 RSEVDTDQNKAVKKTIRQD 104
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 628
L +FS G I VVT+ ETG+ RG+GFV F + R
Sbjct: 21 LTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITY 332
+G + ++KDP T RS G GFI +
Sbjct: 300 FGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 616
LR+ F FG I V + DKETG+ +GF FV + D D
Sbjct: 218 LRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRD 254
Score = 29.1 bits (62), Expect = 0.73
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITY 332
+G I V + KD +T R+KGF F++Y
Sbjct: 225 FGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 652
R L + FS G +V V E G+ +G+GFV +D ++ D N+Q
Sbjct: 113 RVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQ 163
Score = 29.5 bits (63), Expect = 0.55
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +3
Query: 252 AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD---EAQNNR 371
A G++V + + RSKG+GF++Y D EA NN+
Sbjct: 121 ALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQ 163
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 410
+++I +G + V +M++P TK S+GFGF+++S A +N + GR++ ++
Sbjct: 117 LQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQK 176
Query: 411 A 413
A
Sbjct: 177 A 177
Score = 33.1 bits (72), Expect = 0.045
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
L++ FS FG + V ++ + T RGFGF+ F
Sbjct: 117 LQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.1 bits (87), Expect = 7e-04
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
L + FS + ++V VV D+E GK RGFGFV F D D + ++N
Sbjct: 46 LYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWREKN 91
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
F G+I S+ + TD ++G+ +GFG+V F D D + C++ N
Sbjct: 386 FGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK-CVEMN 427
Score = 35.5 bits (78), Expect = 0.008
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 607
L + F +G IV V+ D ++G+ +G+G+V+F+
Sbjct: 279 LGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFE 312
Score = 35.5 bits (78), Expect = 0.008
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPREEI 431
+G IV V+ D ++ RSKG+G++ + A N +IDGR+V + PR
Sbjct: 286 YGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPAN 345
Query: 432 KRPEA 446
+P A
Sbjct: 346 PQPYA 350
Score = 34.7 bits (76), Expect = 0.015
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 422
G+I + + DP++ R KGFG++T+S + H I GR + PR
Sbjct: 390 GDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 640
L+ F FG + V + DK+T +GF +++F D D R L+
Sbjct: 339 LKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 36.3 bits (80), Expect = 0.005
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 616
+++R YFS FG ++ + + +++TG + + F+EF+ D
Sbjct: 119 KQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLD 157
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 36.3 bits (80), Expect = 0.005
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 255 WGE-IVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEI 431
+GE + + ++ DP T+RS+GFG++ + A + A + GR V A PR
Sbjct: 114 FGEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPRRSF 173
Query: 432 KRPEAS 449
R E S
Sbjct: 174 AREERS 179
Score = 31.1 bits (67), Expect = 0.18
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 527 FGN-IVSVSVVTDKETGKKRGFGFVEFDDYD 616
FG + S+ +V D T + RGFG+VEF+ D
Sbjct: 114 FGEGVTSIRLVIDPLTERSRGFGYVEFETAD 144
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 35.9 bits (79), Expect = 0.006
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
L+ +F G + SV + TDK +G+++G+ FVEF
Sbjct: 108 LQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 35.1 bits (77), Expect = 0.011
Identities = 12/35 (34%), Positives = 25/35 (71%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
L+ +F++ G++ V+++ DK TG +GF ++EF +
Sbjct: 71 LQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSE 105
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 34.7 bits (76), Expect = 0.015
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
+++ E F+ G + + +V D ETG +G+GF EF D
Sbjct: 21 QQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 33.9 bits (74), Expect = 0.026
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 637
L YF G+I V +V D +T +GF +++F D VD+ L
Sbjct: 286 LWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Score = 32.7 bits (71), Expect = 0.059
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKRA 413
G I V +++DPKT KGF +I + VD+A K+ +GR + RA
Sbjct: 294 GSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRA 346
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 32.3 bits (70), Expect = 0.078
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 515 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
+ S + + S ++TD +T RG+GFV F D + + QI
Sbjct: 206 FASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQI 252
