Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30005
         (981 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     25   0.90 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   8.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   8.4  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 600 RNLSFKVMFSGN 635
           RNLS+KVM++GN
Sbjct: 15  RNLSYKVMYNGN 26


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +2

Query: 446 GKWNWAQIHNFERFP 490
           G+WN++  ++FE++P
Sbjct: 74  GQWNYSPDNHFEQYP 88


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 592 FLEGTFHSKLCFL 630
           F E T HSKLC L
Sbjct: 426 FNENTIHSKLCKL 438


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 236 FPGYGPRNFTNGSSL 192
           FPG+GP     GSS+
Sbjct: 750 FPGHGPTTAPMGSSI 764


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,886
Number of Sequences: 336
Number of extensions: 4592
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27823477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)