Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0004
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in ge...    27   7.7  
U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in ge...    27   7.7  
AF077531-6|AAC64616.2|  408|Caenorhabditis elegans Gex interacti...    27   7.7  

>U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform b protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 217 WHKTRNSF*SIGTRSPXRGELYNGYXGREHRTS 315
           WH +  +        P RGEL +G  GR HR+S
Sbjct: 439 WHHSLPANFLKNFNMPCRGELSDGSNGRRHRSS 471


>U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform a protein.
          Length = 977

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 217 WHKTRNSF*SIGTRSPXRGELYNGYXGREHRTS 315
           WH +  +        P RGEL +G  GR HR+S
Sbjct: 439 WHHSLPANFLKNFNMPCRGELSDGSNGRRHRSS 471


>AF077531-6|AAC64616.2|  408|Caenorhabditis elegans Gex interacting
           protein protein10, isoform a protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +1

Query: 202 RSEEDWHKTRNSF*SIGTRSPXRGELYNGYXGREHRTSHPLEXAADRRNPQV 357
           R + DW     S+ S   R+P   E      G+  R S+P+   +  RN  V
Sbjct: 336 RPDTDWRNNNTSYLSAALRTPKFWEQRFENIGKHVRDSNPISLESINRNRPV 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,883,263
Number of Sequences: 27780
Number of extensions: 128327
Number of successful extensions: 444
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)