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +3
Query: 279 VMKDPKTKRSKGFGFITYS 335
+M DP+T S+G+GF+ ++
Sbjct: 218 IMTDPQTNVSRGYGFVRFT 236
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
++L E FS FG I S ++ + T +G+GFV F
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSF 469
Score = 28.7 bits (61), Expect = 0.96
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIK 434
+G I + P T+ SKG+GF+++S +A N ++G + KR K
Sbjct: 444 FGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINT----LNGVLFGKKRLFVNYAEK 499
Query: 435 RPEASATVKKLF 470
R + + +F
Sbjct: 500 REDRKKRLSAIF 511
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 31.5 bits (68), Expect = 0.14
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 512 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
+ F G + S +V D E+G+ +G+GF E+ D
Sbjct: 23 DIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHD 55
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 31.1 bits (67), Expect = 0.18
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 497 RRRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
+ +L + FS FG+I+S + +G +G+GFV F
Sbjct: 397 KSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 30.3 bits (65), Expect = 0.31
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
F FG I+SV++ KE R + FVEFD+ + N+ I
Sbjct: 26 FIPFGEIISVALHR-KEKAVDRSYAFVEFDEPEDAKEAMENMNYSI 70
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.5 bits (63), Expect = 0.55
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
R L + F+ G+++ + + TG+ +GFG V+F++
Sbjct: 294 RNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFEN 329
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 28.7 bits (61), Expect = 0.96
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 515 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
Y + FG + S + D ET +G+GF F++
Sbjct: 315 YTNRFGKVSSSKAIIDMETNLCKGYGFACFEE 346
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITY 332
+K I +G+I V + +D + RSKGFG+I Y
Sbjct: 356 VKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQY 387
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
++T + +V+++ +KET K R F F +F
Sbjct: 92 YATGAKVSTVTLIREKETQKSRCFAFAKF 120
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/66 (19%), Positives = 33/66 (50%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIK 434
+G++ V + K + + KGFG++ + + A + ++ R++ + PRE ++
Sbjct: 780 YGQVESVRIPK--RFNQHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNVVLSKPRESLE 837
Query: 435 RPEASA 452
+ S+
Sbjct: 838 KTRVSS 843
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 187 VCVQVLHSHRRFPKASYLIFTRLKS*DVNNQLRIGFQFNLLSLCFCSIKYSVSFLSL 17
V +VL SH S + + LKS + NN + GF S+ + ++V F S+
Sbjct: 736 VLARVLVSHEVSRLTSEALLSELKSRNGNNSVEEGFSEEERSILLKLLSWNVKFCSI 792
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 497 RRRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 628
+R L F ++G ++ V ++T + RG FV FD+ + R
Sbjct: 43 KRILEHLFGSYGKVIDVQA---RKTLRMRGQAFVVFDNLENASR 83
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/67 (28%), Positives = 27/67 (40%)
Frame = +2
Query: 467 VCSWTEARH*RRRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
V S+T+ R L E + + S +T K FG+ EF+ D D +
Sbjct: 570 VSSFTDVNFWRSPLLELSDEEEDDTNKSTSKSPKTPKNTKFGYQEFEGIDEEDAQDYSPS 629
Query: 647 HQIKRFN 667
IK FN
Sbjct: 630 PLIKSFN 636
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 6.8
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 333 SQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLK 485
S H+V A NRP +D ++ P R + I RP+ +++F LK
Sbjct: 432 SSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGR-EQIFKVHLK 481
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 512 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
E FG+++S ++ + G +GF F EF
Sbjct: 328 ELLKPFGDLLSFQLIKNIADGSSKGFCFCEF 358
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 145 PSESGDDYEEPEHTRKLFI 201
PS G YEEPEHTR +I
Sbjct: 76 PSADGG-YEEPEHTRLSYI 93
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.8 bits (54), Expect = 6.8
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 291 PKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE-IKRPEASATVKK 464
P+T+ S+ F F+ Y + ++A +++ GR +E V R E K+P S K
Sbjct: 41 PRTRTSRPFAFVEYEDSRDAEDAY----YEVHGRRLERGGGVLRVEWAKQPPPSGPGSK 95
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 467 QLFNGGTSFWSFNLFPWNCSFWLDNSSVNFVRPIILSFINHMGLRICNK 321
QL SF +F +F + L S N++ + +FI+H+ R+ N+
Sbjct: 1246 QLTPTSKSFQNFLIFAGVIYYLLAASGQNYIFISMTNFISHLNNRLLNR 1294
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 609 IMIQLTEYACNKITKLKDST 668
I + L+EY CN +TK D T
Sbjct: 255 IPLFLSEYGCNDVTKESDGT 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,092
Number of Sequences: 5004
Number of extensions: 57188
Number of successful extensions: 216
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -